Rmu_sc0001436.1_g000019

Belongs to the RNase T2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001436.1
OG0000633
Physical Location & Seq
Reverse (-)
81775 .. 82940
1166 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001436.1_g000019.1.cds

Sequence Viewer

Length: 816 bp
atgaccgagcaggaagaaaaggcaggggagggtagaagtgacgcccgggcactgatattctctccggcagagatcgcaaccttccgggaacaagtcaggatcgatcgggaacaacaaagaatcgatagggaaacaaaactcctttcgcaacagagactgcaggagctggaagatgaaaacactgcgctggcccgagcactggacataaggtaccagcttaatgaggcactcacccaagccctagctagaacatcccaggtagcaacatatataaatgctgccccggtaacgggaggcaccagcctggctccaaccccttctatggaaagcggtcactggatgatccaagtactagtaaacttgttttcggaaaacctgaggcatttgccaccaccaccattaccacagccagctcaaagtgacccacctgtaacttatctaaacacgacgttactcttgcaaatgagcaactccttgcatgccctgcaggcaagggttgaggcggcagagaatagggatacctggcgacccttgactacttacgaggaccgttcgggtccttttacccaacaggttagaggagccattcgaacaaacatatcaaagccactgaagattgactatacgggagttggggacccgtaccagcacctacaggctttccgctcacaaactagcgccaaagggtacacggatgaggcgactaccgctaagtgtcgggaccttaacaaggaactggctgagctggatttcaggaggggcctaaggagcggagagtttctctacaggattaaccatcaccaccaccccggctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribonuclease_T2

Protein Analysis

271

Amino Acids

30.61

Weight (kDa)

6.26

Isoelectric Point (pI)

47.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 210
AccB1I GGYRCC 2 cut(s) 210, 296
AccBSI CCGCTC 2 cut(s) 666, 771
AciI CCGC 5 cut(s) 330, 503, 664, 708, 771
AclWI GGATC 2 cut(s) 107, 337
AcuI CTGAAG 1 cut(s) 632
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 4 cut(s) 212, 351, 644, 689
AfiI CCNNNNNNNGG 5 cut(s) 199, 289, 290, 322, 730
AhlI ACTAGT 1 cut(s) 352
AjnI CCWGG 3 cut(s) 255, 303, 521
AluBI AGCT 5 cut(s) 166, 217, 245, 413, 745
AluI AGCT 5 cut(s) 166, 217, 245, 413, 745
Alw21I GWGCWC 1 cut(s) 199
Alw26I GTCTC 1 cut(s) 148
AlwI GGATC 2 cut(s) 107, 337
AlwNI CAGNNNCTG 2 cut(s) 157, 166
Ama87I CYCGRG 2 cut(s) 45, 192
AoxI GGCC 2 cut(s) 189, 760
ApeKI GCWGC 1 cut(s) 278
Asp718I GGTACC 1 cut(s) 210
AspLEI GCGC 2 cut(s) 187, 680
AspS9I GGNCC 6 cut(s) 190, 547, 557, 637, 721, 760
AsuC2I CCSGG 5 cut(s) 46, 47, 86, 284, 810
AsuHPI GGTGA 2 cut(s) 223, 791
AsuII TTCGAA 1 cut(s) 589
AvaI CYCGRG 2 cut(s) 45, 192
AvaII GGWCC 4 cut(s) 547, 557, 637, 721
AxyI CCTNAGG 2 cut(s) 377, 764
BaeGI GKGCMC 1 cut(s) 52
BanI GGYRCC 2 cut(s) 210, 296
Bbv12I GWGCWC 1 cut(s) 199
BbvI GCAGC 1 cut(s) 265
BccI CCATC 1 cut(s) 804
BciT130I CCWGG 3 cut(s) 257, 305, 523
BciVI GTATCC 1 cut(s) 511
BcnI CCSGG 5 cut(s) 46, 47, 86, 284, 810
BcoDI GTCTC 1 cut(s) 148
BcuI ACTAGT 1 cut(s) 352
BfaI CTAG 5 cut(s) 242, 246, 353, 675, 814
BfmI CTRYAG 4 cut(s) 158, 485, 653, 784
BfoI RGCGCY 1 cut(s) 681
BfuI GTATCC 1 cut(s) 511
BglI GCCNNNNNGGC 1 cut(s) 488
BisI GCNGC 2 cut(s) 279, 504
BlpI GCTNAGC 1 cut(s) 741
BlsI GCNGC 2 cut(s) 280, 505
BmcAI AGTACT 1 cut(s) 351
Bme1390I CCNGG 8 cut(s) 46, 47, 86, 257, 284, 305, 523, 810
Bme18I GGWCC 4 cut(s) 547, 557, 637, 721
BmeT110I CYCGRG 2 cut(s) 45, 192
BmgT120I GGNCC 6 cut(s) 190, 547, 557, 637, 721, 760
BmiI GGNNCC 9 cut(s) 212, 298, 309, 558, 583, 638, 639, 722, 761
BmrFI CCNGG 8 cut(s) 46, 47, 86, 257, 284, 305, 523, 810
BplI GAGNNNNNCTC 2 cut(s) 765, 797
Bpu1102I GCTNAGC 1 cut(s) 741
Bpu14I TTCGAA 1 cut(s) 589
BpuMI CCSGG 5 cut(s) 46, 47, 86, 284, 810
Bsa29I ATCGAT 2 cut(s) 102, 123
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 4 cut(s) 45, 255, 282, 808
Bsc4I CCNNNNNNNGG 5 cut(s) 199, 289, 290, 322, 730
Bse1I ACTGG 3 cut(s) 204, 341, 741
Bse21I CCTNAGG 2 cut(s) 377, 764
BseBI CCWGG 3 cut(s) 257, 305, 523
BseCI ATCGAT 2 cut(s) 102, 123
BseDI CCNNGG 4 cut(s) 45, 255, 282, 808
BseGI GGATG 3 cut(s) 251, 345, 700
BseLI CCNNNNNNNGG 5 cut(s) 199, 289, 290, 322, 730
BseMII CTCAG 2 cut(s) 368, 732
BseNI ACTGG 3 cut(s) 204, 341, 741
BseRI GAGGAG 1 cut(s) 594
BseSI GKGCMC 1 cut(s) 52
BseXI GCAGC 1 cut(s) 265
Bsh1285I CGRYCG 1 cut(s) 106
BshFI GGCC 2 cut(s) 191, 762
BshNI GGYRCC 2 cut(s) 210, 296
BshVI ATCGAT 2 cut(s) 102, 123
BsiEI CGRYCG 1 cut(s) 106
BsiHKAI GWGCWC 1 cut(s) 199
BsiHKCI CYCGRG 2 cut(s) 45, 192
BsiSI CCGG 5 cut(s) 46, 65, 85, 284, 810
BslFI GGGAC 2 cut(s) 650, 734
BslI CCNNNNNNNGG 5 cut(s) 199, 289, 290, 322, 730
BsmAI GTCTC 1 cut(s) 148
BsmFI GGGAC 2 cut(s) 650, 734
BsnI GGCC 2 cut(s) 191, 762
BsoBI CYCGRG 2 cut(s) 45, 192
Bsp119I TTCGAA 1 cut(s) 589
Bsp1286I GDGCHC 2 cut(s) 52, 199
Bsp143I GATC 4 cut(s) 72, 99, 103, 342
Bsp1720I GCTNAGC 1 cut(s) 741
BspACI CCGC 5 cut(s) 330, 503, 664, 708, 771
BspANI GGCC 2 cut(s) 191, 762
BspCNI CTCAG 2 cut(s) 369, 733
BspDI ATCGAT 2 cut(s) 102, 123
BspLI GGNNCC 9 cut(s) 212, 298, 309, 558, 583, 638, 639, 722, 761
BspMAI CTGCAG 2 cut(s) 162, 489
BspPI GGATC 2 cut(s) 107, 337
BspT104I TTCGAA 1 cut(s) 589
BspT107I GGYRCC 2 cut(s) 210, 296
BsrBI CCGCTC 2 cut(s) 666, 771
BsrI ACTGG 3 cut(s) 204, 341, 741
BssECI CCNNGG 4 cut(s) 45, 255, 282, 808
BssMI GATC 4 cut(s) 72, 99, 103, 342
BssNI GRCGYC 1 cut(s) 42
Bst2UI CCWGG 3 cut(s) 257, 305, 523
Bst4CI ACNGT 1 cut(s) 551
BstACI GRCGYC 1 cut(s) 42
BstAPI GCANNNNNTGC 1 cut(s) 484
BstBI TTCGAA 1 cut(s) 589
BstC8I GCNNGC 4 cut(s) 189, 411, 480, 489
BstDEI CTNAG 4 cut(s) 377, 711, 741, 764
BstENI CCTNNNNNAGG 1 cut(s) 728
BstF5I GGATG 3 cut(s) 251, 345, 700
BstH2I RGCGCY 1 cut(s) 681
BstHHI GCGC 2 cut(s) 187, 680
BstKTI GATC 4 cut(s) 75, 102, 106, 345
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 4 cut(s) 72, 99, 103, 342
BstMCI CGRYCG 1 cut(s) 106
BstMWI GCNNNNNNNGC 5 cut(s) 74, 484, 488, 707, 768
BstNI CCWGG 3 cut(s) 257, 305, 523
BstNSI RCATGY 1 cut(s) 482
BstSCI CCNGG 8 cut(s) 44, 45, 84, 255, 282, 303, 521, 808
BstSFI CTRYAG 4 cut(s) 158, 485, 653, 784
BstSLI GKGCMC 1 cut(s) 52
BstV1I GCAGC 1 cut(s) 265
Bsu15I ATCGAT 2 cut(s) 102, 123
Bsu36I CCTNAGG 2 cut(s) 377, 764
BsuI GTATCC 1 cut(s) 511
BsuRI GGCC 2 cut(s) 191, 762
BsuTUI ATCGAT 2 cut(s) 102, 123
BtsCI GGATG 3 cut(s) 251, 345, 700
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 5 cut(s) 50, 180, 197, 334, 608
Cac8I GCNNGC 4 cut(s) 189, 411, 480, 489
CaiI CAGNNNCTG 2 cut(s) 157, 166
CfoI GCGC 2 cut(s) 187, 680
Cfr13I GGNCC 6 cut(s) 190, 547, 557, 637, 721, 760
Cfr9I CCCGGG 1 cut(s) 45
ClaI ATCGAT 2 cut(s) 102, 123
CseI GACGC 1 cut(s) 50
Csp6I GTAC 4 cut(s) 211, 350, 643, 688
CviAII CATG 1 cut(s) 479
CviQI GTAC 4 cut(s) 211, 350, 643, 688
DdeI CTNAG 4 cut(s) 377, 711, 741, 764
DpnI GATC 4 cut(s) 74, 101, 105, 344
DpnII GATC 4 cut(s) 72, 99, 103, 342
Eco47I GGWCC 4 cut(s) 547, 557, 637, 721
Eco57I CTGAAG 1 cut(s) 632
Eco81I CCTNAGG 2 cut(s) 377, 764
Eco88I CYCGRG 2 cut(s) 45, 192
EcoNI CCTNNNNNAGG 1 cut(s) 728
EcoO109I RGGNCCY 4 cut(s) 557, 637, 721, 760
EcoRII CCWGG 3 cut(s) 255, 303, 521
FaeI CATG 1 cut(s) 482
FaiI YATR 8 cut(s) 206, 268, 270, 272, 323, 480, 599, 624
FaqI GGGAC 2 cut(s) 650, 734
FatI CATG 1 cut(s) 478
Fnu4HI GCNGC 2 cut(s) 279, 504
FokI GGATG 3 cut(s) 238, 352, 707
Fsp4HI GCNGC 2 cut(s) 279, 504
FspBI CTAG 5 cut(s) 242, 246, 353, 675, 814
GlaI GCGC 2 cut(s) 186, 679
GluI GCNGC 2 cut(s) 279, 504
HaeII RGCGCY 1 cut(s) 681
HaeIII GGCC 2 cut(s) 191, 762
HapII CCGG 5 cut(s) 46, 65, 85, 284, 810
HgaI GACGC 1 cut(s) 50
HhaI GCGC 2 cut(s) 187, 680
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 1 cut(s) 482
Hin6I GCGC 2 cut(s) 185, 678
HinP1I GCGC 2 cut(s) 185, 678
HinfI GANTC 1 cut(s) 120
HpaII CCGG 5 cut(s) 46, 65, 85, 284, 810
HphI GGTGA 2 cut(s) 223, 791
Hpy166II GTNNAC 2 cut(s) 358, 690
Hpy188I TCNGA 1 cut(s) 370
Hpy188III TCNNGA 4 cut(s) 97, 107, 719, 754
Hpy8I GTNNAC 2 cut(s) 358, 690
Hpy99I CGWCG 1 cut(s) 451
HpyAV CCTTC 2 cut(s) 91, 327
HpyCH4III ACNGT 1 cut(s) 551
HpyCH4IV ACGT 1 cut(s) 449
HpyCH4V TGCA 4 cut(s) 160, 460, 478, 487
HpyF10VI GCNNNNNNNGC 5 cut(s) 74, 484, 488, 707, 768
HpyF3I CTNAG 4 cut(s) 377, 711, 741, 764
HpySE526I ACGT 1 cut(s) 449
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 1 cut(s) 482
HspAI GCGC 2 cut(s) 185, 678
KflI GGGWCCC 1 cut(s) 637
KpnI GGTACC 1 cut(s) 214
Kzo9I GATC 4 cut(s) 72, 99, 103, 342
LmnI GCTCC 4 cut(s) 163, 313, 581, 768
Lsp1109I GCAGC 1 cut(s) 265
MaeI CTAG 5 cut(s) 242, 246, 353, 675, 814
MaeII ACGT 1 cut(s) 449
MaeIII GTNAC 6 cut(s) 38, 286, 332, 419, 430, 450
MalI GATC 4 cut(s) 74, 101, 105, 344
MbiI CCGCTC 2 cut(s) 666, 771
MboI GATC 4 cut(s) 72, 99, 103, 342
MboII GAAGA 3 cut(s) 26, 182, 625
MhlI GDGCHC 2 cut(s) 52, 199
MmeI TCCRAC 1 cut(s) 335
MnlI CCTC 9 cut(s) 22, 217, 287, 372, 493, 538, 572, 691, 750
MseI TTAA 3 cut(s) 219, 726, 792
MspI CCGG 5 cut(s) 46, 65, 85, 284, 810
MspR9I CCNGG 8 cut(s) 46, 47, 86, 257, 284, 305, 523, 810
MvaI CCWGG 3 cut(s) 257, 305, 523
MwoI GCNNNNNNNGC 5 cut(s) 74, 484, 488, 707, 768
NciI CCSGG 5 cut(s) 46, 47, 86, 284, 810
NdeII GATC 4 cut(s) 72, 99, 103, 342
NlaIII CATG 1 cut(s) 482
NlaIV GGNNCC 9 cut(s) 212, 298, 309, 558, 583, 638, 639, 722, 761
NmuCI GTSAC 3 cut(s) 38, 332, 419
NspI RCATGY 1 cut(s) 482
NspV TTCGAA 1 cut(s) 589
PaeI GCATGC 1 cut(s) 482
PcsI WCGNNNNNNNCGW 1 cut(s) 698
PfeI GAWTC 1 cut(s) 120
PfoI TCCNGGA 1 cut(s) 84
PkrI GCNGC 2 cut(s) 280, 505
Ple19I CGATCG 1 cut(s) 106
PpuMI RGGWCCY 3 cut(s) 557, 637, 721
Psp5II RGGWCCY 3 cut(s) 557, 637, 721
Psp6I CCWGG 3 cut(s) 255, 303, 521
PspGI CCWGG 3 cut(s) 255, 303, 521
PspN4I GGNNCC 9 cut(s) 212, 298, 309, 558, 583, 638, 639, 722, 761
PspPI GGNCC 6 cut(s) 190, 547, 557, 637, 721, 760
PspPPI RGGWCCY 3 cut(s) 557, 637, 721
PstI CTGCAG 2 cut(s) 162, 489
PstNI CAGNNNCTG 2 cut(s) 157, 166
PvuI CGATCG 1 cut(s) 106
RsaI GTAC 4 cut(s) 212, 351, 644, 689
RsaNI GTAC 4 cut(s) 211, 350, 643, 688
SaqAI TTAA 3 cut(s) 219, 726, 792
SatI GCNGC 2 cut(s) 279, 504
Sau3AI GATC 4 cut(s) 72, 99, 103, 342
Sau96I GGNCC 6 cut(s) 190, 547, 557, 637, 721, 760
SbfI CCTGCAGG 1 cut(s) 489
ScaI AGTACT 1 cut(s) 351
ScrFI CCNGG 8 cut(s) 46, 47, 86, 257, 284, 305, 523, 810
SdaI CCTGCAGG 1 cut(s) 489
SduI GDGCHC 2 cut(s) 52, 199
SfcI CTRYAG 4 cut(s) 158, 485, 653, 784
SfuI TTCGAA 1 cut(s) 589
SinI GGWCC 4 cut(s) 547, 557, 637, 721
SmaI CCCGGG 1 cut(s) 47
SpeI ACTAGT 1 cut(s) 352
SphI GCATGC 1 cut(s) 482
SrfI GCCCGGGC 1 cut(s) 47
Sse8387I CCTGCAGG 1 cut(s) 489
SsiI CCGC 5 cut(s) 330, 503, 664, 708, 771
SspMI CTAG 5 cut(s) 242, 246, 353, 675, 814
StyD4I CCNGG 8 cut(s) 44, 45, 84, 255, 282, 303, 521, 808
TaaI ACNGT 1 cut(s) 551
TaiI ACGT 1 cut(s) 452
TaqI TCGA 3 cut(s) 102, 123, 589
TaqII GACCGA 1 cut(s) 20
TatI WGTACW 1 cut(s) 349
TauI GCSGC 1 cut(s) 506
TfiI GAWTC 1 cut(s) 120
Tru1I TTAA 3 cut(s) 219, 726, 792
Tru9I TTAA 3 cut(s) 219, 726, 792
TscAI CASTG 5 cut(s) 57, 187, 204, 341, 615
TseFI GTSAC 3 cut(s) 38, 332, 419
TseI GCWGC 1 cut(s) 278
Tsp45I GTSAC 3 cut(s) 38, 332, 419
TspDTI ATGAA 1 cut(s) 189
TspGWI ACGGA 1 cut(s) 707
TspMI CCCGGG 1 cut(s) 45
TspRI CASTG 5 cut(s) 57, 187, 204, 341, 615
VpaK11BI GGWCC 4 cut(s) 547, 557, 637, 721
XagI CCTNNNNNAGG 1 cut(s) 728
XceI RCATGY 1 cut(s) 482
XmaI CCCGGG 1 cut(s) 45
XspI CTAG 5 cut(s) 242, 246, 353, 675, 814
ZrmI AGTACT 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.