Rroxscaffold_6G00389000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000633
Physical Location & Seq
Forward (+)
2393816 .. 2394491
676 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00389000.1

Sequence Viewer

Length: 465 bp
ATGGGCCGGGTTCACAACCCACCATGGCAGGACTCGTATGGGATGTCACCCCGCCACCCAAGGCCCGGGCAAGGCTGGCATAGCCCATCTAATCACACAAACAAGAGAGCTGATATGGCATCGGAAGAACAACCTATGTCCCACATCGAAGATATGGGAGACTCCTTCCCATGCTTGAGTATAATGGCATTAGCACAACTACCTTTGACGGCCATCATGACCGAGCCGAAAGAAACGGCGGGAGAGGGTAGAAGTGTCGCCGGCACCGATATTCTCTCCGGGTACTTCATCGCCAGAAACGCCAAGTGTCAAAAGAGAACGCATGGTCTCGGGTTATTGGACCCACACGGCACGGGCAATCCACCAATCACCCGGCACCCGCAAGCCGGATCGGGTAGCTCCGTATCGGAGTTGGAGTCTATGCGAGCGAGAGATCGCAGCCTTCTAGGAATAGGCCGAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.69

Weight (kDa)

7.1

Isoelectric Point (pI)

63.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 263, 375
AciI CCGC 3 cut(s) 52, 239, 380
AclWI GGATC 1 cut(s) 397
AcoI YGGCCR 1 cut(s) 210
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 3 cut(s) 65, 71, 386
AluBI AGCT 2 cut(s) 110, 399
AluI AGCT 2 cut(s) 110, 399
Alw26I GTCTC 2 cut(s) 153, 332
AlwI GGATC 1 cut(s) 397
Ama87I CYCGRG 2 cut(s) 65, 329
AoxI GGCC 4 cut(s) 4, 62, 210, 454
ApeKI GCWGC 1 cut(s) 438
AspS9I GGNCC 3 cut(s) 4, 63, 340
AsuC2I CCSGG 5 cut(s) 8, 66, 67, 280, 373
AsuHPI GGTGA 2 cut(s) 39, 361
AvaI CYCGRG 2 cut(s) 65, 329
AvaII GGWCC 1 cut(s) 340
BanI GGYRCC 2 cut(s) 263, 375
BbvI GCAGC 1 cut(s) 450
BccI CCATC 2 cut(s) 94, 221
BceAI ACGGC 3 cut(s) 225, 252, 364
BcnI CCSGG 5 cut(s) 8, 66, 67, 280, 373
BcoDI GTCTC 2 cut(s) 153, 332
BfaI CTAG 1 cut(s) 446
BisI GCNGC 1 cut(s) 439
BlsI GCNGC 1 cut(s) 440
Bme1390I CCNGG 5 cut(s) 8, 66, 67, 280, 373
Bme18I GGWCC 1 cut(s) 340
BmeT110I CYCGRG 2 cut(s) 65, 329
BmgT120I GGNCC 3 cut(s) 4, 63, 340
BmiI GGNNCC 3 cut(s) 265, 342, 377
BmrFI CCNGG 5 cut(s) 8, 66, 67, 280, 373
BmsI GCATC 1 cut(s) 128
BpuEI CTTGAG 1 cut(s) 196
BpuMI CCSGG 5 cut(s) 8, 66, 67, 280, 373
BsaI GGTCTC 1 cut(s) 332
BsaJI CCNNGG 3 cut(s) 23, 59, 65
BsaXI ACNNNNNCTCC 2 cut(s) 401, 431
Bsc4I CCNNNNNNNGG 3 cut(s) 65, 71, 386
Bse118I RCCGGY 1 cut(s) 260
BseDI CCNNGG 3 cut(s) 23, 59, 65
BseGI GGATG 1 cut(s) 48
BseLI CCNNNNNNNGG 3 cut(s) 65, 71, 386
BseXI GCAGC 1 cut(s) 450
BshFI GGCC 4 cut(s) 6, 64, 212, 456
BshNI GGYRCC 2 cut(s) 263, 375
BsiHKCI CYCGRG 2 cut(s) 65, 329
BsiSI CCGG 6 cut(s) 7, 66, 261, 279, 373, 387
BslFI GGGAC 1 cut(s) 124
BslI CCNNNNNNNGG 3 cut(s) 65, 71, 386
BsmAI GTCTC 2 cut(s) 153, 332
BsmFI GGGAC 1 cut(s) 124
BsnI GGCC 4 cut(s) 6, 64, 212, 456
Bso31I GGTCTC 1 cut(s) 332
BsoBI CYCGRG 2 cut(s) 65, 329
Bsp143I GATC 2 cut(s) 389, 433
Bsp19I CCATGG 1 cut(s) 23
BspACI CCGC 3 cut(s) 52, 239, 380
BspANI GGCC 4 cut(s) 6, 64, 212, 456
BspHI TCATGA 1 cut(s) 216
BspLI GGNNCC 3 cut(s) 265, 342, 377
BspPI GGATC 1 cut(s) 397
BspT107I GGYRCC 2 cut(s) 263, 375
BspTNI GGTCTC 1 cut(s) 332
BsrFI RCCGGY 1 cut(s) 260
BssAI RCCGGY 1 cut(s) 260
BssECI CCNNGG 3 cut(s) 23, 59, 65
BssMI GATC 2 cut(s) 389, 433
BssT1I CCWWGG 2 cut(s) 23, 59
BstC8I GCNNGC 4 cut(s) 77, 262, 384, 426
BstDSI CCRYGG 1 cut(s) 23
BstF5I GGATG 1 cut(s) 48
BstKTI GATC 2 cut(s) 392, 436
BstMAI GTCTC 2 cut(s) 153, 332
BstMBI GATC 2 cut(s) 389, 433
BstMWI GCNNNNNNNGC 4 cut(s) 76, 81, 116, 299
BstSCI CCNGG 5 cut(s) 6, 64, 65, 278, 371
BstV1I GCAGC 1 cut(s) 450
BsuRI GGCC 4 cut(s) 6, 64, 212, 456
BtgI CCRYGG 1 cut(s) 23
BtgZI GCGATG 1 cut(s) 274
BtsCI GGATG 1 cut(s) 48
Cac8I GCNNGC 4 cut(s) 77, 262, 384, 426
CciI TCATGA 1 cut(s) 216
Cfr10I RCCGGY 1 cut(s) 260
Cfr13I GGNCC 3 cut(s) 4, 63, 340
Cfr9I CCCGGG 1 cut(s) 65
Csp6I GTAC 1 cut(s) 283
CviAII CATG 4 cut(s) 24, 171, 217, 323
CviQI GTAC 1 cut(s) 283
DpnI GATC 2 cut(s) 391, 435
DpnII GATC 2 cut(s) 389, 433
EaeI YGGCCR 1 cut(s) 210
Eco130I CCWWGG 2 cut(s) 23, 59
Eco31I GGTCTC 1 cut(s) 332
Eco47I GGWCC 1 cut(s) 340
Eco88I CYCGRG 2 cut(s) 65, 329
EcoT14I CCWWGG 2 cut(s) 23, 59
ErhI CCWWGG 2 cut(s) 23, 59
FaeI CATG 4 cut(s) 27, 174, 220, 326
FaqI GGGAC 1 cut(s) 124
FatI CATG 4 cut(s) 23, 170, 216, 322
FauI CCCGC 3 cut(s) 59, 232, 387
Fnu4HI GCNGC 1 cut(s) 439
FokI GGATG 1 cut(s) 55
Fsp4HI GCNGC 1 cut(s) 439
FspBI CTAG 1 cut(s) 446
GluI GCNGC 1 cut(s) 439
HaeIII GGCC 4 cut(s) 6, 64, 212, 456
HapII CCGG 6 cut(s) 7, 66, 261, 279, 373, 387
Hin1II CATG 4 cut(s) 27, 174, 220, 326
HinfI GANTC 3 cut(s) 32, 161, 416
HpaII CCGG 6 cut(s) 7, 66, 261, 279, 373, 387
HphI GGTGA 2 cut(s) 39, 361
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 2 cut(s) 124, 409
Hpy188III TCNNGA 1 cut(s) 217
Hpy8I GTNNAC 1 cut(s) 13
HpyAV CCTTC 2 cut(s) 175, 452
HpyF10VI GCNNNNNNNGC 4 cut(s) 76, 81, 116, 299
Hsp92II CATG 4 cut(s) 27, 174, 220, 326
KroI GCCGGC 1 cut(s) 260
KroNI GCCGGC 1 cut(s) 262
Kzo9I GATC 2 cut(s) 389, 433
LmnI GCTCC 1 cut(s) 404
LpnPI CCDG 9 cut(s) 14, 20, 61, 79, 274, 292, 307, 386, 400
Lsp1109I GCAGC 1 cut(s) 450
LweI GCATC 1 cut(s) 128
MaeI CTAG 1 cut(s) 446
MaeIII GTNAC 1 cut(s) 45
MalI GATC 2 cut(s) 391, 435
MboI GATC 2 cut(s) 389, 433
MboII GAAGA 2 cut(s) 137, 161
MlyI GAGTC 3 cut(s) 26, 155, 425
MmeI TCCRAC 1 cut(s) 393
MnlI CCTC 1 cut(s) 238
MroNI GCCGGC 1 cut(s) 260
MspI CCGG 6 cut(s) 7, 66, 261, 279, 373, 387
MspR9I CCNGG 5 cut(s) 8, 66, 67, 280, 373
MwoI GCNNNNNNNGC 4 cut(s) 76, 81, 116, 299
NaeI GCCGGC 1 cut(s) 262
NciI CCSGG 5 cut(s) 8, 66, 67, 280, 373
NcoI CCATGG 1 cut(s) 23
NdeII GATC 2 cut(s) 389, 433
NgoMIV GCCGGC 1 cut(s) 260
NlaIII CATG 4 cut(s) 27, 174, 220, 326
NlaIV GGNNCC 3 cut(s) 265, 342, 377
NmuCI GTSAC 1 cut(s) 45
PagI TCATGA 1 cut(s) 216
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PdiI GCCGGC 1 cut(s) 262
PkrI GCNGC 1 cut(s) 440
PleI GAGTC 3 cut(s) 26, 155, 424
PpsI GAGTC 3 cut(s) 26, 155, 424
PspN4I GGNNCC 3 cut(s) 265, 342, 377
PspPI GGNCC 3 cut(s) 4, 63, 340
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
SatI GCNGC 1 cut(s) 439
Sau3AI GATC 2 cut(s) 389, 433
Sau96I GGNCC 3 cut(s) 4, 63, 340
SchI GAGTC 3 cut(s) 26, 155, 425
ScrFI CCNGG 5 cut(s) 8, 66, 67, 280, 373
SetI ASST 4 cut(s) 112, 136, 205, 401
SfaNI GCATC 1 cut(s) 128
SinI GGWCC 1 cut(s) 340
SmaI CCCGGG 1 cut(s) 67
SmlI CTYRAG 1 cut(s) 175
SmoI CTYRAG 1 cut(s) 175
SrfI GCCCGGGC 1 cut(s) 67
SsiI CCGC 3 cut(s) 52, 239, 380
SspMI CTAG 1 cut(s) 446
StyD4I CCNGG 5 cut(s) 6, 64, 65, 278, 371
StyI CCWWGG 2 cut(s) 23, 59
TaqI TCGA 1 cut(s) 147
TaqII GACCGA 1 cut(s) 236
TseFI GTSAC 1 cut(s) 45
TseI GCWGC 1 cut(s) 438
Tsp45I GTSAC 1 cut(s) 45
TspDTI ATGAA 1 cut(s) 277
TspGWI ACGGA 1 cut(s) 391
TspMI CCCGGG 1 cut(s) 65
VpaK11BI GGWCC 1 cut(s) 340
XmaI CCCGGG 1 cut(s) 65
XspI CTAG 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.