Rmu_sc0009427.1_g000001

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009427.1
OG0000633
Physical Location & Seq
Forward (+)
1 .. 628
628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009427.1_g000001.1.cds

Sequence Viewer

Length: 628 bp
tgtaaatcgatggcaagcagctaccgctaagtgtcgggacctcaacaaggaactagctgagctggctttcaggaggggcctgagaataggagaatttctctacgggatcaaccataatcctccagctagttacgacgaactgatggccaccgccatcagacatgctcaggccgaattcgaaacatacggagacacgcccagaccagagctaagatttcccacaccgactacgacgattagggatgagccacgaaagagggagtgggtccacagtcatgataggtcaccccatacctcgagcaaaagaagcaaagaatcctcgtccaggtcgaacagttacgagaacacccaccctacccgggagcaaagggcacagcagggtccaaggacaccaccactaccccggtatgaggtgttcacaatcctgaatgcttcatacgagactatatggaacgaaaacagggatgagataccgggacctcccccaagaaaattcccgaagagcaaacttacccagcaggataccggaaaattctgcacttaccaagaggatgccggacacaataccaatctgtgtgttgctttaaaaaatacaatcgagtccctaatccagaggggcaagctccaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

209

Amino Acids

24.13

Weight (kDa)

9.3

Isoelectric Point (pI)

49.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 25, 151
AclWI GGATC 1 cut(s) 114
AcoI YGGCCR 1 cut(s) 145
AcsI RAATTY 4 cut(s) 93, 174, 492, 531
AfiI CCNNNNNNNGG 4 cut(s) 47, 325, 359, 410
AjnI CCWGG 1 cut(s) 324
AluBI AGCT 6 cut(s) 21, 57, 62, 126, 209, 623
AluI AGCT 6 cut(s) 21, 57, 62, 126, 209, 623
Alw26I GTCTC 2 cut(s) 184, 435
AlwI GGATC 1 cut(s) 114
Ama87I CYCGRG 2 cut(s) 296, 358
AoxI GGCC 3 cut(s) 77, 145, 169
ApeKI GCWGC 1 cut(s) 18
ApoI RAATTY 4 cut(s) 93, 174, 492, 531
AspS9I GGNCC 5 cut(s) 38, 77, 266, 381, 477
AsuC2I CCSGG 4 cut(s) 359, 360, 404, 475
AsuHPI GGTGA 1 cut(s) 277
AsuII TTCGAA 1 cut(s) 178
AvaI CYCGRG 2 cut(s) 296, 358
AvaII GGWCC 4 cut(s) 38, 266, 381, 477
BaeGI GKGCMC 1 cut(s) 374
BalI TGGCCA 1 cut(s) 147
BbvI GCAGC 1 cut(s) 30
BccI CCATC 3 cut(s) 4, 137, 162
BciT130I CCWGG 1 cut(s) 326
BciVI GTATCC 1 cut(s) 515
BcnI CCSGG 4 cut(s) 359, 360, 404, 475
BcoDI GTCTC 2 cut(s) 184, 435
BfaI CTAG 2 cut(s) 54, 127
BfuI GTATCC 1 cut(s) 515
BisI GCNGC 1 cut(s) 19
BlpI GCTNAGC 1 cut(s) 58
BlsI GCNGC 1 cut(s) 20
Bme1390I CCNGG 5 cut(s) 326, 359, 360, 404, 475
Bme18I GGWCC 4 cut(s) 38, 266, 381, 477
BmeT110I CYCGRG 2 cut(s) 296, 358
BmgT120I GGNCC 5 cut(s) 38, 77, 266, 381, 477
BmiI GGNNCC 5 cut(s) 39, 78, 267, 382, 478
BmrFI CCNGG 5 cut(s) 326, 359, 360, 404, 475
BmsI GCATC 1 cut(s) 542
BplI GAGNNNNNCTC 2 cut(s) 82, 114
BpmI CTGGAG 1 cut(s) 106
Bpu10I CCTNAGC 1 cut(s) 166
Bpu1102I GCTNAGC 1 cut(s) 58
Bpu14I TTCGAA 1 cut(s) 178
BpuMI CCSGG 4 cut(s) 359, 360, 404, 475
Bsa29I ATCGAT 1 cut(s) 8
BsaJI CCNNGG 3 cut(s) 358, 384, 402
BsaWI WCCGGW 1 cut(s) 525
Bsc4I CCNNNNNNNGG 4 cut(s) 47, 325, 359, 410
BseBI CCWGG 1 cut(s) 326
BseCI ATCGAT 1 cut(s) 8
BseDI CCNNGG 3 cut(s) 358, 384, 402
BseGI GGATG 3 cut(s) 248, 470, 557
BseLI CCNNNNNNNGG 4 cut(s) 47, 325, 359, 410
BseMII CTCAG 3 cut(s) 49, 72, 180
BseSI GKGCMC 1 cut(s) 374
BseXI GCAGC 1 cut(s) 30
BseYI CCCAGC 1 cut(s) 514
BsgI GTGCAG 1 cut(s) 521
BshFI GGCC 3 cut(s) 79, 147, 171
BshVI ATCGAT 1 cut(s) 8
BsiHKCI CYCGRG 2 cut(s) 296, 358
BsiSI CCGG 5 cut(s) 359, 404, 474, 526, 556
BslFI GGGAC 3 cut(s) 51, 490, 587
BslI CCNNNNNNNGG 4 cut(s) 47, 325, 359, 410
BsmAI GTCTC 2 cut(s) 184, 435
BsmFI GGGAC 3 cut(s) 51, 490, 587
BsmI GAATGC 1 cut(s) 434
BsnI GGCC 3 cut(s) 79, 147, 171
BsoBI CYCGRG 2 cut(s) 296, 358
Bsp119I TTCGAA 1 cut(s) 178
Bsp1286I GDGCHC 1 cut(s) 374
Bsp143I GATC 1 cut(s) 106
Bsp1720I GCTNAGC 1 cut(s) 58
BspACI CCGC 2 cut(s) 25, 151
BspANI GGCC 3 cut(s) 79, 147, 171
BspCNI CTCAG 3 cut(s) 50, 73, 179
BspDI ATCGAT 1 cut(s) 8
BspHI TCATGA 1 cut(s) 275
BspLI GGNNCC 5 cut(s) 39, 78, 267, 382, 478
BspPI GGATC 1 cut(s) 114
BspQI GCTCTTC 1 cut(s) 495
BspT104I TTCGAA 1 cut(s) 178
BssECI CCNNGG 3 cut(s) 358, 384, 402
BssMI GATC 1 cut(s) 106
BssT1I CCWWGG 1 cut(s) 384
Bst2UI CCWGG 1 cut(s) 326
Bst4CI ACNGT 2 cut(s) 273, 336
Bst6I CTCTTC 1 cut(s) 495
BstBI TTCGAA 1 cut(s) 178
BstC8I GCNNGC 3 cut(s) 16, 64, 621
BstDEI CTNAG 5 cut(s) 28, 58, 81, 166, 210
BstEII GGTNACC 1 cut(s) 283
BstENI CCTNNNNNAGG 2 cut(s) 45, 323
BstF5I GGATG 3 cut(s) 248, 470, 557
BstKTI GATC 1 cut(s) 109
BstMAI GTCTC 2 cut(s) 184, 435
BstMBI GATC 1 cut(s) 106
BstMWI GCNNNNNNNGC 3 cut(s) 24, 63, 307
BstNI CCWGG 1 cut(s) 326
BstNSI RCATGY 1 cut(s) 165
BstPI GGTNACC 1 cut(s) 283
BstSCI CCNGG 5 cut(s) 324, 357, 358, 402, 473
BstSLI GKGCMC 1 cut(s) 374
BstV1I GCAGC 1 cut(s) 30
Bsu15I ATCGAT 1 cut(s) 8
BsuI GTATCC 1 cut(s) 515
BsuRI GGCC 3 cut(s) 79, 147, 171
BsuTUI ATCGAT 1 cut(s) 8
BtsCI GGATG 3 cut(s) 248, 470, 557
Cac8I GCNNGC 3 cut(s) 16, 64, 621
CciI TCATGA 1 cut(s) 275
Cfr13I GGNCC 5 cut(s) 38, 77, 266, 381, 477
Cfr9I CCCGGG 1 cut(s) 358
ClaI ATCGAT 1 cut(s) 8
CviAII CATG 2 cut(s) 162, 276
DdeI CTNAG 5 cut(s) 28, 58, 81, 166, 210
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
DraI TTTAAA 1 cut(s) 586
EaeI YGGCCR 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 495
EarI CTCTTC 1 cut(s) 495
Eco130I CCWWGG 1 cut(s) 384
Eco47I GGWCC 4 cut(s) 38, 266, 381, 477
Eco88I CYCGRG 2 cut(s) 296, 358
Eco91I GGTNACC 1 cut(s) 283
EcoNI CCTNNNNNAGG 2 cut(s) 45, 323
EcoO109I RGGNCCY 3 cut(s) 38, 77, 477
EcoO65I GGTNACC 1 cut(s) 283
EcoRI GAATTC 1 cut(s) 174
EcoRII CCWGG 1 cut(s) 324
EcoT14I CCWWGG 1 cut(s) 384
ErhI CCWWGG 1 cut(s) 384
FaeI CATG 2 cut(s) 165, 279
FaiI YATR 9 cut(s) 115, 163, 185, 277, 292, 409, 437, 447, 449
FaqI GGGAC 3 cut(s) 51, 490, 587
FatI CATG 2 cut(s) 161, 275
Fnu4HI GCNGC 1 cut(s) 19
FokI GGATG 3 cut(s) 255, 477, 564
Fsp4HI GCNGC 1 cut(s) 19
FspBI CTAG 2 cut(s) 54, 127
GluI GCNGC 1 cut(s) 19
GsaI CCCAGC 1 cut(s) 518
GsuI CTGGAG 1 cut(s) 106
HaeIII GGCC 3 cut(s) 79, 147, 171
HapII CCGG 5 cut(s) 359, 404, 474, 526, 556
Hin1II CATG 2 cut(s) 165, 279
HinfI GANTC 2 cut(s) 315, 600
HpaII CCGG 5 cut(s) 359, 404, 474, 526, 556
HphI GGTGA 1 cut(s) 277
Hpy166II GTNNAC 2 cut(s) 269, 418
Hpy188I TCNGA 1 cut(s) 159
Hpy188III TCNNGA 6 cut(s) 36, 71, 276, 425, 497, 611
Hpy8I GTNNAC 2 cut(s) 269, 418
Hpy99I CGWCG 2 cut(s) 138, 236
HpyCH4III ACNGT 2 cut(s) 273, 336
HpyCH4V TGCA 1 cut(s) 538
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 63, 307
HpyF3I CTNAG 5 cut(s) 28, 58, 81, 166, 210
Hsp92II CATG 2 cut(s) 165, 279
Kzo9I GATC 1 cut(s) 106
LguI GCTCTTC 1 cut(s) 495
LmnI GCTCC 2 cut(s) 362, 628
Lsp1109I GCAGC 1 cut(s) 30
LweI GCATC 1 cut(s) 542
MaeI CTAG 2 cut(s) 54, 127
MaeIII GTNAC 3 cut(s) 129, 283, 336
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 1 cut(s) 512
MhlI GDGCHC 1 cut(s) 374
MlsI TGGCCA 1 cut(s) 147
MluCI AATT 4 cut(s) 93, 174, 492, 531
MluNI TGGCCA 1 cut(s) 147
MlyI GAGTC 1 cut(s) 609
Mox20I TGGCCA 1 cut(s) 147
MscI TGGCCA 1 cut(s) 147
MseI TTAA 1 cut(s) 585
MslI CAYNNNNRTG 1 cut(s) 274
Msp20I TGGCCA 1 cut(s) 147
MspI CCGG 5 cut(s) 359, 404, 474, 526, 556
MspR9I CCNGG 5 cut(s) 326, 359, 360, 404, 475
Mva1269I GAATGC 1 cut(s) 434
MvaI CCWGG 1 cut(s) 326
MwoI GCNNNNNNNGC 3 cut(s) 24, 63, 307
NciI CCSGG 4 cut(s) 359, 360, 404, 475
NdeII GATC 1 cut(s) 106
NlaIII CATG 2 cut(s) 165, 279
NlaIV GGNNCC 5 cut(s) 39, 78, 267, 382, 478
NmuCI GTSAC 1 cut(s) 283
NspI RCATGY 1 cut(s) 165
NspV TTCGAA 1 cut(s) 178
PaeR7I CTCGAG 1 cut(s) 296
PagI TCATGA 1 cut(s) 275
PciSI GCTCTTC 1 cut(s) 495
PcsI WCGNNNNNNNCGW 1 cut(s) 327
PctI GAATGC 1 cut(s) 434
PfeI GAWTC 1 cut(s) 315
PkrI GCNGC 1 cut(s) 20
PleI GAGTC 1 cut(s) 608
PpsI GAGTC 1 cut(s) 608
PpuMI RGGWCCY 2 cut(s) 38, 477
Psp5II RGGWCCY 2 cut(s) 38, 477
Psp6I CCWGG 1 cut(s) 324
PspEI GGTNACC 1 cut(s) 283
PspFI CCCAGC 1 cut(s) 514
PspGI CCWGG 1 cut(s) 324
PspN4I GGNNCC 5 cut(s) 39, 78, 267, 382, 478
PspPI GGNCC 5 cut(s) 38, 77, 266, 381, 477
PspPPI RGGWCCY 2 cut(s) 38, 477
PspXI VCTCGAGB 1 cut(s) 296
PsrI GAACNNNNNNTAC 2 cut(s) 399, 431
RseI CAYNNNNRTG 1 cut(s) 274
SapI GCTCTTC 1 cut(s) 495
SaqAI TTAA 1 cut(s) 585
SatI GCNGC 1 cut(s) 19
Sau3AI GATC 1 cut(s) 106
Sau96I GGNCC 5 cut(s) 38, 77, 266, 381, 477
SchI GAGTC 1 cut(s) 609
ScrFI CCNGG 5 cut(s) 326, 359, 360, 404, 475
SduI GDGCHC 1 cut(s) 374
SfaNI GCATC 1 cut(s) 542
Sfr274I CTCGAG 1 cut(s) 296
SfuI TTCGAA 1 cut(s) 178
SinI GGWCC 4 cut(s) 38, 266, 381, 477
SlaI CTCGAG 1 cut(s) 296
SmaI CCCGGG 1 cut(s) 360
SmiMI CAYNNNNRTG 1 cut(s) 274
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
Sse9I AATT 4 cut(s) 93, 174, 492, 531
SsiI CCGC 2 cut(s) 25, 151
SspMI CTAG 2 cut(s) 54, 127
StyD4I CCNGG 5 cut(s) 324, 357, 358, 402, 473
StyI CCWWGG 1 cut(s) 384
TaaI ACNGT 2 cut(s) 273, 336
TaqI TCGA 5 cut(s) 8, 178, 297, 330, 598
TasI AATT 4 cut(s) 93, 174, 492, 531
TfiI GAWTC 1 cut(s) 315
Tru1I TTAA 1 cut(s) 585
Tru9I TTAA 1 cut(s) 585
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 1 cut(s) 18
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 1 cut(s) 424
TspGWI ACGGA 1 cut(s) 202
TspMI CCCGGG 1 cut(s) 358
VpaK11BI GGWCC 4 cut(s) 38, 266, 381, 477
XagI CCTNNNNNAGG 2 cut(s) 45, 323
XapI RAATTY 4 cut(s) 93, 174, 492, 531
XceI RCATGY 1 cut(s) 165
XhoI CTCGAG 1 cut(s) 296
XmaI CCCGGG 1 cut(s) 358
XspI CTAG 2 cut(s) 54, 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.