Rroxscaffold_4G00310550

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000633
Physical Location & Seq
Reverse (-)
32594776 .. 32595159
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00310550.1

Sequence Viewer

Length: 384 bp
ATGGTAGAGCCGAAGAAATGGCAGGCGCAAGGTAAATGTCGCTCGGGCATTAGTATTCACTCCCGCACTTCTACGCCGGAGGCACCGGACACCGGGATTGAAACGCACAGCCTAGGATCCTTAGACCCACAAGGAGTGAACCCACCGGTCATCCTAGACCCTCCGGCATCGGTTTCGAGCCGAAGGCCTTGTGAGCTTGAGATCGCAGCCTTTCGTGAGCTAAGCAAGATCGATAGAGAGACTAAGCTCCTCTTGCAGCAGAGGTTACATGAGTTGGAAGACGAGAACACCGCACTTGCTCGGCGTTGGATCGATGGCACTAGCATAACAAAGCTCTCACTCAAGCTCTTGCTAAAGCTTCGTAGATCATGGCAACATAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.37

Weight (kDa)

9.38

Isoelectric Point (pI)

55.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 82
AciI CCGC 2 cut(s) 64, 291
AclWI GGATC 3 cut(s) 111, 124, 317
AfiI CCNNNNNNNGG 1 cut(s) 92
AgeI ACCGGT 1 cut(s) 145
AgsI TTSAA 1 cut(s) 101
AluBI AGCT 6 cut(s) 196, 220, 247, 334, 346, 358
AluI AGCT 6 cut(s) 196, 220, 247, 334, 346, 358
Alw26I GTCTC 1 cut(s) 233
AlwI GGATC 3 cut(s) 111, 124, 317
Ama87I CYCGRG 1 cut(s) 43
AoxI GGCC 1 cut(s) 185
ApeKI GCWGC 2 cut(s) 206, 256
AsiGI ACCGGT 1 cut(s) 145
AspA2I CCTAGG 1 cut(s) 112
AspLEI GCGC 1 cut(s) 28
AsuC2I CCSGG 1 cut(s) 94
AvaI CYCGRG 1 cut(s) 43
AvrII CCTAGG 1 cut(s) 112
BamHI GGATCC 1 cut(s) 116
BanI GGYRCC 1 cut(s) 82
BbsI GAAGAC 1 cut(s) 285
BbvI GCAGC 2 cut(s) 218, 268
BccI CCATC 1 cut(s) 308
BcgI CGANNNNNNTGC 2 cut(s) 156, 190
BcnI CCSGG 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 233
BfaI CTAG 3 cut(s) 113, 155, 321
BisI GCNGC 2 cut(s) 207, 257
BlnI CCTAGG 1 cut(s) 112
BlpI GCTNAGC 1 cut(s) 221
BlsI GCNGC 2 cut(s) 208, 258
Bme1390I CCNGG 1 cut(s) 94
BmeT110I CYCGRG 1 cut(s) 43
BmiI GGNNCC 2 cut(s) 84, 118
BmrFI CCNGG 1 cut(s) 94
BmsI GCATC 1 cut(s) 176
BpiI GAAGAC 1 cut(s) 285
Bpu1102I GCTNAGC 1 cut(s) 221
BpuEI CTTGAG 2 cut(s) 218, 326
BpuMI CCSGG 1 cut(s) 94
Bsa29I ATCGAT 2 cut(s) 231, 312
BsaJI CCNNGG 1 cut(s) 112
BsaWI WCCGGW 2 cut(s) 85, 145
Bsc4I CCNNNNNNNGG 1 cut(s) 92
Bse118I RCCGGY 1 cut(s) 145
BseCI ATCGAT 2 cut(s) 231, 312
BseDI CCNNGG 1 cut(s) 112
BseGI GGATG 1 cut(s) 150
BseLI CCNNNNNNNGG 1 cut(s) 92
BseRI GAGGAG 1 cut(s) 239
BseXI GCAGC 2 cut(s) 218, 268
BshFI GGCC 1 cut(s) 187
BshNI GGYRCC 1 cut(s) 82
BshTI ACCGGT 1 cut(s) 145
BshVI ATCGAT 2 cut(s) 231, 312
BsiHKCI CYCGRG 1 cut(s) 43
BsiSI CCGG 5 cut(s) 77, 86, 93, 146, 164
BslI CCNNNNNNNGG 1 cut(s) 92
BsmAI GTCTC 1 cut(s) 233
BsnI GGCC 1 cut(s) 187
BsoBI CYCGRG 1 cut(s) 43
Bsp143I GATC 5 cut(s) 116, 201, 228, 309, 365
Bsp1720I GCTNAGC 1 cut(s) 221
BspACI CCGC 2 cut(s) 64, 291
BspANI GGCC 1 cut(s) 187
BspDI ATCGAT 2 cut(s) 231, 312
BspLI GGNNCC 2 cut(s) 84, 118
BspPI GGATC 3 cut(s) 111, 124, 317
BspT107I GGYRCC 1 cut(s) 82
BsrFI RCCGGY 1 cut(s) 145
BssAI RCCGGY 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 112
BssMI GATC 5 cut(s) 116, 201, 228, 309, 365
BssT1I CCWWGG 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 24
BstDEI CTNAG 3 cut(s) 121, 221, 243
BstF5I GGATG 1 cut(s) 150
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 5 cut(s) 119, 204, 231, 312, 368
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 5 cut(s) 116, 201, 228, 309, 365
BstMWI GCNNNNNNNGC 2 cut(s) 193, 253
BstSCI CCNGG 1 cut(s) 92
BstV1I GCAGC 2 cut(s) 218, 268
BstV2I GAAGAC 1 cut(s) 285
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
Bsu15I ATCGAT 2 cut(s) 231, 312
BsuRI GGCC 1 cut(s) 187
BsuTUI ATCGAT 2 cut(s) 231, 312
BtsCI GGATG 1 cut(s) 150
Cac8I GCNNGC 1 cut(s) 24
CfoI GCGC 1 cut(s) 28
Cfr10I RCCGGY 1 cut(s) 145
ClaI ATCGAT 2 cut(s) 231, 312
CspAI ACCGGT 1 cut(s) 145
CviAII CATG 2 cut(s) 269, 369
DdeI CTNAG 3 cut(s) 121, 221, 243
DpnI GATC 5 cut(s) 118, 203, 230, 311, 367
DpnII GATC 5 cut(s) 116, 201, 228, 309, 365
Eco130I CCWWGG 1 cut(s) 112
Eco147I AGGCCT 1 cut(s) 187
Eco88I CYCGRG 1 cut(s) 43
EcoT14I CCWWGG 1 cut(s) 112
ErhI CCWWGG 1 cut(s) 112
FaeI CATG 2 cut(s) 272, 372
FaiI YATR 4 cut(s) 270, 326, 370, 378
FalI AAGNNNNNCTT 2 cut(s) 236, 268
FatI CATG 2 cut(s) 268, 368
FauI CCCGC 1 cut(s) 71
Fnu4HI GCNGC 2 cut(s) 207, 257
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 2 cut(s) 207, 257
FspBI CTAG 3 cut(s) 113, 155, 321
GlaI GCGC 1 cut(s) 27
GluI GCNGC 2 cut(s) 207, 257
HaeIII GGCC 1 cut(s) 187
HapII CCGG 5 cut(s) 77, 86, 93, 146, 164
HhaI GCGC 1 cut(s) 28
Hin1II CATG 2 cut(s) 272, 372
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HindIII AAGCTT 1 cut(s) 356
HpaII CCGG 5 cut(s) 77, 86, 93, 146, 164
Hpy166II GTNNAC 1 cut(s) 139
Hpy188III TCNNGA 1 cut(s) 215
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 1 cut(s) 177
HpyCH4V TGCA 1 cut(s) 256
HpyF10VI GCNNNNNNNGC 2 cut(s) 193, 253
HpyF3I CTNAG 3 cut(s) 121, 221, 243
Hsp92II CATG 2 cut(s) 272, 372
HspAI GCGC 1 cut(s) 26
Kzo9I GATC 5 cut(s) 116, 201, 228, 309, 365
LmnI GCTCC 1 cut(s) 252
LpnPI CCDG 6 cut(s) 8, 90, 99, 106, 159, 177
Lsp1109I GCAGC 2 cut(s) 218, 268
LweI GCATC 1 cut(s) 176
MaeI CTAG 3 cut(s) 113, 155, 321
MaeIII GTNAC 1 cut(s) 264
MalI GATC 5 cut(s) 118, 203, 230, 311, 367
MboI GATC 5 cut(s) 116, 201, 228, 309, 365
MboII GAAGA 2 cut(s) 25, 290
MflI RGATCY 1 cut(s) 116
MmeI TCCRAC 2 cut(s) 255, 287
MnlI CCTC 4 cut(s) 73, 171, 255, 260
MspI CCGG 5 cut(s) 77, 86, 93, 146, 164
MspR9I CCNGG 1 cut(s) 94
MwoI GCNNNNNNNGC 2 cut(s) 193, 253
NciI CCSGG 1 cut(s) 94
NdeII GATC 5 cut(s) 116, 201, 228, 309, 365
NlaIII CATG 2 cut(s) 272, 372
NlaIV GGNNCC 2 cut(s) 84, 118
NmeAIII GCCGAG 1 cut(s) 280
PceI AGGCCT 1 cut(s) 187
PinAI ACCGGT 1 cut(s) 145
PkrI GCNGC 2 cut(s) 208, 258
PspN4I GGNNCC 2 cut(s) 84, 118
PsuI RGATCY 1 cut(s) 116
SatI GCNGC 2 cut(s) 207, 257
Sau3AI GATC 5 cut(s) 116, 201, 228, 309, 365
ScrFI CCNGG 1 cut(s) 94
SetI ASST 8 cut(s) 34, 198, 222, 249, 266, 336, 348, 360
SfaNI GCATC 1 cut(s) 176
SmlI CTYRAG 2 cut(s) 197, 341
SmoI CTYRAG 2 cut(s) 197, 341
SseBI AGGCCT 1 cut(s) 187
SsiI CCGC 2 cut(s) 64, 291
SspMI CTAG 3 cut(s) 113, 155, 321
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 1 cut(s) 92
StyI CCWWGG 1 cut(s) 112
TaqI TCGA 3 cut(s) 176, 231, 312
TseI GCWGC 2 cut(s) 206, 256
XmaJI CCTAGG 1 cut(s) 112
XspI CTAG 3 cut(s) 113, 155, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.