Rmu_co8213206.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8213206.1
OG0000633
Physical Location & Seq
Reverse (-)
45 .. 392
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8213206.1_g000001.1.cds

Sequence Viewer

Length: 348 bp
atgcgagcagagatcgcagccttccgggaacaagccaggatcgatcgggaacagcaaagaatcgatagggagacgaacctcctttcacaacagaggctgcaggagctggaagatggaaacactgcgcttgcccaggctctggaccgtaggcaccagcataatgaggcactcacccaggccctagctagagcatctcaggtaacgacaaagttaaatgttgcccccgtccctggtgtaatcggcatagcggaagccccgtccacaggaggcagtaaccgagtcatccaggtactggtggatctgtatccggagagcctgaggcatatgccaccaccacctttaccctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.76

Weight (kDa)

6.28

Isoelectric Point (pI)

52.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 150
AccB7I CCANNNNNTGG 2 cut(s) 139, 292
AccIII TCCGGA 1 cut(s) 307
AciI CCGC 1 cut(s) 248
AclWI GGATC 2 cut(s) 47, 306
AfaI GTAC 1 cut(s) 291
AfiI CCNNNNNNNGG 4 cut(s) 139, 230, 263, 292
AjnI CCWGG 5 cut(s) 35, 132, 174, 229, 285
AluBI AGCT 2 cut(s) 106, 185
AluI AGCT 2 cut(s) 106, 185
Alw26I GTCTC 1 cut(s) 65
AlwI GGATC 2 cut(s) 47, 306
AlwNI CAGNNNCTG 4 cut(s) 97, 106, 139, 292
Aor13HI TCCGGA 1 cut(s) 307
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 2 cut(s) 17, 97
AspLEI GCGC 1 cut(s) 127
AspS9I GGNCC 2 cut(s) 142, 178
AsuC2I CCSGG 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 163
AvaII GGWCC 1 cut(s) 142
AxyI CCTNAGG 1 cut(s) 317
BanI GGYRCC 1 cut(s) 150
BbvI GCAGC 2 cut(s) 29, 84
BccI CCATC 1 cut(s) 107
BciT130I CCWGG 5 cut(s) 37, 134, 176, 231, 287
BciVI GTATCC 1 cut(s) 315
BcnI CCSGG 1 cut(s) 26
BcoDI GTCTC 1 cut(s) 65
BfaI CTAG 3 cut(s) 182, 186, 346
BfmI CTRYAG 1 cut(s) 98
BfuI GTATCC 1 cut(s) 315
BisI GCNGC 2 cut(s) 18, 98
BlsI GCNGC 2 cut(s) 19, 99
Bme1390I CCNGG 6 cut(s) 26, 37, 134, 176, 231, 287
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 2 cut(s) 142, 178
BmiI GGNNCC 1 cut(s) 152
BmrFI CCNGG 6 cut(s) 26, 37, 134, 176, 231, 287
BmsI GCATC 1 cut(s) 200
BpuMI CCSGG 1 cut(s) 26
Bsa29I ATCGAT 2 cut(s) 42, 63
BsaBI GATNNNNATC 1 cut(s) 303
BsaJI CCNNGG 3 cut(s) 132, 174, 229
BsaWI WCCGGW 1 cut(s) 307
Bsc4I CCNNNNNNNGG 4 cut(s) 139, 230, 263, 292
Bse1I ACTGG 1 cut(s) 297
Bse21I CCTNAGG 1 cut(s) 317
Bse8I GATNNNNATC 1 cut(s) 303
BseAI TCCGGA 1 cut(s) 307
BseBI CCWGG 5 cut(s) 37, 134, 176, 231, 287
BseCI ATCGAT 2 cut(s) 42, 63
BseDI CCNNGG 3 cut(s) 132, 174, 229
BseGI GGATG 1 cut(s) 282
BseJI GATNNNNATC 1 cut(s) 303
BseLI CCNNNNNNNGG 4 cut(s) 139, 230, 263, 292
BseMII CTCAG 2 cut(s) 209, 308
BseNI ACTGG 1 cut(s) 297
BseXI GCAGC 2 cut(s) 29, 84
Bsh1285I CGRYCG 1 cut(s) 46
BshFI GGCC 1 cut(s) 179
BshNI GGYRCC 1 cut(s) 150
BshVI ATCGAT 2 cut(s) 42, 63
BsiEI CGRYCG 1 cut(s) 46
BsiSI CCGG 2 cut(s) 25, 308
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 4 cut(s) 139, 230, 263, 292
BsmAI GTCTC 1 cut(s) 65
BsmBI CGTCTC 1 cut(s) 65
BsmFI GGGAC 1 cut(s) 212
BsnI GGCC 1 cut(s) 179
Bsp13I TCCGGA 1 cut(s) 307
Bsp143I GATC 4 cut(s) 12, 39, 43, 298
BspACI CCGC 1 cut(s) 248
BspANI GGCC 1 cut(s) 179
BspCNI CTCAG 2 cut(s) 208, 309
BspDI ATCGAT 2 cut(s) 42, 63
BspEI TCCGGA 1 cut(s) 307
BspLI GGNNCC 1 cut(s) 152
BspMAI CTGCAG 1 cut(s) 102
BspPI GGATC 2 cut(s) 47, 306
BspT107I GGYRCC 1 cut(s) 150
BsrI ACTGG 1 cut(s) 297
BssECI CCNNGG 3 cut(s) 132, 174, 229
BssMI GATC 4 cut(s) 12, 39, 43, 298
Bst2UI CCWGG 5 cut(s) 37, 134, 176, 231, 287
Bst4CI ACNGT 1 cut(s) 146
BstC8I GCNNGC 2 cut(s) 6, 129
BstDEI CTNAG 2 cut(s) 195, 317
BstF5I GGATG 1 cut(s) 282
BstHHI GCGC 1 cut(s) 127
BstKTI GATC 4 cut(s) 15, 42, 46, 301
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 4 cut(s) 12, 39, 43, 298
BstMCI CGRYCG 1 cut(s) 46
BstMWI GCNNNNNNNGC 2 cut(s) 14, 103
BstNI CCWGG 5 cut(s) 37, 134, 176, 231, 287
BstSCI CCNGG 6 cut(s) 24, 35, 132, 174, 229, 285
BstSFI CTRYAG 1 cut(s) 98
BstV1I GCAGC 2 cut(s) 29, 84
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
Bsu15I ATCGAT 2 cut(s) 42, 63
Bsu36I CCTNAGG 1 cut(s) 317
BsuI GTATCC 1 cut(s) 315
BsuRI GGCC 1 cut(s) 179
BsuTUI ATCGAT 2 cut(s) 42, 63
BtsCI GGATG 1 cut(s) 282
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 2 cut(s) 6, 129
CaiI CAGNNNCTG 4 cut(s) 97, 106, 139, 292
CfoI GCGC 1 cut(s) 127
Cfr13I GGNCC 2 cut(s) 142, 178
ClaI ATCGAT 2 cut(s) 42, 63
Csp6I GTAC 1 cut(s) 290
CviJI RGCY 9 cut(s) 20, 35, 97, 106, 137, 179, 185, 254, 315
CviKI_1 RGCY 9 cut(s) 20, 35, 97, 106, 137, 179, 185, 254, 315
CviQI GTAC 1 cut(s) 290
DdeI CTNAG 2 cut(s) 195, 317
DpnI GATC 4 cut(s) 14, 41, 45, 300
DpnII GATC 4 cut(s) 12, 39, 43, 298
Eco47I GGWCC 1 cut(s) 142
Eco81I CCTNAGG 1 cut(s) 317
EcoO109I RGGNCCY 1 cut(s) 178
EcoRII CCWGG 5 cut(s) 35, 132, 174, 229, 285
Esp3I CGTCTC 1 cut(s) 65
FaiI YATR 4 cut(s) 159, 245, 324, 326
FaqI GGGAC 1 cut(s) 212
FauNDI CATATG 1 cut(s) 324
Fnu4HI GCNGC 2 cut(s) 18, 98
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 2 cut(s) 18, 98
FspBI CTAG 3 cut(s) 182, 186, 346
GlaI GCGC 1 cut(s) 126
GluI GCNGC 2 cut(s) 18, 98
HaeIII GGCC 1 cut(s) 179
HapII CCGG 2 cut(s) 25, 308
HhaI GCGC 1 cut(s) 127
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HinfI GANTC 2 cut(s) 60, 279
HpaII CCGG 2 cut(s) 25, 308
HphI GGTGA 1 cut(s) 163
Hpy166II GTNNAC 1 cut(s) 261
Hpy188III TCNNGA 3 cut(s) 47, 140, 308
Hpy8I GTNNAC 1 cut(s) 261
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 1 cut(s) 146
HpyCH4V TGCA 1 cut(s) 100
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 103
HpyF3I CTNAG 2 cut(s) 195, 317
HspAI GCGC 1 cut(s) 125
Kpn2I TCCGGA 1 cut(s) 307
Kzo9I GATC 4 cut(s) 12, 39, 43, 298
LmnI GCTCC 1 cut(s) 103
Lsp1109I GCAGC 2 cut(s) 29, 84
LweI GCATC 1 cut(s) 200
MaeI CTAG 3 cut(s) 182, 186, 346
MaeIII GTNAC 2 cut(s) 199, 272
MalI GATC 4 cut(s) 14, 41, 45, 300
MboI GATC 4 cut(s) 12, 39, 43, 298
MboII GAAGA 1 cut(s) 122
MflI RGATCY 1 cut(s) 298
MlyI GAGTC 1 cut(s) 288
MnlI CCTC 5 cut(s) 87, 89, 157, 260, 312
MroI TCCGGA 1 cut(s) 307
MseI TTAA 1 cut(s) 212
MspI CCGG 2 cut(s) 25, 308
MspR9I CCNGG 6 cut(s) 26, 37, 134, 176, 231, 287
MvaI CCWGG 5 cut(s) 37, 134, 176, 231, 287
MwoI GCNNNNNNNGC 2 cut(s) 14, 103
NciI CCSGG 1 cut(s) 26
NdeI CATATG 1 cut(s) 324
NdeII GATC 4 cut(s) 12, 39, 43, 298
NlaIV GGNNCC 1 cut(s) 152
PfeI GAWTC 1 cut(s) 60
PflMI CCANNNNNTGG 2 cut(s) 139, 292
PfoI TCCNGGA 1 cut(s) 24
PkrI GCNGC 2 cut(s) 19, 99
Ple19I CGATCG 1 cut(s) 46
PleI GAGTC 1 cut(s) 287
PpsI GAGTC 1 cut(s) 287
Psp6I CCWGG 5 cut(s) 35, 132, 174, 229, 285
PspGI CCWGG 5 cut(s) 35, 132, 174, 229, 285
PspN4I GGNNCC 1 cut(s) 152
PspPI GGNCC 2 cut(s) 142, 178
PstI CTGCAG 1 cut(s) 102
PstNI CAGNNNCTG 4 cut(s) 97, 106, 139, 292
PsuI RGATCY 1 cut(s) 298
PvuI CGATCG 1 cut(s) 46
RsaI GTAC 1 cut(s) 291
RsaNI GTAC 1 cut(s) 290
SaqAI TTAA 1 cut(s) 212
SatI GCNGC 2 cut(s) 18, 98
Sau3AI GATC 4 cut(s) 12, 39, 43, 298
Sau96I GGNCC 2 cut(s) 142, 178
SchI GAGTC 1 cut(s) 288
ScrFI CCNGG 6 cut(s) 26, 37, 134, 176, 231, 287
SetI ASST 6 cut(s) 81, 108, 187, 201, 291, 340
SfaNI GCATC 1 cut(s) 200
SfcI CTRYAG 1 cut(s) 98
SinI GGWCC 1 cut(s) 142
SsiI CCGC 1 cut(s) 248
SspMI CTAG 3 cut(s) 182, 186, 346
StyD4I CCNGG 6 cut(s) 24, 35, 132, 174, 229, 285
TaaI ACNGT 1 cut(s) 146
TaqI TCGA 2 cut(s) 42, 63
TfiI GAWTC 1 cut(s) 60
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
TscAI CASTG 1 cut(s) 127
TseI GCWGC 2 cut(s) 17, 97
TspRI CASTG 1 cut(s) 127
Van91I CCANNNNNTGG 2 cut(s) 139, 292
VpaK11BI GGWCC 1 cut(s) 142
XspI CTAG 3 cut(s) 182, 186, 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.