Rmu_sc0000940.1_g000038

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000940.1
OG0000633
Physical Location & Seq
Forward (+)
164280 .. 164714
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000940.1_g000038.1.cds

Sequence Viewer

Length: 435 bp
atgaatgagccggaagtgacaggagaggagagaagtatcgcccgggcacttgtattctccccgggaacttcatcagcaaaggcgccagctgttcgggaggaaatccatggtctcggatccttggacccaatagtcccggatcaggtgacatccttggacccaatagccttggatcaggtgactccggtatcggaattagagtctatgcgagctgagatcgcagccttcaaggagcagtccaggatcgatcgggaacaacgaagtaccgatagggaaacaaaccgcctcacgcaacggagaatgcaggatttggaagatgaaaatacggcgctggcccgagcactagacaggaggcaccagcacaacgaggcacttactcaggccctggctagagcatcccagctagcagacctgaacgcctccccgataacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

15.94

Weight (kDa)

4.9

Isoelectric Point (pI)

50.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 131
AccB1I GGYRCC 2 cut(s) 82, 354
AciI CCGC 1 cut(s) 283
AclWI GGATC 5 cut(s) 111, 124, 147, 180, 251
AcyI GRCGYC 1 cut(s) 83
AfaI GTAC 1 cut(s) 265
AfiI CCNNNNNNNGG 1 cut(s) 142
AgsI TTSAA 1 cut(s) 229
AjnI CCWGG 2 cut(s) 239, 384
AluBI AGCT 3 cut(s) 89, 212, 403
AluI AGCT 3 cut(s) 89, 212, 403
Alw21I GWGCWC 1 cut(s) 343
Alw26I GTCTC 1 cut(s) 116
AlwI GGATC 5 cut(s) 111, 124, 147, 180, 251
AlwNI CAGNNNCTG 1 cut(s) 385
Ama87I CYCGRG 3 cut(s) 42, 61, 336
AoxI GGCC 2 cut(s) 333, 381
ApeKI GCWGC 1 cut(s) 221
AspLEI GCGC 2 cut(s) 85, 331
AspS9I GGNCC 4 cut(s) 124, 157, 334, 382
AsuC2I CCSGG 5 cut(s) 43, 44, 62, 63, 137
AsuHPI GGTGA 2 cut(s) 157, 190
AsuNHI GCTAGC 1 cut(s) 403
AvaI CYCGRG 3 cut(s) 42, 61, 336
AvaII GGWCC 2 cut(s) 124, 157
BaeGI GKGCMC 1 cut(s) 49
BaeI ACNNNNGTAYC 2 cut(s) 171, 204
BamHI GGATCC 1 cut(s) 116
BanI GGYRCC 2 cut(s) 82, 354
Bbv12I GWGCWC 1 cut(s) 343
BbvI GCAGC 1 cut(s) 233
BceAI ACGGC 1 cut(s) 342
BciT130I CCWGG 2 cut(s) 241, 386
BcnI CCSGG 5 cut(s) 43, 44, 62, 63, 137
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 3 cut(s) 344, 390, 404
BfoI RGCGCY 2 cut(s) 86, 332
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
Bme1390I CCNGG 7 cut(s) 43, 44, 62, 63, 137, 241, 386
Bme18I GGWCC 2 cut(s) 124, 157
BmeT110I CYCGRG 3 cut(s) 42, 61, 336
BmgT120I GGNCC 4 cut(s) 124, 157, 334, 382
BmiI GGNNCC 5 cut(s) 84, 118, 126, 159, 356
BmrFI CCNGG 7 cut(s) 43, 44, 62, 63, 137, 241, 386
BmsI GCATC 1 cut(s) 404
BmtI GCTAGC 1 cut(s) 407
BpuMI CCSGG 5 cut(s) 43, 44, 62, 63, 137
Bsa29I ATCGAT 1 cut(s) 246
BsaHI GRCGYC 1 cut(s) 83
BsaI GGTCTC 1 cut(s) 116
BsaJI CCNNGG 8 cut(s) 42, 60, 61, 106, 120, 153, 168, 384
BsaWI WCCGGW 1 cut(s) 184
Bsc4I CCNNNNNNNGG 1 cut(s) 142
BseBI CCWGG 2 cut(s) 241, 386
BseCI ATCGAT 1 cut(s) 246
BseDI CCNNGG 8 cut(s) 42, 60, 61, 106, 120, 153, 168, 384
BseGI GGATG 2 cut(s) 149, 395
BseLI CCNNNNNNNGG 1 cut(s) 142
BseMII CTCAG 2 cut(s) 204, 392
BseRI GAGGAG 1 cut(s) 41
BseSI GKGCMC 1 cut(s) 49
BseXI GCAGC 1 cut(s) 233
BseYI CCCAGC 1 cut(s) 399
Bsh1285I CGRYCG 1 cut(s) 250
BshFI GGCC 2 cut(s) 335, 383
BshNI GGYRCC 2 cut(s) 82, 354
BshVI ATCGAT 1 cut(s) 246
BsiEI CGRYCG 1 cut(s) 250
BsiHKAI GWGCWC 1 cut(s) 343
BsiHKCI CYCGRG 3 cut(s) 42, 61, 336
BsiSI CCGG 5 cut(s) 11, 43, 62, 137, 185
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 142
BsmAI GTCTC 1 cut(s) 116
BsmFI GGGAC 1 cut(s) 119
BsmI GAATGC 1 cut(s) 306
BsnI GGCC 2 cut(s) 335, 383
Bso31I GGTCTC 1 cut(s) 116
BsoBI CYCGRG 3 cut(s) 42, 61, 336
Bsp1286I GDGCHC 2 cut(s) 49, 343
Bsp143I GATC 6 cut(s) 116, 139, 172, 216, 243, 247
Bsp19I CCATGG 1 cut(s) 106
BspACI CCGC 1 cut(s) 283
BspANI GGCC 2 cut(s) 335, 383
BspCNI CTCAG 2 cut(s) 205, 391
BspDI ATCGAT 1 cut(s) 246
BspLI GGNNCC 5 cut(s) 84, 118, 126, 159, 356
BspOI GCTAGC 1 cut(s) 407
BspPI GGATC 5 cut(s) 111, 124, 147, 180, 251
BspT107I GGYRCC 2 cut(s) 82, 354
BspTNI GGTCTC 1 cut(s) 116
BssECI CCNNGG 8 cut(s) 42, 60, 61, 106, 120, 153, 168, 384
BssMI GATC 6 cut(s) 116, 139, 172, 216, 243, 247
BssNI GRCGYC 1 cut(s) 83
BssT1I CCWWGG 4 cut(s) 106, 120, 153, 168
Bst2UI CCWGG 2 cut(s) 241, 386
BstACI GRCGYC 1 cut(s) 83
BstC8I GCNNGC 4 cut(s) 87, 210, 333, 405
BstDEI CTNAG 2 cut(s) 213, 378
BstDSI CCRYGG 1 cut(s) 106
BstF5I GGATG 2 cut(s) 149, 395
BstH2I RGCGCY 2 cut(s) 86, 332
BstHHI GCGC 2 cut(s) 85, 331
BstKTI GATC 6 cut(s) 119, 142, 175, 219, 246, 250
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 6 cut(s) 116, 139, 172, 216, 243, 247
BstMCI CGRYCG 1 cut(s) 250
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstNI CCWGG 2 cut(s) 241, 386
BstSCI CCNGG 7 cut(s) 41, 42, 60, 61, 135, 239, 384
BstSLI GKGCMC 1 cut(s) 49
BstV1I GCAGC 1 cut(s) 233
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
Bsu15I ATCGAT 1 cut(s) 246
BsuRI GGCC 2 cut(s) 335, 383
BsuTUI ATCGAT 1 cut(s) 246
BtgI CCRYGG 1 cut(s) 106
BtsCI GGATG 2 cut(s) 149, 395
Cac8I GCNNGC 4 cut(s) 87, 210, 333, 405
CaiI CAGNNNCTG 1 cut(s) 385
CfoI GCGC 2 cut(s) 85, 331
Cfr13I GGNCC 4 cut(s) 124, 157, 334, 382
Cfr9I CCCGGG 2 cut(s) 42, 61
ClaI ATCGAT 1 cut(s) 246
Csp6I GTAC 1 cut(s) 264
CviAII CATG 2 cut(s) 107, 432
CviJI RGCY 9 cut(s) 10, 89, 167, 212, 224, 335, 383, 389, 403
CviKI_1 RGCY 9 cut(s) 10, 89, 167, 212, 224, 335, 383, 389, 403
CviQI GTAC 1 cut(s) 264
DdeI CTNAG 2 cut(s) 213, 378
DinI GGCGCC 1 cut(s) 84
DpnI GATC 6 cut(s) 118, 141, 174, 218, 245, 249
DpnII GATC 6 cut(s) 116, 139, 172, 216, 243, 247
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
Eco130I CCWWGG 4 cut(s) 106, 120, 153, 168
Eco31I GGTCTC 1 cut(s) 116
Eco47I GGWCC 2 cut(s) 124, 157
Eco88I CYCGRG 3 cut(s) 42, 61, 336
EcoO109I RGGNCCY 1 cut(s) 382
EcoRII CCWGG 2 cut(s) 239, 384
EcoT14I CCWWGG 4 cut(s) 106, 120, 153, 168
EgeI GGCGCC 1 cut(s) 84
EheI GGCGCC 1 cut(s) 84
ErhI CCWWGG 4 cut(s) 106, 120, 153, 168
FaeI CATG 2 cut(s) 110, 435
FaiI YATR 3 cut(s) 108, 206, 433
FaqI GGGAC 1 cut(s) 119
FatI CATG 2 cut(s) 106, 431
Fnu4HI GCNGC 1 cut(s) 222
FokI GGATG 2 cut(s) 136, 382
Fsp4HI GCNGC 1 cut(s) 222
FspBI CTAG 3 cut(s) 344, 390, 404
GlaI GCGC 2 cut(s) 84, 330
GluI GCNGC 1 cut(s) 222
GsaI CCCAGC 1 cut(s) 403
HaeII RGCGCY 2 cut(s) 86, 332
HaeIII GGCC 2 cut(s) 335, 383
HapII CCGG 5 cut(s) 11, 43, 62, 137, 185
HhaI GCGC 2 cut(s) 85, 331
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 2 cut(s) 110, 435
Hin6I GCGC 2 cut(s) 83, 329
HinP1I GCGC 2 cut(s) 83, 329
HinfI GANTC 2 cut(s) 181, 200
HpaII CCGG 5 cut(s) 11, 43, 62, 137, 185
HphI GGTGA 2 cut(s) 157, 190
Hpy188I TCNGA 2 cut(s) 116, 193
Hpy188III TCNNGA 2 cut(s) 95, 251
HpyAV CCTTC 1 cut(s) 235
HpyCH4V TGCA 1 cut(s) 304
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 2 cut(s) 213, 378
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 2 cut(s) 110, 435
HspAI GCGC 2 cut(s) 83, 329
KasI GGCGCC 1 cut(s) 82
Kzo9I GATC 6 cut(s) 116, 139, 172, 216, 243, 247
LmnI GCTCC 1 cut(s) 232
Lsp1109I GCAGC 1 cut(s) 233
LweI GCATC 1 cut(s) 404
MaeI CTAG 3 cut(s) 344, 390, 404
MaeIII GTNAC 3 cut(s) 16, 145, 178
MalI GATC 6 cut(s) 118, 141, 174, 218, 245, 249
MboI GATC 6 cut(s) 116, 139, 172, 216, 243, 247
MboII GAAGA 1 cut(s) 326
MflI RGATCY 1 cut(s) 116
MhlI GDGCHC 2 cut(s) 49, 343
MluCI AATT 1 cut(s) 194
Mly113I GGCGCC 1 cut(s) 83
MlyI GAGTC 2 cut(s) 175, 209
MnlI CCTC 6 cut(s) 19, 91, 296, 345, 361, 430
MspA1I CMGCKG 1 cut(s) 89
MspI CCGG 5 cut(s) 11, 43, 62, 137, 185
MspR9I CCNGG 7 cut(s) 43, 44, 62, 63, 137, 241, 386
Mva1269I GAATGC 1 cut(s) 306
MvaI CCWGG 2 cut(s) 241, 386
MwoI GCNNNNNNNGC 1 cut(s) 218
NarI GGCGCC 1 cut(s) 83
NciI CCSGG 5 cut(s) 43, 44, 62, 63, 137
NcoI CCATGG 1 cut(s) 106
NdeII GATC 6 cut(s) 116, 139, 172, 216, 243, 247
NheI GCTAGC 1 cut(s) 403
NlaIII CATG 2 cut(s) 110, 435
NlaIV GGNNCC 5 cut(s) 84, 118, 126, 159, 356
NmuCI GTSAC 3 cut(s) 16, 145, 178
PcsI WCGNNNNNNNCGW 1 cut(s) 256
PctI GAATGC 1 cut(s) 306
PfoI TCCNGGA 2 cut(s) 135, 239
PkrI GCNGC 1 cut(s) 223
Ple19I CGATCG 1 cut(s) 250
PleI GAGTC 2 cut(s) 175, 208
PluTI GGCGCC 1 cut(s) 86
PpsI GAGTC 2 cut(s) 175, 208
Psp6I CCWGG 2 cut(s) 239, 384
PspFI CCCAGC 1 cut(s) 399
PspGI CCWGG 2 cut(s) 239, 384
PspN4I GGNNCC 5 cut(s) 84, 118, 126, 159, 356
PspPI GGNCC 4 cut(s) 124, 157, 334, 382
PstNI CAGNNNCTG 1 cut(s) 385
PsuI RGATCY 1 cut(s) 116
PvuI CGATCG 1 cut(s) 250
PvuII CAGCTG 1 cut(s) 89
RsaI GTAC 1 cut(s) 265
RsaNI GTAC 1 cut(s) 264
SatI GCNGC 1 cut(s) 222
Sau3AI GATC 6 cut(s) 116, 139, 172, 216, 243, 247
Sau96I GGNCC 4 cut(s) 124, 157, 334, 382
SchI GAGTC 2 cut(s) 175, 209
ScrFI CCNGG 7 cut(s) 43, 44, 62, 63, 137, 241, 386
SduI GDGCHC 2 cut(s) 49, 343
SetI ASST 6 cut(s) 91, 147, 180, 214, 405, 414
SfaNI GCATC 1 cut(s) 404
SfoI GGCGCC 1 cut(s) 84
SinI GGWCC 2 cut(s) 124, 157
SmaI CCCGGG 2 cut(s) 44, 63
SrfI GCCCGGGC 1 cut(s) 44
Sse9I AATT 1 cut(s) 194
SsiI CCGC 1 cut(s) 283
SspDI GGCGCC 1 cut(s) 82
SspMI CTAG 3 cut(s) 344, 390, 404
StyD4I CCNGG 7 cut(s) 41, 42, 60, 61, 135, 239, 384
StyI CCWWGG 4 cut(s) 106, 120, 153, 168
TaqI TCGA 1 cut(s) 246
TasI AATT 1 cut(s) 194
TseFI GTSAC 3 cut(s) 16, 145, 178
TseI GCWGC 1 cut(s) 221
Tsp45I GTSAC 3 cut(s) 16, 145, 178
TspDTI ATGAA 3 cut(s) 17, 60, 333
TspGWI ACGGA 1 cut(s) 310
TspMI CCCGGG 2 cut(s) 42, 61
VpaK11BI GGWCC 2 cut(s) 124, 157
XmaI CCCGGG 2 cut(s) 42, 61
XspI CTAG 3 cut(s) 344, 390, 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.