Rmu_sc0005137.1_g000028

Belongs to the RNase T2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005137.1
OG0000633
Physical Location & Seq
Reverse (-)
86919 .. 87647
729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005137.1_g000028.1.cds

Sequence Viewer

Length: 555 bp
atggcaccgacctcgtccacagtacacggtcacaggatcatccaggtacctgtggatctgtacccggagtgcttgaggcataggccactaccacctttgccccaacctactcaaagcgacctacctgtaattgatccaaacacggtgttactcttacaaatgagcagctccttgattgcccttcaagcaagggtagaggcagcagagaacagggacacctggtggcccctgatcgcttacgaggaccttccgagtccttttacccaacaggttagaggtgttattcgatcaaacatatcaaagccgttgaaaatttactataagggaattggggacctgtaccagcacctacagtctttccgctcacaaacaagcgccaagggatacacggatgagagggagaatgaaacgttgaaatccttcgtcaaccggtggcaagaggctaccgctaaatgtcgggaccttaataaggaactggctgagctgggttttaggaagggcttaagagccgaggagttcctctacgggatcaattatcatcctctagctagctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribonuclease_T2

Protein Analysis

184

Amino Acids

21.02

Weight (kDa)

7.8

Isoelectric Point (pI)

58.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 46
AccB1I GGYRCC 2 cut(s) 4, 46
AccBSI CCGCTC 1 cut(s) 363
AciI CCGC 2 cut(s) 361, 447
AclI AACGTT 1 cut(s) 410
AclWI GGATC 4 cut(s) 44, 63, 128, 536
AcsI RAATTY 1 cut(s) 312
AdeI CACNNNGTG 1 cut(s) 222
AfaI GTAC 4 cut(s) 24, 48, 62, 341
AfiI CCNNNNNNNGG 1 cut(s) 469
AflII CTTAAG 1 cut(s) 502
AgeI ACCGGT 1 cut(s) 429
AgsI TTSAA 3 cut(s) 185, 310, 415
AjnI CCWGG 2 cut(s) 42, 218
AluBI AGCT 4 cut(s) 168, 484, 548, 552
AluI AGCT 4 cut(s) 168, 484, 548, 552
AlwI GGATC 4 cut(s) 44, 63, 128, 536
AoxI GGCC 2 cut(s) 83, 224
ApeKI GCWGC 2 cut(s) 165, 200
ApoI RAATTY 1 cut(s) 312
AsiGI ACCGGT 1 cut(s) 429
Asp700I GAANNNNTTC 1 cut(s) 419
Asp718I GGTACC 1 cut(s) 46
AspLEI GCGC 1 cut(s) 377
AspS9I GGNCC 4 cut(s) 225, 244, 334, 460
AsuC2I CCSGG 1 cut(s) 65
AsuNHI GCTAGC 1 cut(s) 548
AvaII GGWCC 3 cut(s) 244, 334, 460
BanI GGYRCC 2 cut(s) 4, 46
BbvI GCAGC 2 cut(s) 177, 212
BceAI ACGGC 1 cut(s) 289
BcgI CGANNNNNNTGC 1 cut(s) 28
BciT130I CCWGG 2 cut(s) 44, 220
BciVI GTATCC 1 cut(s) 377
BcnI CCSGG 1 cut(s) 65
BfaI CTAG 2 cut(s) 545, 549
BfmI CTRYAG 1 cut(s) 350
BfoI RGCGCY 1 cut(s) 378
BfrI CTTAAG 1 cut(s) 502
BfuI GTATCC 1 cut(s) 377
BisI GCNGC 2 cut(s) 166, 201
BlpI GCTNAGC 1 cut(s) 480
BlsI GCNGC 2 cut(s) 167, 202
Bme1390I CCNGG 3 cut(s) 44, 65, 220
Bme18I GGWCC 3 cut(s) 244, 334, 460
BmgT120I GGNCC 4 cut(s) 225, 244, 334, 460
BmiI GGNNCC 5 cut(s) 6, 48, 227, 335, 461
BmrFI CCNGG 3 cut(s) 44, 65, 220
BmtI GCTAGC 1 cut(s) 552
Bpu1102I GCTNAGC 1 cut(s) 480
BpuEI CTTGAG 1 cut(s) 94
BpuMI CCSGG 1 cut(s) 65
BsaJI CCNNGG 2 cut(s) 378, 510
BsaWI WCCGGW 1 cut(s) 429
Bsc4I CCNNNNNNNGG 1 cut(s) 469
Bse118I RCCGGY 1 cut(s) 429
Bse1I ACTGG 1 cut(s) 480
BseBI CCWGG 2 cut(s) 44, 220
BseDI CCNNGG 2 cut(s) 378, 510
BseGI GGATG 3 cut(s) 39, 397, 538
BseLI CCNNNNNNNGG 1 cut(s) 469
BseMII CTCAG 1 cut(s) 471
BseNI ACTGG 1 cut(s) 480
BseRI GAGGAG 1 cut(s) 527
BseXI GCAGC 2 cut(s) 177, 212
BseYI CCCAGC 1 cut(s) 484
BshFI GGCC 2 cut(s) 85, 226
BshNI GGYRCC 2 cut(s) 4, 46
BshTI ACCGGT 1 cut(s) 429
BsiSI CCGG 2 cut(s) 65, 430
BslFI GGGAC 3 cut(s) 227, 347, 473
BslI CCNNNNNNNGG 1 cut(s) 469
BsmFI GGGAC 3 cut(s) 227, 347, 473
BsnI GGCC 2 cut(s) 85, 226
Bsp143I GATC 6 cut(s) 36, 55, 133, 231, 287, 528
Bsp1720I GCTNAGC 1 cut(s) 480
BspACI CCGC 2 cut(s) 361, 447
BspANI GGCC 2 cut(s) 85, 226
BspCNI CTCAG 1 cut(s) 472
BspLI GGNNCC 5 cut(s) 6, 48, 227, 335, 461
BspOI GCTAGC 1 cut(s) 552
BspPI GGATC 4 cut(s) 44, 63, 128, 536
BspT107I GGYRCC 2 cut(s) 4, 46
BspTI CTTAAG 1 cut(s) 502
BsrBI CCGCTC 1 cut(s) 363
BsrFI RCCGGY 1 cut(s) 429
BsrI ACTGG 1 cut(s) 480
BssAI RCCGGY 1 cut(s) 429
BssECI CCNNGG 2 cut(s) 378, 510
BssMI GATC 6 cut(s) 36, 55, 133, 231, 287, 528
BssT1I CCWWGG 1 cut(s) 378
Bst2UI CCWGG 2 cut(s) 44, 220
Bst4CI ACNGT 4 cut(s) 22, 29, 145, 354
BstAFI CTTAAG 1 cut(s) 502
BstC8I GCNNGC 1 cut(s) 550
BstDEI CTNAG 1 cut(s) 480
BstENI CCTNNNNNAGG 1 cut(s) 467
BstF5I GGATG 3 cut(s) 39, 397, 538
BstH2I RGCGCY 1 cut(s) 378
BstHHI GCGC 1 cut(s) 377
BstKTI GATC 6 cut(s) 39, 58, 136, 234, 290, 531
BstMBI GATC 6 cut(s) 36, 55, 133, 231, 287, 528
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstNI CCWGG 2 cut(s) 44, 220
BstSCI CCNGG 3 cut(s) 42, 63, 218
BstSFI CTRYAG 1 cut(s) 350
BstV1I GCAGC 2 cut(s) 177, 212
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BsuI GTATCC 1 cut(s) 377
BsuRI GGCC 2 cut(s) 85, 226
BtsCI GGATG 3 cut(s) 39, 397, 538
Cac8I GCNNGC 1 cut(s) 550
CfoI GCGC 1 cut(s) 377
Cfr10I RCCGGY 1 cut(s) 429
Cfr13I GGNCC 4 cut(s) 225, 244, 334, 460
CsiI ACCWGGT 1 cut(s) 218
Csp6I GTAC 4 cut(s) 23, 47, 61, 340
CspAI ACCGGT 1 cut(s) 429
CviQI GTAC 4 cut(s) 23, 47, 61, 340
DdeI CTNAG 1 cut(s) 480
DpnI GATC 6 cut(s) 38, 57, 135, 233, 289, 530
DpnII GATC 6 cut(s) 36, 55, 133, 231, 287, 528
DraIII CACNNNGTG 1 cut(s) 222
Eco130I CCWWGG 1 cut(s) 378
Eco47I GGWCC 3 cut(s) 244, 334, 460
EcoNI CCTNNNNNAGG 1 cut(s) 467
EcoO109I RGGNCCY 3 cut(s) 244, 334, 460
EcoRII CCWGG 2 cut(s) 42, 218
EcoT14I CCWWGG 1 cut(s) 378
ErhI CCWWGG 1 cut(s) 378
FaiI YATR 3 cut(s) 81, 296, 321
FaqI GGGAC 3 cut(s) 227, 347, 473
Fnu4HI GCNGC 2 cut(s) 166, 201
FokI GGATG 3 cut(s) 26, 404, 525
Fsp4HI GCNGC 2 cut(s) 166, 201
FspBI CTAG 2 cut(s) 545, 549
GlaI GCGC 1 cut(s) 376
GluI GCNGC 2 cut(s) 166, 201
GsaI CCCAGC 1 cut(s) 488
HaeII RGCGCY 1 cut(s) 378
HaeIII GGCC 2 cut(s) 85, 226
HapII CCGG 2 cut(s) 65, 430
HhaI GCGC 1 cut(s) 377
Hin6I GCGC 1 cut(s) 375
HinP1I GCGC 1 cut(s) 375
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HinfI GANTC 1 cut(s) 253
HpaII CCGG 2 cut(s) 65, 430
Hpy166II GTNNAC 3 cut(s) 18, 25, 427
Hpy188I TCNGA 1 cut(s) 252
Hpy188III TCNNGA 1 cut(s) 458
Hpy8I GTNNAC 3 cut(s) 18, 25, 427
HpyAV CCTTC 4 cut(s) 191, 257, 430, 490
HpyCH4III ACNGT 4 cut(s) 22, 29, 145, 354
HpyCH4IV ACGT 1 cut(s) 410
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpyF3I CTNAG 1 cut(s) 480
HpySE526I ACGT 1 cut(s) 410
HspAI GCGC 1 cut(s) 375
KpnI GGTACC 1 cut(s) 50
Kzo9I GATC 6 cut(s) 36, 55, 133, 231, 287, 528
LmnI GCTCC 1 cut(s) 173
Lsp1109I GCAGC 2 cut(s) 177, 212
MabI ACCWGGT 1 cut(s) 218
MaeI CTAG 2 cut(s) 545, 549
MaeII ACGT 1 cut(s) 410
MaeIII GTNAC 2 cut(s) 29, 147
MalI GATC 6 cut(s) 38, 57, 135, 233, 289, 530
MbiI CCGCTC 1 cut(s) 363
MboI GATC 6 cut(s) 36, 55, 133, 231, 287, 528
MflI RGATCY 1 cut(s) 55
MluCI AATT 4 cut(s) 129, 312, 327, 532
MlyI GAGTC 1 cut(s) 262
MroXI GAANNNNTTC 1 cut(s) 419
MseI TTAA 2 cut(s) 465, 503
MspCI CTTAAG 1 cut(s) 502
MspI CCGG 2 cut(s) 65, 430
MspR9I CCNGG 3 cut(s) 44, 65, 220
MvaI CCWGG 2 cut(s) 44, 220
MwoI GCNNNNNNNGC 1 cut(s) 185
NciI CCSGG 1 cut(s) 65
NdeII GATC 6 cut(s) 36, 55, 133, 231, 287, 528
NheI GCTAGC 1 cut(s) 548
NlaIV GGNNCC 5 cut(s) 6, 48, 227, 335, 461
NmeAIII GCCGAG 1 cut(s) 535
NmuCI GTSAC 1 cut(s) 29
PdmI GAANNNNTTC 1 cut(s) 419
PflFI GACNNNGTC 1 cut(s) 13
PinAI ACCGGT 1 cut(s) 429
PkrI GCNGC 2 cut(s) 167, 202
PleI GAGTC 1 cut(s) 261
PpsI GAGTC 1 cut(s) 261
PpuMI RGGWCCY 3 cut(s) 244, 334, 460
Psp1406I AACGTT 1 cut(s) 410
Psp5II RGGWCCY 3 cut(s) 244, 334, 460
Psp6I CCWGG 2 cut(s) 42, 218
PspFI CCCAGC 1 cut(s) 484
PspGI CCWGG 2 cut(s) 42, 218
PspN4I GGNNCC 5 cut(s) 6, 48, 227, 335, 461
PspPI GGNCC 4 cut(s) 225, 244, 334, 460
PspPPI RGGWCCY 3 cut(s) 244, 334, 460
PsuI RGATCY 1 cut(s) 55
PsyI GACNNNGTC 1 cut(s) 13
RsaI GTAC 4 cut(s) 24, 48, 62, 341
RsaNI GTAC 4 cut(s) 23, 47, 61, 340
SaqAI TTAA 2 cut(s) 465, 503
SatI GCNGC 2 cut(s) 166, 201
Sau3AI GATC 6 cut(s) 36, 55, 133, 231, 287, 528
Sau96I GGNCC 4 cut(s) 225, 244, 334, 460
SchI GAGTC 1 cut(s) 262
ScrFI CCNGG 3 cut(s) 44, 65, 220
SexAI ACCWGGT 1 cut(s) 218
SfcI CTRYAG 1 cut(s) 350
SinI GGWCC 3 cut(s) 244, 334, 460
SmlI CTYRAG 2 cut(s) 73, 502
SmoI CTYRAG 2 cut(s) 73, 502
Sse9I AATT 4 cut(s) 129, 312, 327, 532
SsiI CCGC 2 cut(s) 361, 447
SspMI CTAG 2 cut(s) 545, 549
StyD4I CCNGG 3 cut(s) 42, 63, 218
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 4 cut(s) 22, 29, 145, 354
TaiI ACGT 1 cut(s) 413
TaqI TCGA 1 cut(s) 286
TasI AATT 4 cut(s) 129, 312, 327, 532
TatI WGTACW 1 cut(s) 22
Tru1I TTAA 2 cut(s) 465, 503
Tru9I TTAA 2 cut(s) 465, 503
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 2 cut(s) 165, 200
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 1 cut(s) 420
TspGWI ACGGA 1 cut(s) 404
Tth111I GACNNNGTC 1 cut(s) 13
Vha464I CTTAAG 1 cut(s) 502
VpaK11BI GGWCC 3 cut(s) 244, 334, 460
XagI CCTNNNNNAGG 1 cut(s) 467
XapI RAATTY 1 cut(s) 312
XmnI GAANNNNTTC 1 cut(s) 419
XspI CTAG 2 cut(s) 545, 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.