Rmu_sc0000942.1_g000025

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000942.1
OG0000633
Physical Location & Seq
Reverse (-)
145429 .. 146453
1025 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000942.1_g000025.1.cds

Sequence Viewer

Length: 669 bp
atggggccaaggctcaaggttttaagaaacaaaggccgcatcggtactcccaggtactacgctataggccgggttcacgccccaccatggcgggtctcaaatgggaggccaccctgggcaaggccagcacagcccatctatttacaccacaagaggactgatatggcctcagaagaacctgtgtcccacatcgaggataggggagactcccttcccatgcttgagtataaaaacattagcacaaccaccttttacagaaagccaccagaaacattggcacgccagataggggtaccggacatgaatgagccagaagtgacaggagaggggagaagtgtcgcccgggcactgatattctctccgggaacttcgtcagcagaggcgccagctgttcagggggaaatccatggtctcggatccttggacccgataatcccggatcaggtgactccggtatcggaattggaatctatgcgagctgagatcgcagccttcagggagcagtccagaatcgatcgggaacaacggagtaccgatagggaaacaaaccgcctcacgcaacagagaatgcaggatttggaagatgaaaacacggcgctagcccgagcactagacaggaggcaccagcacaacaaggcactcactcaggccctggctagagcatcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

24.98

Weight (kDa)

9.33

Isoelectric Point (pI)

55.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 292
AccB1I GGYRCC 3 cut(s) 292, 382, 621
AciI CCGC 3 cut(s) 37, 91, 550
AclWI GGATC 3 cut(s) 411, 424, 447
AcuI CTGAAG 1 cut(s) 478
AcyI GRCGYC 1 cut(s) 383
AfaI GTAC 4 cut(s) 46, 56, 294, 532
AfiI CCNNNNNNNGG 5 cut(s) 87, 120, 193, 289, 442
AjnI CCWGG 3 cut(s) 50, 113, 651
AluBI AGCT 2 cut(s) 389, 479
AluI AGCT 2 cut(s) 389, 479
Alw21I GWGCWC 1 cut(s) 610
Alw26I GTCTC 3 cut(s) 100, 198, 416
AlwI GGATC 3 cut(s) 411, 424, 447
AlwNI CAGNNNCTG 1 cut(s) 652
Ama87I CYCGRG 2 cut(s) 342, 603
AoxI GGCC 7 cut(s) 5, 34, 67, 107, 122, 165, 648
ApeKI GCWGC 1 cut(s) 488
Asp718I GGTACC 1 cut(s) 292
AspLEI GCGC 2 cut(s) 385, 598
AspS9I GGNCC 3 cut(s) 5, 424, 649
AsuC2I CCSGG 5 cut(s) 71, 343, 344, 363, 437
AsuHPI GGTGA 1 cut(s) 457
AsuNHI GCTAGC 1 cut(s) 598
AvaI CYCGRG 2 cut(s) 342, 603
AvaII GGWCC 1 cut(s) 424
BaeGI GKGCMC 1 cut(s) 349
BaeI ACNNNNGTAYC 2 cut(s) 438, 471
BamHI GGATCC 1 cut(s) 416
BanI GGYRCC 3 cut(s) 292, 382, 621
Bbv12I GWGCWC 1 cut(s) 610
BbvI GCAGC 1 cut(s) 500
BccI CCATC 1 cut(s) 143
BceAI ACGGC 1 cut(s) 609
BciT130I CCWGG 3 cut(s) 52, 115, 653
BcnI CCSGG 5 cut(s) 71, 343, 344, 363, 437
BcoDI GTCTC 3 cut(s) 100, 198, 416
BfaI CTAG 4 cut(s) 599, 611, 657, 667
BfmI CTRYAG 1 cut(s) 63
BfoI RGCGCY 2 cut(s) 386, 599
BisI GCNGC 2 cut(s) 37, 489
BlsI GCNGC 2 cut(s) 38, 490
Bme1390I CCNGG 8 cut(s) 52, 71, 115, 343, 344, 363, 437, 653
Bme18I GGWCC 1 cut(s) 424
BmeT110I CYCGRG 2 cut(s) 342, 603
BmgT120I GGNCC 3 cut(s) 5, 424, 649
BmiI GGNNCC 6 cut(s) 6, 294, 384, 418, 426, 623
BmrFI CCNGG 8 cut(s) 52, 71, 115, 343, 344, 363, 437, 653
BmsI GCATC 1 cut(s) 48
BmtI GCTAGC 1 cut(s) 602
BpuEI CTTGAG 1 cut(s) 242
BpuMI CCSGG 5 cut(s) 71, 343, 344, 363, 437
Bsa29I ATCGAT 1 cut(s) 513
BsaHI GRCGYC 1 cut(s) 383
BsaI GGTCTC 2 cut(s) 100, 416
BsaJI CCNNGG 9 cut(s) 8, 50, 86, 113, 114, 342, 406, 420, 651
BsaWI WCCGGW 2 cut(s) 295, 451
Bsc4I CCNNNNNNNGG 5 cut(s) 87, 120, 193, 289, 442
BseBI CCWGG 3 cut(s) 52, 115, 653
BseCI ATCGAT 1 cut(s) 513
BseDI CCNNGG 9 cut(s) 8, 50, 86, 113, 114, 342, 406, 420, 651
BseGI GGATG 1 cut(s) 662
BseLI CCNNNNNNNGG 5 cut(s) 87, 120, 193, 289, 442
BseMII CTCAG 3 cut(s) 183, 471, 659
BseSI GKGCMC 1 cut(s) 349
BseXI GCAGC 1 cut(s) 500
Bsh1285I CGRYCG 1 cut(s) 517
BshFI GGCC 7 cut(s) 7, 36, 69, 109, 124, 167, 650
BshNI GGYRCC 3 cut(s) 292, 382, 621
BshVI ATCGAT 1 cut(s) 513
BsiEI CGRYCG 1 cut(s) 517
BsiHKAI GWGCWC 1 cut(s) 610
BsiHKCI CYCGRG 2 cut(s) 342, 603
BsiSI CCGG 6 cut(s) 70, 296, 343, 362, 437, 452
BslFI GGGAC 1 cut(s) 169
BslI CCNNNNNNNGG 5 cut(s) 87, 120, 193, 289, 442
BsmAI GTCTC 3 cut(s) 100, 198, 416
BsmFI GGGAC 1 cut(s) 169
BsmI GAATGC 1 cut(s) 573
BsnI GGCC 7 cut(s) 7, 36, 69, 109, 124, 167, 650
Bso31I GGTCTC 2 cut(s) 100, 416
BsoBI CYCGRG 2 cut(s) 342, 603
Bsp1286I GDGCHC 2 cut(s) 349, 610
Bsp143I GATC 4 cut(s) 416, 439, 483, 514
Bsp19I CCATGG 2 cut(s) 86, 406
BspACI CCGC 3 cut(s) 37, 91, 550
BspANI GGCC 7 cut(s) 7, 36, 69, 109, 124, 167, 650
BspCNI CTCAG 3 cut(s) 182, 472, 658
BspDI ATCGAT 1 cut(s) 513
BspLI GGNNCC 6 cut(s) 6, 294, 384, 418, 426, 623
BspOI GCTAGC 1 cut(s) 602
BspPI GGATC 3 cut(s) 411, 424, 447
BspT107I GGYRCC 3 cut(s) 292, 382, 621
BspTNI GGTCTC 2 cut(s) 100, 416
BssECI CCNNGG 9 cut(s) 8, 50, 86, 113, 114, 342, 406, 420, 651
BssMI GATC 4 cut(s) 416, 439, 483, 514
BssNI GRCGYC 1 cut(s) 383
BssT1I CCWWGG 4 cut(s) 8, 86, 406, 420
Bst2UI CCWGG 3 cut(s) 52, 115, 653
BstACI GRCGYC 1 cut(s) 383
BstC8I GCNNGC 5 cut(s) 126, 280, 387, 477, 600
BstDEI CTNAG 3 cut(s) 169, 480, 645
BstDSI CCRYGG 2 cut(s) 86, 406
BstENI CCTNNNNNAGG 1 cut(s) 118
BstF5I GGATG 1 cut(s) 662
BstH2I RGCGCY 2 cut(s) 386, 599
BstHHI GCGC 2 cut(s) 385, 598
BstKTI GATC 4 cut(s) 419, 442, 486, 517
BstMAI GTCTC 3 cut(s) 100, 198, 416
BstMBI GATC 4 cut(s) 416, 439, 483, 514
BstMCI CGRYCG 1 cut(s) 517
BstMWI GCNNNNNNNGC 3 cut(s) 125, 130, 485
BstNI CCWGG 3 cut(s) 52, 115, 653
BstSCI CCNGG 8 cut(s) 50, 69, 113, 341, 342, 361, 435, 651
BstSFI CTRYAG 1 cut(s) 63
BstSLI GKGCMC 1 cut(s) 349
BstV1I GCAGC 1 cut(s) 500
BstX2I RGATCY 1 cut(s) 416
BstYI RGATCY 1 cut(s) 416
Bsu15I ATCGAT 1 cut(s) 513
BsuRI GGCC 7 cut(s) 7, 36, 69, 109, 124, 167, 650
BsuTUI ATCGAT 1 cut(s) 513
BtgI CCRYGG 2 cut(s) 86, 406
BtsCI GGATG 1 cut(s) 662
BtsIMutI CAGTG 1 cut(s) 347
Cac8I GCNNGC 5 cut(s) 126, 280, 387, 477, 600
CaiI CAGNNNCTG 1 cut(s) 652
CfoI GCGC 2 cut(s) 385, 598
Cfr13I GGNCC 3 cut(s) 5, 424, 649
Cfr9I CCCGGG 1 cut(s) 342
ClaI ATCGAT 1 cut(s) 513
Csp6I GTAC 4 cut(s) 45, 55, 293, 531
CviAII CATG 4 cut(s) 87, 217, 301, 407
CviQI GTAC 4 cut(s) 45, 55, 293, 531
DdeI CTNAG 3 cut(s) 169, 480, 645
DinI GGCGCC 1 cut(s) 384
DpnI GATC 4 cut(s) 418, 441, 485, 516
DpnII GATC 4 cut(s) 416, 439, 483, 514
Eco130I CCWWGG 4 cut(s) 8, 86, 406, 420
Eco31I GGTCTC 2 cut(s) 100, 416
Eco47I GGWCC 1 cut(s) 424
Eco57I CTGAAG 1 cut(s) 478
Eco88I CYCGRG 2 cut(s) 342, 603
EcoNI CCTNNNNNAGG 1 cut(s) 118
EcoO109I RGGNCCY 1 cut(s) 649
EcoRII CCWGG 3 cut(s) 50, 113, 651
EcoT14I CCWWGG 4 cut(s) 8, 86, 406, 420
EgeI GGCGCC 1 cut(s) 384
EheI GGCGCC 1 cut(s) 384
ErhI CCWWGG 4 cut(s) 8, 86, 406, 420
FaeI CATG 4 cut(s) 90, 220, 304, 410
FaiI YATR 8 cut(s) 65, 88, 164, 218, 228, 302, 408, 473
FaqI GGGAC 1 cut(s) 169
FatI CATG 4 cut(s) 86, 216, 300, 406
FauI CCCGC 1 cut(s) 84
Fnu4HI GCNGC 2 cut(s) 37, 489
FokI GGATG 1 cut(s) 649
Fsp4HI GCNGC 2 cut(s) 37, 489
FspBI CTAG 4 cut(s) 599, 611, 657, 667
GlaI GCGC 2 cut(s) 384, 597
GluI GCNGC 2 cut(s) 37, 489
HaeII RGCGCY 2 cut(s) 386, 599
HaeIII GGCC 7 cut(s) 7, 36, 69, 109, 124, 167, 650
HapII CCGG 6 cut(s) 70, 296, 343, 362, 437, 452
HhaI GCGC 2 cut(s) 385, 598
Hin1I GRCGYC 1 cut(s) 383
Hin1II CATG 4 cut(s) 90, 220, 304, 410
Hin6I GCGC 2 cut(s) 383, 596
HinP1I GCGC 2 cut(s) 383, 596
HinfI GANTC 4 cut(s) 206, 448, 467, 510
HpaII CCGG 6 cut(s) 70, 296, 343, 362, 437, 452
HphI GGTGA 1 cut(s) 457
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 3 cut(s) 172, 416, 460
Hpy188III TCNNGA 2 cut(s) 507, 518
Hpy8I GTNNAC 1 cut(s) 76
HpyAV CCTTC 2 cut(s) 221, 502
HpyCH4V TGCA 1 cut(s) 571
HpyF10VI GCNNNNNNNGC 3 cut(s) 125, 130, 485
HpyF3I CTNAG 3 cut(s) 169, 480, 645
Hsp92I GRCGYC 1 cut(s) 383
Hsp92II CATG 4 cut(s) 90, 220, 304, 410
HspAI GCGC 2 cut(s) 383, 596
KasI GGCGCC 1 cut(s) 382
KpnI GGTACC 1 cut(s) 296
Kzo9I GATC 4 cut(s) 416, 439, 483, 514
LmnI GCTCC 1 cut(s) 499
Lsp1109I GCAGC 1 cut(s) 500
LweI GCATC 1 cut(s) 48
MaeI CTAG 4 cut(s) 599, 611, 657, 667
MaeIII GTNAC 2 cut(s) 316, 445
MalI GATC 4 cut(s) 418, 441, 485, 516
MboI GATC 4 cut(s) 416, 439, 483, 514
MboII GAAGA 2 cut(s) 185, 593
MflI RGATCY 1 cut(s) 416
MhlI GDGCHC 2 cut(s) 349, 610
MluCI AATT 1 cut(s) 461
Mly113I GGCGCC 1 cut(s) 383
MlyI GAGTC 2 cut(s) 200, 442
MnlI CCTC 8 cut(s) 99, 147, 178, 187, 319, 373, 563, 612
MseI TTAA 1 cut(s) 23
MspA1I CMGCKG 1 cut(s) 389
MspI CCGG 6 cut(s) 70, 296, 343, 362, 437, 452
MspR9I CCNGG 8 cut(s) 52, 71, 115, 343, 344, 363, 437, 653
Mva1269I GAATGC 1 cut(s) 573
MvaI CCWGG 3 cut(s) 52, 115, 653
MwoI GCNNNNNNNGC 3 cut(s) 125, 130, 485
NarI GGCGCC 1 cut(s) 383
NciI CCSGG 5 cut(s) 71, 343, 344, 363, 437
NcoI CCATGG 2 cut(s) 86, 406
NdeII GATC 4 cut(s) 416, 439, 483, 514
NheI GCTAGC 1 cut(s) 598
NlaIII CATG 4 cut(s) 90, 220, 304, 410
NlaIV GGNNCC 6 cut(s) 6, 294, 384, 418, 426, 623
NmuCI GTSAC 2 cut(s) 316, 445
PasI CCCWGGG 1 cut(s) 114
PctI GAATGC 1 cut(s) 573
PfeI GAWTC 2 cut(s) 467, 510
PfoI TCCNGGA 2 cut(s) 361, 435
PkrI GCNGC 2 cut(s) 38, 490
Ple19I CGATCG 1 cut(s) 517
PleI GAGTC 2 cut(s) 200, 442
PluTI GGCGCC 1 cut(s) 386
PpsI GAGTC 2 cut(s) 200, 442
Psp6I CCWGG 3 cut(s) 50, 113, 651
PspGI CCWGG 3 cut(s) 50, 113, 651
PspN4I GGNNCC 6 cut(s) 6, 294, 384, 418, 426, 623
PspPI GGNCC 3 cut(s) 5, 424, 649
PstNI CAGNNNCTG 1 cut(s) 652
PsuI RGATCY 1 cut(s) 416
PvuI CGATCG 1 cut(s) 517
PvuII CAGCTG 1 cut(s) 389
RsaI GTAC 4 cut(s) 46, 56, 294, 532
RsaNI GTAC 4 cut(s) 45, 55, 293, 531
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 2 cut(s) 37, 489
Sau3AI GATC 4 cut(s) 416, 439, 483, 514
Sau96I GGNCC 3 cut(s) 5, 424, 649
SchI GAGTC 2 cut(s) 200, 442
ScrFI CCNGG 8 cut(s) 52, 71, 115, 343, 344, 363, 437, 653
SduI GDGCHC 2 cut(s) 349, 610
SetI ASST 7 cut(s) 21, 56, 181, 251, 391, 447, 481
SfaNI GCATC 1 cut(s) 48
SfcI CTRYAG 1 cut(s) 63
SfoI GGCGCC 1 cut(s) 384
SinI GGWCC 1 cut(s) 424
SmaI CCCGGG 1 cut(s) 344
SmlI CTYRAG 2 cut(s) 14, 221
SmoI CTYRAG 2 cut(s) 14, 221
SrfI GCCCGGGC 1 cut(s) 344
Sse9I AATT 1 cut(s) 461
SsiI CCGC 3 cut(s) 37, 91, 550
SspDI GGCGCC 1 cut(s) 382
SspMI CTAG 4 cut(s) 599, 611, 657, 667
StyD4I CCNGG 8 cut(s) 50, 69, 113, 341, 342, 361, 435, 651
StyI CCWWGG 4 cut(s) 8, 86, 406, 420
TaqI TCGA 2 cut(s) 192, 513
TasI AATT 1 cut(s) 461
TauI GCSGC 1 cut(s) 39
TfiI GAWTC 2 cut(s) 467, 510
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 1 cut(s) 354
TseFI GTSAC 2 cut(s) 316, 445
TseI GCWGC 1 cut(s) 488
Tsp45I GTSAC 2 cut(s) 316, 445
TspDTI ATGAA 2 cut(s) 317, 600
TspGWI ACGGA 1 cut(s) 541
TspMI CCCGGG 1 cut(s) 342
TspRI CASTG 1 cut(s) 354
VpaK11BI GGWCC 1 cut(s) 424
XagI CCTNNNNNAGG 1 cut(s) 118
XmaI CCCGGG 1 cut(s) 342
XspI CTAG 4 cut(s) 599, 611, 657, 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.