Rmu_sc0000194.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000194.1
OG0000633
Physical Location & Seq
Reverse (-)
11303 .. 11755
453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000194.1_g000007.1.cds

Sequence Viewer

Length: 453 bp
ctggctagagcatcccagctagcaggcgtgaacgctgcctcgataacaggagacaccagcaccgccccagcacctcctacggagggcagtcaaaggttaatccaggtaccggtagacttgttcccggaaagtttgaggtatctaccaccaccaccgttaccacaaccagttcacaatatcccacaggtaaccgacgcaaacacggcattactcgtacaaatgagcaactccttacatgccctgcaggcaagggtacaggccacagaaaatagagacacctggagagctatgaacagttacgaggaccgcccggggcctttcacccaacaggttaaaggagccattacatcgaaaccactgaagattgactatacgggagttggagacccctaccagcatctacaggctttccgatcgcaaacaaacgctaagggatatacggacgaagtgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.29

Weight (kDa)

6.31

Isoelectric Point (pI)

43.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000633)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22376 FvH4_4g15485
rosa_laevigata RLG00000001772
rosa_multiflora Rmu_co7980664.1_g000001 Rmu_co7991850.1_g000001 Rmu_co8069086.1_g000001 Rmu_co8203420.1_g000001 Rmu_co8213206.1_g000001 Rmu_co8240317.1_g000001 Rmu_co8382323.1_g000001 Rmu_co8439419.1_g000001 Rmu_co8463919.1_g000001 Rmu_co8496399.1_g000001 Rmu_co8505885.1_g000001 Rmu_sc0000194.1_g000007 Rmu_sc0000194.1_g000008 Rmu_sc0000279.1_g000005 Rmu_sc0000367.1_g000177 Rmu_sc0000385.1_g000009 Rmu_sc0000423.1_g000016 Rmu_sc0000539.1_g000053 Rmu_sc0000779.1_g000017 Rmu_sc0000940.1_g000038 Rmu_sc0000942.1_g000025 Rmu_sc0001436.1_g000019 Rmu_sc0001477.1_g000004 Rmu_sc0001483.1_g000028 Rmu_sc0001518.1_g000005 Rmu_sc0001565.1_g000021 Rmu_sc0001655.1_g000010 Rmu_sc0001773.1_g000009 Rmu_sc0001782.1_g000037 Rmu_sc0001866.1_g000009 Rmu_sc0002054.1_g000022 Rmu_sc0002075.1_g000001 Rmu_sc0002264.1_g000016 Rmu_sc0002868.1_g000020 Rmu_sc0003033.1_g000062 Rmu_sc0003276.1_g000007 Rmu_sc0003486.1_g000003 Rmu_sc0003760.1_g000026 Rmu_sc0004391.1_g000020 Rmu_sc0004549.1_g000021 Rmu_sc0004835.1_g000002 Rmu_sc0005137.1_g000028 Rmu_sc0005178.1_g000022 Rmu_sc0005406.1_g000004 Rmu_sc0006059.1_g000064 Rmu_sc0006822.1_g000011 Rmu_sc0006997.1_g000014 Rmu_sc0007144.1_g000004 Rmu_sc0007321.1_g000001 Rmu_sc0007677.1_g000001 Rmu_sc0009120.1_g000003 Rmu_sc0009255.1_g000002 Rmu_sc0009427.1_g000001 Rmu_sc0009806.1_g000012 Rmu_sc0010048.1_g000010 Rmu_sc0011416.1_g000001 Rmu_sc0014844.1_g000011 Rmu_sc0018644.1_g000003 Rmu_sc0019345.1_g000006 Rmu_sc0025211.1_g000005 Rmu_sc0029888.1_g000001 Rmu_sc0035796.1_g000001 Rmu_ssc0000381.1_g000017
rosa_roxburghii Rroxscaffold_1G00018250 Rroxscaffold_2G00093100 Rroxscaffold_2G00101670 Rroxscaffold_3G00249740 Rroxscaffold_4G00310550 Rroxscaffold_4G00331340 Rroxscaffold_5G00337050 Rroxscaffold_5G00378590 Rroxscaffold_5G00378600 Rroxscaffold_6G00389000 Rroxscaffold_6G00401050
rosa_rugosa Rorug02G0247700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 106
AccB1I GGYRCC 1 cut(s) 106
AccI GTMKAC 1 cut(s) 114
AciI CCGC 2 cut(s) 63, 307
AcuI CTGAAG 1 cut(s) 380
AfaI GTAC 3 cut(s) 108, 216, 255
AfiI CCNNNNNNNGG 2 cut(s) 83, 109
AgeI ACCGGT 1 cut(s) 109
AjnI CCWGG 2 cut(s) 102, 278
AluBI AGCT 2 cut(s) 19, 287
AluI AGCT 2 cut(s) 19, 287
Alw26I GTCTC 3 cut(s) 45, 267, 378
Ama87I CYCGRG 1 cut(s) 310
AoxI GGCC 2 cut(s) 258, 314
ApeKI GCWGC 1 cut(s) 35
AsiGI ACCGGT 1 cut(s) 109
Asp718I GGTACC 1 cut(s) 106
AspS9I GGNCC 2 cut(s) 304, 314
AsuC2I CCSGG 3 cut(s) 125, 311, 312
AsuHPI GGTGA 1 cut(s) 313
AsuNHI GCTAGC 1 cut(s) 19
AvaI CYCGRG 1 cut(s) 310
AvaII GGWCC 1 cut(s) 304
BanI GGYRCC 1 cut(s) 106
BbvI GCAGC 1 cut(s) 22
BceAI ACGGC 1 cut(s) 219
BciT130I CCWGG 2 cut(s) 104, 280
BcnI CCSGG 3 cut(s) 125, 311, 312
BcoDI GTCTC 3 cut(s) 45, 267, 378
BfaI CTAG 2 cut(s) 6, 20
BfmI CTRYAG 2 cut(s) 242, 401
BglI GCCNNNNNGGC 1 cut(s) 245
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 5 cut(s) 104, 125, 280, 311, 312
Bme18I GGWCC 1 cut(s) 304
BmeT110I CYCGRG 1 cut(s) 310
BmgT120I GGNCC 2 cut(s) 304, 314
BmiI GGNNCC 3 cut(s) 108, 315, 340
BmrFI CCNGG 5 cut(s) 104, 125, 280, 311, 312
BmsI GCATC 2 cut(s) 20, 406
BmtI GCTAGC 1 cut(s) 23
BpmI CTGGAG 1 cut(s) 301
Bpu10I CCTNAGC 1 cut(s) 429
BpuMI CCSGG 3 cut(s) 125, 311, 312
BsaI GGTCTC 1 cut(s) 378
BsaJI CCNNGG 2 cut(s) 310, 311
BsaWI WCCGGW 1 cut(s) 109
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 109
Bse118I RCCGGY 1 cut(s) 109
Bse1I ACTGG 1 cut(s) 167
BseBI CCWGG 2 cut(s) 104, 280
BseDI CCNNGG 2 cut(s) 310, 311
BseGI GGATG 1 cut(s) 11
BseLI CCNNNNNNNGG 2 cut(s) 83, 109
BseNI ACTGG 1 cut(s) 167
BseXI GCAGC 1 cut(s) 22
BseYI CCCAGC 2 cut(s) 15, 67
Bsh1285I CGRYCG 1 cut(s) 416
BshFI GGCC 2 cut(s) 260, 316
BshNI GGYRCC 1 cut(s) 106
BshTI ACCGGT 1 cut(s) 109
BsiEI CGRYCG 1 cut(s) 416
BsiHKCI CYCGRG 1 cut(s) 310
BsiSI CCGG 3 cut(s) 110, 125, 311
BslI CCNNNNNNNGG 2 cut(s) 83, 109
BsmAI GTCTC 3 cut(s) 45, 267, 378
BsnI GGCC 2 cut(s) 260, 316
Bso31I GGTCTC 1 cut(s) 378
BsoBI CYCGRG 1 cut(s) 310
Bsp143I GATC 1 cut(s) 413
BspACI CCGC 2 cut(s) 63, 307
BspANI GGCC 2 cut(s) 260, 316
BspLI GGNNCC 3 cut(s) 108, 315, 340
BspMAI CTGCAG 1 cut(s) 246
BspOI GCTAGC 1 cut(s) 23
BspT107I GGYRCC 1 cut(s) 106
BspTNI GGTCTC 1 cut(s) 378
BsrFI RCCGGY 1 cut(s) 109
BsrI ACTGG 1 cut(s) 167
BssAI RCCGGY 1 cut(s) 109
BssECI CCNNGG 2 cut(s) 310, 311
BssMI GATC 1 cut(s) 413
Bst2UI CCWGG 2 cut(s) 104, 280
Bst4CI ACNGT 2 cut(s) 156, 296
BstC8I GCNNGC 3 cut(s) 21, 25, 246
BstDEI CTNAG 1 cut(s) 429
BstEII GGTNACC 1 cut(s) 187
BstF5I GGATG 1 cut(s) 11
BstKTI GATC 1 cut(s) 416
BstMAI GTCTC 3 cut(s) 45, 267, 378
BstMBI GATC 1 cut(s) 413
BstMCI CGRYCG 1 cut(s) 416
BstMWI GCNNNNNNNGC 2 cut(s) 203, 245
BstNI CCWGG 2 cut(s) 104, 280
BstNSI RCATGY 1 cut(s) 239
BstPI GGTNACC 1 cut(s) 187
BstSCI CCNGG 5 cut(s) 102, 123, 278, 309, 310
BstSFI CTRYAG 2 cut(s) 242, 401
BstV1I GCAGC 1 cut(s) 22
BsuRI GGCC 2 cut(s) 260, 316
BtsCI GGATG 1 cut(s) 11
BtsIMutI CAGTG 1 cut(s) 356
Cac8I GCNNGC 3 cut(s) 21, 25, 246
Cfr10I RCCGGY 1 cut(s) 109
Cfr13I GGNCC 2 cut(s) 304, 314
Cfr9I CCCGGG 1 cut(s) 310
CseI GACGC 1 cut(s) 203
Csp6I GTAC 3 cut(s) 107, 215, 254
CspAI ACCGGT 1 cut(s) 109
CviAII CATG 1 cut(s) 236
CviJI RGCY 7 cut(s) 5, 19, 260, 287, 316, 341, 407
CviKI_1 RGCY 7 cut(s) 5, 19, 260, 287, 316, 341, 407
CviQI GTAC 3 cut(s) 107, 215, 254
DdeI CTNAG 1 cut(s) 429
DpnI GATC 1 cut(s) 415
DpnII GATC 1 cut(s) 413
Eco31I GGTCTC 1 cut(s) 378
Eco47I GGWCC 1 cut(s) 304
Eco57I CTGAAG 1 cut(s) 380
Eco88I CYCGRG 1 cut(s) 310
Eco91I GGTNACC 1 cut(s) 187
EcoO109I RGGNCCY 1 cut(s) 314
EcoO65I GGTNACC 1 cut(s) 187
EcoRII CCWGG 2 cut(s) 102, 278
FaeI CATG 1 cut(s) 239
FaiI YATR 4 cut(s) 237, 290, 372, 438
FatI CATG 1 cut(s) 235
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 2 cut(s) 6, 20
GluI GCNGC 1 cut(s) 36
GsaI CCCAGC 2 cut(s) 19, 71
GsuI CTGGAG 1 cut(s) 301
HaeIII GGCC 2 cut(s) 260, 316
HapII CCGG 3 cut(s) 110, 125, 311
HgaI GACGC 1 cut(s) 203
Hin1II CATG 1 cut(s) 239
HpaII CCGG 3 cut(s) 110, 125, 311
HphI GGTGA 1 cut(s) 313
Hpy166II GTNNAC 3 cut(s) 31, 115, 172
Hpy188I TCNGA 1 cut(s) 413
Hpy8I GTNNAC 3 cut(s) 31, 115, 172
Hpy99I CGWCG 1 cut(s) 197
HpyCH4III ACNGT 2 cut(s) 156, 296
HpyCH4V TGCA 1 cut(s) 244
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 245
HpyF3I CTNAG 1 cut(s) 429
Hsp92II CATG 1 cut(s) 239
KpnI GGTACC 1 cut(s) 110
Kzo9I GATC 1 cut(s) 413
LmnI GCTCC 1 cut(s) 338
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 2 cut(s) 20, 406
MaeI CTAG 2 cut(s) 6, 20
MaeIII GTNAC 3 cut(s) 156, 187, 296
MalI GATC 1 cut(s) 415
MboI GATC 1 cut(s) 413
MboII GAAGA 1 cut(s) 373
MmeI TCCRAC 1 cut(s) 361
MnlI CCTC 5 cut(s) 49, 76, 84, 129, 295
MseI TTAA 2 cut(s) 98, 333
MspI CCGG 3 cut(s) 110, 125, 311
MspR9I CCNGG 5 cut(s) 104, 125, 280, 311, 312
MvaI CCWGG 2 cut(s) 104, 280
MwoI GCNNNNNNNGC 2 cut(s) 203, 245
NciI CCSGG 3 cut(s) 125, 311, 312
NdeII GATC 1 cut(s) 413
NheI GCTAGC 1 cut(s) 19
NlaIII CATG 1 cut(s) 239
NlaIV GGNNCC 3 cut(s) 108, 315, 340
NspI RCATGY 1 cut(s) 239
PfoI TCCNGGA 1 cut(s) 123
PinAI ACCGGT 1 cut(s) 109
PkrI GCNGC 1 cut(s) 37
Ple19I CGATCG 1 cut(s) 416
Psp6I CCWGG 2 cut(s) 102, 278
PspEI GGTNACC 1 cut(s) 187
PspFI CCCAGC 2 cut(s) 15, 67
PspGI CCWGG 2 cut(s) 102, 278
PspN4I GGNNCC 3 cut(s) 108, 315, 340
PspPI GGNCC 2 cut(s) 304, 314
PstI CTGCAG 1 cut(s) 246
PvuI CGATCG 1 cut(s) 416
RsaI GTAC 3 cut(s) 108, 216, 255
RsaNI GTAC 3 cut(s) 107, 215, 254
SaqAI TTAA 2 cut(s) 98, 333
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 1 cut(s) 413
Sau96I GGNCC 2 cut(s) 304, 314
SbfI CCTGCAGG 1 cut(s) 246
ScrFI CCNGG 5 cut(s) 104, 125, 280, 311, 312
SdaI CCTGCAGG 1 cut(s) 246
SetI ASST 9 cut(s) 21, 76, 98, 108, 140, 189, 281, 289, 333
SfaNI GCATC 2 cut(s) 20, 406
SfcI CTRYAG 2 cut(s) 242, 401
SinI GGWCC 1 cut(s) 304
SmaI CCCGGG 1 cut(s) 312
Sse8387I CCTGCAGG 1 cut(s) 246
SsiI CCGC 2 cut(s) 63, 307
SspMI CTAG 2 cut(s) 6, 20
StyD4I CCNGG 5 cut(s) 102, 123, 278, 309, 310
TaaI ACNGT 2 cut(s) 156, 296
TaqI TCGA 2 cut(s) 41, 350
Tru1I TTAA 2 cut(s) 98, 333
Tru9I TTAA 2 cut(s) 98, 333
TscAI CASTG 1 cut(s) 363
TseI GCWGC 1 cut(s) 35
TspDTI ATGAA 1 cut(s) 305
TspGWI ACGGA 1 cut(s) 95
TspMI CCCGGG 1 cut(s) 310
TspRI CASTG 1 cut(s) 363
VpaK11BI GGWCC 1 cut(s) 304
XceI RCATGY 1 cut(s) 239
XmaI CCCGGG 1 cut(s) 310
XmiI GTMKAC 1 cut(s) 114
XspI CTAG 2 cut(s) 6, 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.