MD15G1090100.v1.1

disease resistance

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
6270674 .. 6271237
564 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1090100.v1.1.491

Sequence Viewer

Length: 519 bp
ATGTTGAGTTATCTTCATCTGCCATCGCATCTTAGACAATGCTTTGCCTTTTGCTCATTATTTCCCAAATATTATGAATTCAAGAAGGAAAAGCTGATCCATCTATGGATGGCAGAAGGCTTCGTTCTACAAGAAGGGAGCAAGCGACTAGAAGACATTGGTGACGAGTACTTCGACGACTTATTGTGGATGTCTTTCTTTCAGGAAGTAGAGATTTCTGATACTGATGGCGTAGTTGGATACAGAATGGTTGATGTGATTCATGATCTTGCACGACATGTTGCTGGACAAGAGTTTGTGACACTCGAAGGAGATACTCCACCACTTTATCCATCAGAAATTCGACACTCATCTATAGTTTATACATATGGGGAAATTAGAATTCCAGAAGCACTATATGAAGCAGAGCATTTACGAACTCTATTCTATTATTCATCGGAGAGTTTGGCTTGTCAAGCAACAACAACAACAACAACAAAGCCTTTTCCCACTAAGTGGGATCGGCTATATGAATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

173

Amino Acids

20.18

Weight (kDa)

4.92

Isoelectric Point (pI)

47.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 20 - 91 3.3e-27 Disease resistance protein Winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000400)

Species Orthologous Gene IDs
malus_domestica MD05G1050700.v1.1 MD05G1050800.v1.1 MD08G1110700.v1.1 MD15G1090000.v1.1 MD15G1090100.v1.1 MD15G1090300.v1.1
prunus_persica Prupe.1G541300_v2.0.a1 Prupe.1G541300_v2.0.a1 Prupe.8G077100_v2.0.a1 Prupe.8G077200_v2.0.a1 Prupe.8G077500_v2.0.a1 Prupe.8G077600_v2.0.a1 Prupe.8G211300_v2.0.a1
pyrus_communis pycom05g04280 pycom08g09220 pycom15g08440
rosa_chinensis RchiOBHm_Chr1g0348461 RchiOBHm_Chr1g0348561 RchiOBHm_Chr6g0269201 RchiOBHm_Chr6g0269411 RchiOBHm_Chr6g0269421 RchiOBHm_Chr6g0269431 RchiOBHm_Chr7g0232901 RchiOBHm_Chr7g0232931 RchiOBHm_Chr7g0232961 RchiOBHm_Chr7g0232971
rosa_laevigata RLG00000001310
rosa_multiflora Rmu_sc0000091.1_g000001 Rmu_sc0000091.1_g000002 Rmu_sc0000091.1_g000008 Rmu_sc0000743.1_g000003 Rmu_sc0000743.1_g000004 Rmu_sc0005353.1_g000002 Rmu_sc0008668.1_g000002 Rmu_sc0015938.1_g000001 Rmu_ssc0000018.1_g000023 Rmu_ssc0000291.1_g000019 Rmu_ssc0000291.1_g000020 Rmu_ssc0000291.1_g000026 Rmu_ssc0000291.1_g000027
rosa_roxburghii Rroxscaffold_3G00227800 Rroxscaffold_3G00227820 Rroxscaffold_4G00306930 Rroxscaffold_4G00306950 Rroxscaffold_7G00198730
rosa_rugosa Rorug01G0194900 Rorug01G0194900 Rorug01G0195000 Rorug01G0195100 Rorug06G0045900 Rorug06G0046100 Rorug06G0047500 Rorug06G0047500 Rorug06G0047600 Rorug06G0047700 Rorug07G0276400 Rorug07G0276600 Rorug07G0276800.1 Rorug07G0276900
rosa_samantha Rh1AG213000 Rh1AG213100 Rh1BG179500 Rh1CG197300 Rh1CG197400 Rh1DG209600 Rh6AG166200 Rh6AG168000 Rh6AG168100 Rh6AG168200 Rh6BG171700 Rh6BG171800 Rh6BG173500 Rh6CG165300 Rh6CG167500 Rh6CG167600 Rh6DG156900 Rh6DG159400 Rh6DG159500 Rh6DG159600 Rh7AG431600 Rh7AG431700 Rh7AG431800 Rh7AG432100 Rh7AG432200 Rh7BG404700 Rh7BG404800 Rh7BG404900 Rh7BG405000 Rh7CG450600 Rh7CG450700 Rh7CG450800 Rh7CG451200 Rh7DG421300
rosa_wichuraiana Rw0G004710 Rw0G010410 Rw1G018020 Rw1G018040 Rw6G014350 Rw6G014450 Rw6G014470 Rw7G035660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 495
AclWI GGATC 2 cut(s) 91, 507
AcsI RAATTY 3 cut(s) 77, 339, 381
AdeI CACNNNGTG 1 cut(s) 495
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 1 cut(s) 495
AflIII ACRYGT 1 cut(s) 277
AgsI TTSAA 1 cut(s) 82
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
AlwI GGATC 2 cut(s) 91, 507
ApoI RAATTY 3 cut(s) 77, 339, 381
ArsI GACNNNNNNTTYG 2 cut(s) 155, 187
AsuHPI GGTGA 1 cut(s) 173
BbsI GAAGAC 1 cut(s) 159
BccI CCATC 5 cut(s) 31, 103, 108, 221, 340
BciVI GTATCC 1 cut(s) 233
BfaI CTAG 2 cut(s) 149, 517
BfmI CTRYAG 1 cut(s) 354
BfuI GTATCC 1 cut(s) 233
BmcAI AGTACT 1 cut(s) 170
BmsI GCATC 1 cut(s) 37
BpiI GAAGAC 1 cut(s) 159
Bsc4I CCNNNNNNNGG 1 cut(s) 495
BseGI GGATG 2 cut(s) 114, 195
BseLI CCNNNNNNNGG 1 cut(s) 495
BslI CCNNNNNNNGG 1 cut(s) 495
Bsp143I GATC 3 cut(s) 96, 265, 499
BspHI TCATGA 1 cut(s) 262
BspPI GGATC 2 cut(s) 91, 507
BssMI GATC 3 cut(s) 96, 265, 499
BstC8I GCNNGC 1 cut(s) 143
BstDEI CTNAG 2 cut(s) 32, 492
BstF5I GGATG 2 cut(s) 114, 195
BstKTI GATC 3 cut(s) 99, 268, 502
BstMBI GATC 3 cut(s) 96, 265, 499
BstMWI GCNNNNNNNGC 1 cut(s) 455
BstNSI RCATGY 1 cut(s) 281
BstSFI CTRYAG 1 cut(s) 354
BstV2I GAAGAC 1 cut(s) 159
BsuI GTATCC 1 cut(s) 233
BtgZI GCGATG 1 cut(s) 9
BtsCI GGATG 2 cut(s) 114, 195
Cac8I GCNNGC 1 cut(s) 143
CciI TCATGA 1 cut(s) 262
Csp6I GTAC 1 cut(s) 169
CviAII CATG 2 cut(s) 263, 278
CviJI RGCY 5 cut(s) 94, 120, 449, 481, 505
CviKI_1 RGCY 5 cut(s) 94, 120, 449, 481, 505
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 2 cut(s) 32, 492
DpnI GATC 3 cut(s) 98, 267, 501
DpnII GATC 3 cut(s) 96, 265, 499
DraIII CACNNNGTG 1 cut(s) 495
EcoRI GAATTC 2 cut(s) 77, 381
FaeI CATG 2 cut(s) 266, 281
FatI CATG 2 cut(s) 262, 277
FauNDI CATATG 1 cut(s) 367
FokI GGATG 2 cut(s) 121, 202
FspBI CTAG 2 cut(s) 149, 517
Hin1II CATG 2 cut(s) 266, 281
HinfI GANTC 2 cut(s) 259, 512
HphI GGTGA 1 cut(s) 173
Hpy188I TCNGA 3 cut(s) 220, 337, 439
Hpy188III TCNNGA 4 cut(s) 82, 203, 263, 386
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 4 cut(s) 79, 110, 128, 302
HpyCH4V TGCA 1 cut(s) 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 455
HpyF3I CTNAG 2 cut(s) 32, 492
Hsp92II CATG 2 cut(s) 266, 281
Kzo9I GATC 3 cut(s) 96, 265, 499
LmnI GCTCC 1 cut(s) 138
LpnPI CCDG 3 cut(s) 188, 270, 399
LweI GCATC 1 cut(s) 37
MaeI CTAG 2 cut(s) 149, 517
MaeIII GTNAC 2 cut(s) 161, 298
MalI GATC 3 cut(s) 98, 267, 501
MboI GATC 3 cut(s) 96, 265, 499
MboII GAAGA 2 cut(s) 5, 164
MluCI AATT 4 cut(s) 77, 339, 375, 381
MmeI TCCRAC 1 cut(s) 217
MwoI GCNNNNNNNGC 1 cut(s) 455
NdeI CATATG 1 cut(s) 367
NdeII GATC 3 cut(s) 96, 265, 499
NlaIII CATG 2 cut(s) 266, 281
NmuCI GTSAC 2 cut(s) 161, 298
NspI RCATGY 1 cut(s) 281
PagI TCATGA 1 cut(s) 262
PciI ACATGT 1 cut(s) 277
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PfeI GAWTC 2 cut(s) 259, 512
PflMI CCANNNNNTGG 1 cut(s) 495
PscI ACATGT 1 cut(s) 277
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
Sau3AI GATC 3 cut(s) 96, 265, 499
ScaI AGTACT 1 cut(s) 170
SetI ASST 1 cut(s) 96
SfaNI GCATC 1 cut(s) 37
SfcI CTRYAG 1 cut(s) 354
Sse9I AATT 4 cut(s) 77, 339, 375, 381
SspI AATATT 1 cut(s) 71
SspMI CTAG 2 cut(s) 149, 517
TaqI TCGA 3 cut(s) 174, 306, 343
TasI AATT 4 cut(s) 77, 339, 375, 381
TatI WGTACW 1 cut(s) 168
TfiI GAWTC 2 cut(s) 259, 512
TseFI GTSAC 2 cut(s) 161, 298
Tsp45I GTSAC 2 cut(s) 161, 298
TspDTI ATGAA 5 cut(s) 5, 90, 251, 414, 423
Van91I CCANNNNNTGG 1 cut(s) 495
XapI RAATTY 3 cut(s) 77, 339, 381
XceI RCATGY 1 cut(s) 281
XspI CTAG 2 cut(s) 149, 517
ZrmI AGTACT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.