Rh7BG404900

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000400
Physical Location & Seq
Reverse (-)
45319131 .. 45319904
774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG404900.1

Sequence Viewer

Length: 426 bp
ATGTATAATGTAGTCCACATTGGTATTGAATTCTTAGGTCAAAGTGACAAACCCTTTGCTTCTCTTAAAGAGCTATCCCTTATAGATTTTCTTGAGTTGACTACTTGGAATAACGTGGATTCTGCAGAAGCATTTACAAGCCTTGGCAAAGCAACCAGAAGAAATTGTCCATTGTTAAAAGCCATGCCATGGCTTCCATGCATTCAATACTTGGAGCTGAAGAAATGCGACGAATTGGTAATGAGGTCAGCATCAGAGCTTAAGTCACTGTCCACTCTTGTTATTGACTTCTTTCAAGAGTTGAGATTTATACCAAAGAAGTTGCTGCAGAACAATTCGGGTTTGATGTCATTGACGGTTACATCTTGTCCAGTGCTTCGTTATATTCCTGAAGATCTGGAGTACTCACTGCTCTCAAATCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 map03460
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

141

Amino Acids

16.09

Weight (kDa)

5.67

Isoelectric Point (pI)

47.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000400)

Species Orthologous Gene IDs
malus_domestica MD05G1050700.v1.1 MD05G1050800.v1.1 MD08G1110700.v1.1 MD15G1090000.v1.1 MD15G1090100.v1.1 MD15G1090300.v1.1
prunus_persica Prupe.1G541300_v2.0.a1 Prupe.1G541300_v2.0.a1 Prupe.8G077100_v2.0.a1 Prupe.8G077200_v2.0.a1 Prupe.8G077500_v2.0.a1 Prupe.8G077600_v2.0.a1 Prupe.8G211300_v2.0.a1
pyrus_communis pycom05g04280 pycom08g09220 pycom15g08440
rosa_chinensis RchiOBHm_Chr1g0348461 RchiOBHm_Chr1g0348561 RchiOBHm_Chr6g0269201 RchiOBHm_Chr6g0269411 RchiOBHm_Chr6g0269421 RchiOBHm_Chr6g0269431 RchiOBHm_Chr7g0232901 RchiOBHm_Chr7g0232931 RchiOBHm_Chr7g0232961 RchiOBHm_Chr7g0232971
rosa_laevigata RLG00000001310
rosa_multiflora Rmu_sc0000091.1_g000001 Rmu_sc0000091.1_g000002 Rmu_sc0000091.1_g000008 Rmu_sc0000743.1_g000003 Rmu_sc0000743.1_g000004 Rmu_sc0005353.1_g000002 Rmu_sc0008668.1_g000002 Rmu_sc0015938.1_g000001 Rmu_ssc0000018.1_g000023 Rmu_ssc0000291.1_g000019 Rmu_ssc0000291.1_g000020 Rmu_ssc0000291.1_g000026 Rmu_ssc0000291.1_g000027
rosa_roxburghii Rroxscaffold_3G00227800 Rroxscaffold_3G00227820 Rroxscaffold_4G00306930 Rroxscaffold_4G00306950 Rroxscaffold_7G00198730
rosa_rugosa Rorug01G0194900 Rorug01G0194900 Rorug01G0195000 Rorug01G0195100 Rorug06G0045900 Rorug06G0046100 Rorug06G0047500 Rorug06G0047500 Rorug06G0047600 Rorug06G0047700 Rorug07G0276400 Rorug07G0276600 Rorug07G0276800.1 Rorug07G0276900
rosa_samantha Rh1AG213000 Rh1AG213100 Rh1BG179500 Rh1CG197300 Rh1CG197400 Rh1DG209600 Rh6AG166200 Rh6AG168000 Rh6AG168100 Rh6AG168200 Rh6BG171700 Rh6BG171800 Rh6BG173500 Rh6CG165300 Rh6CG167500 Rh6CG167600 Rh6DG156900 Rh6DG159400 Rh6DG159500 Rh6DG159600 Rh7AG431600 Rh7AG431700 Rh7AG431800 Rh7AG432100 Rh7AG432200 Rh7BG404700 Rh7BG404800 Rh7BG404900 Rh7BG405000 Rh7CG450600 Rh7CG450700 Rh7CG450800 Rh7CG451200 Rh7DG421300
rosa_wichuraiana Rw0G004710 Rw0G010410 Rw1G018020 Rw1G018040 Rw6G014350 Rw6G014450 Rw6G014470 Rw7G035660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 189
AcsI RAATTY 1 cut(s) 29
AcuI CTGAAG 2 cut(s) 239, 411
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 1 cut(s) 189
AflII CTTAAG 1 cut(s) 260
AgsI TTSAA 3 cut(s) 29, 206, 296
AluBI AGCT 3 cut(s) 73, 217, 259
AluI AGCT 3 cut(s) 73, 217, 259
ApeKI GCWGC 1 cut(s) 325
ApoI RAATTY 1 cut(s) 29
ArsI GACNNNNNNTTYG 2 cut(s) 38, 70
BbvI GCAGC 1 cut(s) 312
BfmI CTRYAG 2 cut(s) 123, 326
BfrI CTTAAG 1 cut(s) 260
BglII AGATCT 1 cut(s) 394
BisI GCNGC 1 cut(s) 326
BlsI GCNGC 1 cut(s) 327
BmcAI AGTACT 1 cut(s) 404
BmsI GCATC 1 cut(s) 260
BpmI CTGGAG 1 cut(s) 419
BpuEI CTTGAG 1 cut(s) 113
BsaJI CCNNGG 2 cut(s) 142, 188
Bsc4I CCNNNNNNNGG 1 cut(s) 189
Bse1I ACTGG 1 cut(s) 371
BseDI CCNNGG 2 cut(s) 142, 188
BseLI CCNNNNNNNGG 1 cut(s) 189
BseNI ACTGG 1 cut(s) 371
BseXI GCAGC 1 cut(s) 312
BslI CCNNNNNNNGG 1 cut(s) 189
BsmI GAATGC 1 cut(s) 201
Bsp143I GATC 1 cut(s) 394
Bsp19I CCATGG 1 cut(s) 188
BspMAI CTGCAG 2 cut(s) 127, 330
BspTI CTTAAG 1 cut(s) 260
BsrI ACTGG 1 cut(s) 371
BssECI CCNNGG 2 cut(s) 142, 188
BssMI GATC 1 cut(s) 394
BssT1I CCWWGG 2 cut(s) 142, 188
Bst4CI ACNGT 2 cut(s) 270, 358
BstAFI CTTAAG 1 cut(s) 260
BstDEI CTNAG 1 cut(s) 34
BstDSI CCRYGG 1 cut(s) 188
BstKTI GATC 1 cut(s) 397
BstMBI GATC 1 cut(s) 394
BstSFI CTRYAG 2 cut(s) 123, 326
BstV1I GCAGC 1 cut(s) 312
BstX2I RGATCY 1 cut(s) 394
BstYI RGATCY 1 cut(s) 394
BtgI CCRYGG 1 cut(s) 188
BtsI GCAGTG 1 cut(s) 407
BtsIMutI CAGTG 4 cut(s) 266, 378, 407, 421
Csp6I GTAC 1 cut(s) 403
CviAII CATG 3 cut(s) 184, 189, 198
CviJI RGCY 6 cut(s) 73, 141, 182, 193, 217, 259
CviKI_1 RGCY 6 cut(s) 73, 141, 182, 193, 217, 259
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 1 cut(s) 34
DpnI GATC 1 cut(s) 396
DpnII GATC 1 cut(s) 394
Eco130I CCWWGG 2 cut(s) 142, 188
Eco57I CTGAAG 2 cut(s) 239, 411
EcoRI GAATTC 1 cut(s) 29
EcoT14I CCWWGG 2 cut(s) 142, 188
EcoT22I ATGCAT 1 cut(s) 203
ErhI CCWWGG 2 cut(s) 142, 188
FaeI CATG 3 cut(s) 187, 192, 201
FaiI YATR 7 cut(s) 6, 83, 185, 190, 199, 311, 384
FatI CATG 3 cut(s) 183, 188, 197
Fnu4HI GCNGC 1 cut(s) 326
Fsp4HI GCNGC 1 cut(s) 326
GluI GCNGC 1 cut(s) 326
GsuI CTGGAG 1 cut(s) 419
Hin1II CATG 3 cut(s) 187, 192, 201
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
HinfI GANTC 1 cut(s) 119
Hpy166II GTNNAC 3 cut(s) 16, 99, 273
Hpy188I TCNGA 1 cut(s) 256
Hpy188III TCNNGA 4 cut(s) 92, 296, 389, 398
Hpy8I GTNNAC 3 cut(s) 16, 99, 273
Hpy99I CGWCG 1 cut(s) 233
HpyCH4III ACNGT 2 cut(s) 270, 358
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 3 cut(s) 125, 201, 328
HpyF3I CTNAG 1 cut(s) 34
HpySE526I ACGT 1 cut(s) 114
Hsp92II CATG 3 cut(s) 187, 192, 201
Kzo9I GATC 1 cut(s) 394
LmnI GCTCC 1 cut(s) 214
LpnPI CCDG 4 cut(s) 169, 383, 384, 402
Lsp1109I GCAGC 1 cut(s) 312
LweI GCATC 1 cut(s) 260
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 3 cut(s) 44, 264, 358
MalI GATC 1 cut(s) 396
MboI GATC 1 cut(s) 394
MboII GAAGA 3 cut(s) 171, 232, 404
MflI RGATCY 1 cut(s) 394
MluCI AATT 4 cut(s) 29, 163, 233, 334
MnlI CCTC 1 cut(s) 237
Mph1103I ATGCAT 1 cut(s) 203
MseI TTAA 3 cut(s) 66, 176, 261
MspCI CTTAAG 1 cut(s) 260
Mva1269I GAATGC 1 cut(s) 201
NcoI CCATGG 1 cut(s) 188
NdeII GATC 1 cut(s) 394
NlaIII CATG 3 cut(s) 187, 192, 201
NmuCI GTSAC 2 cut(s) 44, 264
NsiI ATGCAT 1 cut(s) 203
PctI GAATGC 1 cut(s) 201
PfeI GAWTC 1 cut(s) 119
PflMI CCANNNNNTGG 1 cut(s) 189
PkrI GCNGC 1 cut(s) 327
PstI CTGCAG 2 cut(s) 127, 330
PsuI RGATCY 1 cut(s) 394
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
SaqAI TTAA 3 cut(s) 66, 176, 261
SatI GCNGC 1 cut(s) 326
Sau3AI GATC 1 cut(s) 394
ScaI AGTACT 1 cut(s) 404
SetI ASST 6 cut(s) 40, 75, 117, 219, 248, 261
SfaNI GCATC 1 cut(s) 260
SfcI CTRYAG 2 cut(s) 123, 326
SmlI CTYRAG 2 cut(s) 92, 260
SmoI CTYRAG 2 cut(s) 92, 260
Sse9I AATT 4 cut(s) 29, 163, 233, 334
StyI CCWWGG 2 cut(s) 142, 188
TaaI ACNGT 2 cut(s) 270, 358
TaiI ACGT 1 cut(s) 117
TasI AATT 4 cut(s) 29, 163, 233, 334
TatI WGTACW 1 cut(s) 402
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 3 cut(s) 66, 176, 261
Tru9I TTAA 3 cut(s) 66, 176, 261
TscAI CASTG 3 cut(s) 273, 378, 414
TseFI GTSAC 2 cut(s) 44, 264
TseI GCWGC 1 cut(s) 325
Tsp45I GTSAC 2 cut(s) 44, 264
TspRI CASTG 3 cut(s) 273, 378, 414
Van91I CCANNNNNTGG 1 cut(s) 189
Vha464I CTTAAG 1 cut(s) 260
XapI RAATTY 1 cut(s) 29
ZrmI AGTACT 1 cut(s) 404
Zsp2I ATGCAT 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.