Rroxscaffold_3G00227800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000400
Physical Location & Seq
Forward (+)
12072874 .. 12076546
3673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00227800.1

Sequence Viewer

Length: 477 bp
ATGAAAAAGGAACTTCAGGGACCAAGTGCTGCCACTGTGGATCTCCAACAAAAGATTCTTGAAACGCAGGAAGAGCTTAGCGGAGTTCAAAGGACACTGCTTCTTCTAGGCTATGGAGTGGGGTTACGTTCACTGGATATGAGCCTGGAGGTGACTAAGATACTGGAAAGTATTCATCGGAAGAAAAGTTATGGAATGCAGGTAGGGAATGACGCCAAGGTGTTGCAAAGCATTCTGCTTGATGCGGAGAAACTTAGTTGGCAAATTCTATCACGTCCAAATTTGGAAACGAAGGAGATGATTGGTATGATAGTGAGAAAGATTGGAGAGCGGACAAGATATGAGGCCAAGGTGACAAGTAACGATGTAGTTAGAGCTCTAACATGTTGTGGGAAAGACCACGGTGGAGATATTGCACGGGTGGGAAAGACCACATGTAGTGAGGAGGATTGCACGGGTGGGAAAGACCACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.46

Weight (kDa)

7.66

Isoelectric Point (pI)

33.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000400)

Species Orthologous Gene IDs
malus_domestica MD05G1050700.v1.1 MD05G1050800.v1.1 MD08G1110700.v1.1 MD15G1090000.v1.1 MD15G1090100.v1.1 MD15G1090300.v1.1
prunus_persica Prupe.1G541300_v2.0.a1 Prupe.1G541300_v2.0.a1 Prupe.8G077100_v2.0.a1 Prupe.8G077200_v2.0.a1 Prupe.8G077500_v2.0.a1 Prupe.8G077600_v2.0.a1 Prupe.8G211300_v2.0.a1
pyrus_communis pycom05g04280 pycom08g09220 pycom15g08440
rosa_chinensis RchiOBHm_Chr1g0348461 RchiOBHm_Chr1g0348561 RchiOBHm_Chr6g0269201 RchiOBHm_Chr6g0269411 RchiOBHm_Chr6g0269421 RchiOBHm_Chr6g0269431 RchiOBHm_Chr7g0232901 RchiOBHm_Chr7g0232931 RchiOBHm_Chr7g0232961 RchiOBHm_Chr7g0232971
rosa_laevigata RLG00000001310
rosa_multiflora Rmu_sc0000091.1_g000001 Rmu_sc0000091.1_g000002 Rmu_sc0000091.1_g000008 Rmu_sc0000743.1_g000003 Rmu_sc0000743.1_g000004 Rmu_sc0005353.1_g000002 Rmu_sc0008668.1_g000002 Rmu_sc0015938.1_g000001 Rmu_ssc0000018.1_g000023 Rmu_ssc0000291.1_g000019 Rmu_ssc0000291.1_g000020 Rmu_ssc0000291.1_g000026 Rmu_ssc0000291.1_g000027
rosa_roxburghii Rroxscaffold_3G00227800 Rroxscaffold_3G00227820 Rroxscaffold_4G00306930 Rroxscaffold_4G00306950 Rroxscaffold_7G00198730
rosa_rugosa Rorug01G0194900 Rorug01G0194900 Rorug01G0195000 Rorug01G0195100 Rorug06G0045900 Rorug06G0046100 Rorug06G0047500 Rorug06G0047500 Rorug06G0047600 Rorug06G0047700 Rorug07G0276400 Rorug07G0276600 Rorug07G0276800.1 Rorug07G0276900
rosa_samantha Rh1AG213000 Rh1AG213100 Rh1BG179500 Rh1CG197300 Rh1CG197400 Rh1DG209600 Rh6AG166200 Rh6AG168000 Rh6AG168100 Rh6AG168200 Rh6BG171700 Rh6BG171800 Rh6BG173500 Rh6CG165300 Rh6CG167500 Rh6CG167600 Rh6DG156900 Rh6DG159400 Rh6DG159500 Rh6DG159600 Rh7AG431600 Rh7AG431700 Rh7AG431800 Rh7AG432100 Rh7AG432200 Rh7BG404700 Rh7BG404800 Rh7BG404900 Rh7BG405000 Rh7CG450600 Rh7CG450700 Rh7CG450800 Rh7CG451200 Rh7DG421300
rosa_wichuraiana Rw0G004710 Rw0G010410 Rw1G018020 Rw1G018040 Rw6G014350 Rw6G014450 Rw6G014470 Rw7G035660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 190
AccBSI CCGCTC 1 cut(s) 331
AciI CCGC 3 cut(s) 81, 245, 331
AclWI GGATC 1 cut(s) 48
AcsI RAATTY 2 cut(s) 264, 280
AcyI GRCGYC 1 cut(s) 213
AflIII ACRYGT 3 cut(s) 383, 434, 471
AgsI TTSAA 2 cut(s) 62, 89
AjiI CACGTC 1 cut(s) 275
AjnI CCWGG 1 cut(s) 144
AjuI GAANNNNNNNTTGG 2 cut(s) 39, 71
AluBI AGCT 2 cut(s) 76, 377
AluI AGCT 2 cut(s) 76, 377
Alw21I GWGCWC 1 cut(s) 379
AlwI GGATC 1 cut(s) 48
AoxI GGCC 1 cut(s) 345
ApeKI GCWGC 1 cut(s) 29
ApoI RAATTY 2 cut(s) 264, 280
Asp700I GAANNNNTTC 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 20
AsuHPI GGTGA 2 cut(s) 163, 364
AvaII GGWCC 1 cut(s) 20
BanII GRGCYC 1 cut(s) 379
Bbv12I GWGCWC 1 cut(s) 379
BbvI GCAGC 1 cut(s) 16
BciT130I CCWGG 1 cut(s) 146
BfaI CTAG 1 cut(s) 107
BfuAI ACCTGC 1 cut(s) 190
BisI GCNGC 1 cut(s) 30
BlpI GCTNAGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 31
Bme1390I CCNGG 1 cut(s) 146
Bme18I GGWCC 1 cut(s) 20
BmgBI CACGTC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 20
BmiI GGNNCC 1 cut(s) 21
BmrFI CCNGG 1 cut(s) 146
BmsI GCATC 1 cut(s) 232
BpmI CTGGAG 1 cut(s) 167
Bpu1102I GCTNAGC 1 cut(s) 77
BsaHI GRCGYC 1 cut(s) 213
BsaJI CCNNGG 3 cut(s) 216, 348, 400
Bse1I ACTGG 2 cut(s) 138, 168
BseBI CCWGG 1 cut(s) 146
BseDI CCNNGG 3 cut(s) 216, 348, 400
BseNI ACTGG 2 cut(s) 138, 168
BseRI GAGGAG 1 cut(s) 458
BseXI GCAGC 1 cut(s) 16
BshFI GGCC 1 cut(s) 347
BsiHKAI GWGCWC 1 cut(s) 379
BslFI GGGAC 1 cut(s) 33
BsmFI GGGAC 1 cut(s) 33
BsmI GAATGC 2 cut(s) 201, 231
BsnI GGCC 1 cut(s) 347
Bsp1286I GDGCHC 1 cut(s) 379
Bsp143I GATC 1 cut(s) 40
Bsp1720I GCTNAGC 1 cut(s) 77
BspACI CCGC 3 cut(s) 81, 245, 331
BspANI GGCC 1 cut(s) 347
BspLI GGNNCC 1 cut(s) 21
BspMI ACCTGC 1 cut(s) 190
BspPI GGATC 1 cut(s) 48
BspQI GCTCTTC 1 cut(s) 66
BsrBI CCGCTC 1 cut(s) 331
BsrI ACTGG 2 cut(s) 138, 168
BssECI CCNNGG 3 cut(s) 216, 348, 400
BssMI GATC 1 cut(s) 40
BssNI GRCGYC 1 cut(s) 213
BssT1I CCWWGG 2 cut(s) 216, 348
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 2 cut(s) 37, 404
Bst6I CTCTTC 1 cut(s) 66
BstACI GRCGYC 1 cut(s) 213
BstDEI CTNAG 3 cut(s) 77, 156, 254
BstDSI CCRYGG 1 cut(s) 400
BstKTI GATC 1 cut(s) 43
BstMBI GATC 1 cut(s) 40
BstMWI GCNNNNNNNGC 1 cut(s) 73
BstNI CCWGG 1 cut(s) 146
BstNSI RCATGY 3 cut(s) 387, 438, 475
BstSCI CCNGG 1 cut(s) 144
BstV1I GCAGC 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
BsuRI GGCC 1 cut(s) 347
BtgI CCRYGG 1 cut(s) 400
BtrI CACGTC 1 cut(s) 275
BtsI GCAGTG 1 cut(s) 95
BtsIMutI CAGTG 3 cut(s) 33, 95, 131
BveI ACCTGC 1 cut(s) 190
Cfr13I GGNCC 1 cut(s) 20
CseI GACGC 1 cut(s) 221
CviAII CATG 3 cut(s) 384, 435, 472
CviJI RGCY 5 cut(s) 76, 111, 144, 347, 377
CviKI_1 RGCY 5 cut(s) 76, 111, 144, 347, 377
DdeI CTNAG 3 cut(s) 77, 156, 254
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Ecl136II GAGCTC 1 cut(s) 377
Eco130I CCWWGG 2 cut(s) 216, 348
Eco24I GRGCYC 1 cut(s) 379
Eco47I GGWCC 1 cut(s) 20
Eco53kI GAGCTC 1 cut(s) 377
EcoICRI GAGCTC 1 cut(s) 377
EcoRII CCWGG 1 cut(s) 144
EcoT14I CCWWGG 2 cut(s) 216, 348
EcoT38I GRGCYC 1 cut(s) 379
ErhI CCWWGG 2 cut(s) 216, 348
FaeI CATG 3 cut(s) 387, 438, 475
FaiI YATR 8 cut(s) 114, 140, 192, 308, 342, 385, 436, 473
FaqI GGGAC 1 cut(s) 33
FatI CATG 3 cut(s) 383, 434, 471
Fnu4HI GCNGC 1 cut(s) 30
FriOI GRGCYC 1 cut(s) 379
Fsp4HI GCNGC 1 cut(s) 30
FspBI CTAG 1 cut(s) 107
GluI GCNGC 1 cut(s) 30
GsuI CTGGAG 1 cut(s) 167
HaeIII GGCC 1 cut(s) 347
HgaI GACGC 1 cut(s) 221
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 3 cut(s) 387, 438, 475
HinfI GANTC 1 cut(s) 55
HphI GGTGA 2 cut(s) 163, 364
Hpy166II GTNNAC 1 cut(s) 131
Hpy188I TCNGA 1 cut(s) 180
Hpy188III TCNNGA 1 cut(s) 59
Hpy8I GTNNAC 1 cut(s) 131
HpyAV CCTTC 1 cut(s) 286
HpyCH4III ACNGT 2 cut(s) 37, 404
HpyCH4IV ACGT 2 cut(s) 127, 274
HpyCH4V TGCA 4 cut(s) 199, 226, 416, 453
HpyF10VI GCNNNNNNNGC 1 cut(s) 73
HpyF3I CTNAG 3 cut(s) 77, 156, 254
HpySE526I ACGT 2 cut(s) 127, 274
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 3 cut(s) 387, 438, 475
Kzo9I GATC 1 cut(s) 40
LguI GCTCTTC 1 cut(s) 66
LpnPI CCDG 7 cut(s) 2, 53, 119, 131, 149, 158, 185
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 1 cut(s) 232
MaeI CTAG 1 cut(s) 107
MaeII ACGT 2 cut(s) 127, 274
MaeIII GTNAC 4 cut(s) 123, 151, 352, 359
MalI GATC 1 cut(s) 42
MbiI CCGCTC 1 cut(s) 331
MboI GATC 1 cut(s) 40
MboII GAAGA 3 cut(s) 83, 95, 193
MflI RGATCY 1 cut(s) 40
MhlI GDGCHC 1 cut(s) 379
MluCI AATT 2 cut(s) 264, 280
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 4 cut(s) 142, 337, 436, 439
MroXI GAANNNNTTC 1 cut(s) 171
MspR9I CCNGG 1 cut(s) 146
Mva1269I GAATGC 2 cut(s) 201, 231
MvaI CCWGG 1 cut(s) 146
MwoI GCNNNNNNNGC 1 cut(s) 73
NdeII GATC 1 cut(s) 40
NlaIII CATG 3 cut(s) 387, 438, 475
NlaIV GGNNCC 1 cut(s) 21
NmuCI GTSAC 2 cut(s) 151, 352
NspI RCATGY 3 cut(s) 387, 438, 475
PciI ACATGT 3 cut(s) 383, 434, 471
PciSI GCTCTTC 1 cut(s) 66
PctI GAATGC 2 cut(s) 201, 231
PdmI GAANNNNTTC 1 cut(s) 171
PfeI GAWTC 1 cut(s) 55
PkrI GCNGC 1 cut(s) 31
PscI ACATGT 3 cut(s) 383, 434, 471
Psp124BI GAGCTC 1 cut(s) 379
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 21
PspPI GGNCC 1 cut(s) 20
PsuI RGATCY 1 cut(s) 40
SacI GAGCTC 1 cut(s) 379
SapI GCTCTTC 1 cut(s) 66
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 1 cut(s) 40
Sau96I GGNCC 1 cut(s) 20
ScrFI CCNGG 1 cut(s) 146
SduI GDGCHC 1 cut(s) 379
SetI ASST 8 cut(s) 78, 130, 153, 204, 222, 277, 354, 379
SfaNI GCATC 1 cut(s) 232
SinI GGWCC 1 cut(s) 20
Sse9I AATT 2 cut(s) 264, 280
SsiI CCGC 3 cut(s) 81, 245, 331
SspMI CTAG 1 cut(s) 107
SstI GAGCTC 1 cut(s) 379
StyD4I CCNGG 1 cut(s) 144
StyI CCWWGG 2 cut(s) 216, 348
TaaI ACNGT 2 cut(s) 37, 404
TaiI ACGT 2 cut(s) 130, 277
TasI AATT 2 cut(s) 264, 280
TfiI GAWTC 1 cut(s) 55
TscAI CASTG 3 cut(s) 40, 102, 138
TseFI GTSAC 2 cut(s) 151, 352
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 2 cut(s) 151, 352
TspDTI ATGAA 2 cut(s) 17, 164
TspRI CASTG 3 cut(s) 40, 102, 138
VpaK11BI GGWCC 1 cut(s) 20
XapI RAATTY 2 cut(s) 264, 280
XceI RCATGY 3 cut(s) 387, 438, 475
XmnI GAANNNNTTC 1 cut(s) 171
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.