Rh6DG159500

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000400
Physical Location & Seq
Forward (+)
23793077 .. 23796523
3447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG159500.1

Sequence Viewer

Length: 559 bp
ATGGCAGACCTGGTCGTATCCCCAGCTTTGCAAGTGATCTTTGACAGAATAGCATCCCCTGTCATAGAAAAGTTTGCTGACTTGTGGGATTTCAAGGACAACCTCCAGAGGATAAGAGAGACCTTGATGCTGATTCAACCTACTCTCGAGGATGCGGAAGAGCAACAATTCTCCAACAAAGCTGTCAAAATTTGGTTGTCAAAGCTCGAGAAGGCAGCTTATGATGCTGAGGACGGACTGCACTACTTGACTGCTAAAGGTATGATCCCTAGCAGTCGTTATCAACTTGATGATCTTAAGACTGCTTCCCACATTAAAGAGATGCTTCTGGCATTAGAAACAACTGTAAATGAGGGACTTGTTAAGTTTACTTTTACAAGGCCTAATATGGTAGATCGTCGATCTTCCGTGTGGGAGACTAGCTCTTTTGTCATCAAGTCACAGATATATGGAAGAGATGATGACAAAGATAAGGTCGTGAAACTATTGCTGTCTTCTCAAGCTCACCAGGAAGGATATGCATCTTGTATCGCAATAGCTGGTATTGGAGGAATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 map03460
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

186

Amino Acids

20.95

Weight (kDa)

5.26

Isoelectric Point (pI)

47.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 6 - 81 2.2e-18 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000400)

Species Orthologous Gene IDs
malus_domestica MD05G1050700.v1.1 MD05G1050800.v1.1 MD08G1110700.v1.1 MD15G1090000.v1.1 MD15G1090100.v1.1 MD15G1090300.v1.1
prunus_persica Prupe.1G541300_v2.0.a1 Prupe.1G541300_v2.0.a1 Prupe.8G077100_v2.0.a1 Prupe.8G077200_v2.0.a1 Prupe.8G077500_v2.0.a1 Prupe.8G077600_v2.0.a1 Prupe.8G211300_v2.0.a1
pyrus_communis pycom05g04280 pycom08g09220 pycom15g08440
rosa_chinensis RchiOBHm_Chr1g0348461 RchiOBHm_Chr1g0348561 RchiOBHm_Chr6g0269201 RchiOBHm_Chr6g0269411 RchiOBHm_Chr6g0269421 RchiOBHm_Chr6g0269431 RchiOBHm_Chr7g0232901 RchiOBHm_Chr7g0232931 RchiOBHm_Chr7g0232961 RchiOBHm_Chr7g0232971
rosa_laevigata RLG00000001310
rosa_multiflora Rmu_sc0000091.1_g000001 Rmu_sc0000091.1_g000002 Rmu_sc0000091.1_g000008 Rmu_sc0000743.1_g000003 Rmu_sc0000743.1_g000004 Rmu_sc0005353.1_g000002 Rmu_sc0008668.1_g000002 Rmu_sc0015938.1_g000001 Rmu_ssc0000018.1_g000023 Rmu_ssc0000291.1_g000019 Rmu_ssc0000291.1_g000020 Rmu_ssc0000291.1_g000026 Rmu_ssc0000291.1_g000027
rosa_roxburghii Rroxscaffold_3G00227800 Rroxscaffold_3G00227820 Rroxscaffold_4G00306930 Rroxscaffold_4G00306950 Rroxscaffold_7G00198730
rosa_rugosa Rorug01G0194900 Rorug01G0194900 Rorug01G0195000 Rorug01G0195100 Rorug06G0045900 Rorug06G0046100 Rorug06G0047500 Rorug06G0047500 Rorug06G0047600 Rorug06G0047700 Rorug07G0276400 Rorug07G0276600 Rorug07G0276800.1 Rorug07G0276900
rosa_samantha Rh1AG213000 Rh1AG213100 Rh1BG179500 Rh1CG197300 Rh1CG197400 Rh1DG209600 Rh6AG166200 Rh6AG168000 Rh6AG168100 Rh6AG168200 Rh6BG171700 Rh6BG171800 Rh6BG173500 Rh6CG165300 Rh6CG167500 Rh6CG167600 Rh6DG156900 Rh6DG159400 Rh6DG159500 Rh6DG159600 Rh7AG431600 Rh7AG431700 Rh7AG431800 Rh7AG432100 Rh7AG432200 Rh7BG404700 Rh7BG404800 Rh7BG404900 Rh7BG405000 Rh7CG450600 Rh7CG450700 Rh7CG450800 Rh7CG451200 Rh7DG421300
rosa_wichuraiana Rw0G004710 Rw0G010410 Rw1G018020 Rw1G018040 Rw6G014350 Rw6G014450 Rw6G014470 Rw7G035660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 155
AclWI GGATC 1 cut(s) 259
AcsI RAATTY 1 cut(s) 189
AflII CTTAAG 1 cut(s) 296
AgsI TTSAA 2 cut(s) 94, 137
AjnI CCWGG 2 cut(s) 9, 507
AluBI AGCT 7 cut(s) 26, 182, 205, 218, 423, 503, 539
AluI AGCT 7 cut(s) 26, 182, 205, 218, 423, 503, 539
Alw26I GTCTC 2 cut(s) 113, 410
AlwI GGATC 1 cut(s) 259
Ama87I CYCGRG 2 cut(s) 146, 206
AoxI GGCC 1 cut(s) 380
ApeKI GCWGC 1 cut(s) 215
ApoI RAATTY 1 cut(s) 189
ArsI GACNNNNNNTTYG 2 cut(s) 459, 491
AsuHPI GGTGA 1 cut(s) 497
AvaI CYCGRG 2 cut(s) 146, 206
BbsI GAAGAC 1 cut(s) 486
BbvCI CCTCAGC 1 cut(s) 228
BbvI GCAGC 1 cut(s) 227
BciT130I CCWGG 2 cut(s) 11, 509
BciVI GTATCC 1 cut(s) 28
BcoDI GTCTC 2 cut(s) 113, 410
BfaI CTAG 2 cut(s) 270, 420
BfrI CTTAAG 1 cut(s) 296
BfuI GTATCC 1 cut(s) 28
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
Bme1390I CCNGG 2 cut(s) 11, 509
BmeT110I CYCGRG 2 cut(s) 146, 206
BmrFI CCNGG 2 cut(s) 11, 509
BmsI GCATC 6 cut(s) 62, 117, 142, 214, 312, 530
BpiI GAAGAC 1 cut(s) 486
BplI GAGNNNNNCTC 2 cut(s) 407, 439
BpmI CTGGAG 1 cut(s) 89
Bpu10I CCTNAGC 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 483
BsaBI GATNNNNATC 1 cut(s) 520
BsaI GGTCTC 1 cut(s) 113
BsaXI ACNNNNNCTCC 1 cut(s) 540
Bse8I GATNNNNATC 1 cut(s) 520
BseBI CCWGG 2 cut(s) 11, 509
BseGI GGATG 2 cut(s) 53, 157
BseJI GATNNNNATC 1 cut(s) 520
BseMII CTCAG 1 cut(s) 219
BseXI GCAGC 1 cut(s) 227
BseYI CCCAGC 1 cut(s) 22
BsgI GTGCAG 1 cut(s) 224
BshFI GGCC 1 cut(s) 382
BsiHKCI CYCGRG 2 cut(s) 146, 206
BslFI GGGAC 1 cut(s) 369
BsmAI GTCTC 2 cut(s) 113, 410
BsmFI GGGAC 1 cut(s) 369
BsnI GGCC 1 cut(s) 382
Bso31I GGTCTC 1 cut(s) 113
BsoBI CYCGRG 2 cut(s) 146, 206
Bsp143I GATC 5 cut(s) 36, 264, 292, 394, 401
BspACI CCGC 1 cut(s) 155
BspANI GGCC 1 cut(s) 382
BspCNI CTCAG 1 cut(s) 220
BspPI GGATC 1 cut(s) 259
BspQI GCTCTTC 1 cut(s) 153
BspTI CTTAAG 1 cut(s) 296
BspTNI GGTCTC 1 cut(s) 113
BssMI GATC 5 cut(s) 36, 264, 292, 394, 401
Bst2UI CCWGG 2 cut(s) 11, 509
Bst4CI ACNGT 1 cut(s) 346
Bst6I CTCTTC 2 cut(s) 153, 448
BstAFI CTTAAG 1 cut(s) 296
BstDEI CTNAG 1 cut(s) 228
BstF5I GGATG 2 cut(s) 53, 157
BstKTI GATC 5 cut(s) 39, 267, 295, 397, 404
BstMAI GTCTC 2 cut(s) 113, 410
BstMBI GATC 5 cut(s) 36, 264, 292, 394, 401
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstNI CCWGG 2 cut(s) 11, 509
BstSCI CCNGG 2 cut(s) 9, 507
BstV1I GCAGC 1 cut(s) 227
BstV2I GAAGAC 1 cut(s) 486
BsuI GTATCC 1 cut(s) 28
BsuRI GGCC 1 cut(s) 382
BtsCI GGATG 2 cut(s) 53, 157
CsiI ACCWGGT 1 cut(s) 9
CviJI RGCY 8 cut(s) 26, 182, 205, 218, 382, 423, 503, 539
CviKI_1 RGCY 8 cut(s) 26, 182, 205, 218, 382, 423, 503, 539
DdeI CTNAG 1 cut(s) 228
DpnI GATC 5 cut(s) 38, 266, 294, 396, 403
DpnII GATC 5 cut(s) 36, 264, 292, 394, 401
Eam1104I CTCTTC 2 cut(s) 153, 448
EarI CTCTTC 2 cut(s) 153, 448
Eco147I AGGCCT 1 cut(s) 382
Eco31I GGTCTC 1 cut(s) 113
Eco88I CYCGRG 2 cut(s) 146, 206
EcoRII CCWGG 2 cut(s) 9, 507
EcoT22I ATGCAT 1 cut(s) 523
FaiI YATR 7 cut(s) 65, 222, 263, 389, 448, 450, 519
FalI AAGNNNNNCTT 2 cut(s) 309, 341
FaqI GGGAC 1 cut(s) 369
Fnu4HI GCNGC 1 cut(s) 216
FokI GGATG 2 cut(s) 40, 164
Fsp4HI GCNGC 1 cut(s) 216
FspBI CTAG 2 cut(s) 270, 420
GluI GCNGC 1 cut(s) 216
GsaI CCCAGC 1 cut(s) 26
GsuI CTGGAG 1 cut(s) 89
HaeIII GGCC 1 cut(s) 382
HinfI GANTC 1 cut(s) 133
HphI GGTGA 1 cut(s) 497
Hpy166II GTNNAC 1 cut(s) 369
Hpy188III TCNNGA 4 cut(s) 106, 146, 208, 478
Hpy8I GTNNAC 1 cut(s) 369
Hpy99I CGWCG 1 cut(s) 402
HpyAV CCTTC 2 cut(s) 205, 506
HpyCH4III ACNGT 1 cut(s) 346
HpyCH4V TGCA 3 cut(s) 31, 241, 521
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 1 cut(s) 228
Kzo9I GATC 5 cut(s) 36, 264, 292, 394, 401
LguI GCTCTTC 1 cut(s) 153
LpnPI CCDG 8 cut(s) 23, 36, 72, 119, 314, 494, 521, 525
Lsp1109I GCAGC 1 cut(s) 227
LweI GCATC 6 cut(s) 62, 117, 142, 214, 312, 530
MabI ACCWGGT 1 cut(s) 9
MaeI CTAG 2 cut(s) 270, 420
MaeIII GTNAC 1 cut(s) 438
MalI GATC 5 cut(s) 38, 266, 294, 396, 403
MboI GATC 5 cut(s) 36, 264, 292, 394, 401
MboII GAAGA 4 cut(s) 170, 396, 465, 486
MluCI AATT 3 cut(s) 167, 189, 552
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 6 cut(s) 102, 113, 142, 223, 346, 542
Mph1103I ATGCAT 1 cut(s) 523
MseI TTAA 3 cut(s) 297, 315, 363
MspCI CTTAAG 1 cut(s) 296
MspR9I CCNGG 2 cut(s) 11, 509
MvaI CCWGG 2 cut(s) 11, 509
MwoI GCNNNNNNNGC 1 cut(s) 224
NdeII GATC 5 cut(s) 36, 264, 292, 394, 401
NmuCI GTSAC 1 cut(s) 438
NsiI ATGCAT 1 cut(s) 523
PaeR7I CTCGAG 2 cut(s) 146, 206
PceI AGGCCT 1 cut(s) 382
PciSI GCTCTTC 1 cut(s) 153
PfeI GAWTC 1 cut(s) 133
PflFI GACNNNGTC 1 cut(s) 11
PkrI GCNGC 1 cut(s) 217
Psp6I CCWGG 2 cut(s) 9, 507
PspFI CCCAGC 1 cut(s) 22
PspGI CCWGG 2 cut(s) 9, 507
PsyI GACNNNGTC 1 cut(s) 11
SapI GCTCTTC 1 cut(s) 153
SaqAI TTAA 3 cut(s) 297, 315, 363
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 5 cut(s) 36, 264, 292, 394, 401
ScrFI CCNGG 2 cut(s) 11, 509
SexAI ACCWGGT 1 cut(s) 9
SfaNI GCATC 6 cut(s) 62, 117, 142, 214, 312, 530
Sfr274I CTCGAG 2 cut(s) 146, 206
SlaI CTCGAG 2 cut(s) 146, 206
SmlI CTYRAG 4 cut(s) 146, 206, 296, 498
SmoI CTYRAG 4 cut(s) 146, 206, 296, 498
Sse9I AATT 3 cut(s) 167, 189, 552
SseBI AGGCCT 1 cut(s) 382
SsiI CCGC 1 cut(s) 155
SspMI CTAG 2 cut(s) 270, 420
StuI AGGCCT 1 cut(s) 382
StyD4I CCNGG 2 cut(s) 9, 507
TaaI ACNGT 1 cut(s) 346
TaqI TCGA 3 cut(s) 147, 207, 400
TasI AATT 3 cut(s) 167, 189, 552
TfiI GAWTC 1 cut(s) 133
Tru1I TTAA 3 cut(s) 297, 315, 363
Tru9I TTAA 3 cut(s) 297, 315, 363
TseFI GTSAC 1 cut(s) 438
TseI GCWGC 1 cut(s) 215
Tsp45I GTSAC 1 cut(s) 438
TspGWI ACGGA 2 cut(s) 249, 397
Tth111I GACNNNGTC 1 cut(s) 11
Vha464I CTTAAG 1 cut(s) 296
XapI RAATTY 1 cut(s) 189
XhoI CTCGAG 2 cut(s) 146, 206
XspI CTAG 2 cut(s) 270, 420
Zsp2I ATGCAT 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.