RLG00000001310

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
13915909 .. 13916301
393 bp
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UTR
Exon/CDS
Intron
RLM00000001310

Sequence Viewer

Length: 393 bp
ATGGAGTCTTTGATTGTATCTCCGATGGTAGAGGTGCTCTTTGGAAGGTTGGCTAACACTGTTGTTGGTGAAGTGCGAACTCGCAGAGAGTTCAAGAGGGAGATCGAGAAGATGCGGGAGACGTTACCGGTGATTCAAGCGGTGATAGAGGATGCACAGGAGCAGCAGAGGAAAAATAAGAAGGTGAGGACTTGGCTGGCAAAGCTCAAAGACGTAGCAGTAGATGCTGATGATCTGCTTGATGAGGTTGCCACCTTAGTTCTGCGCAAGCATTTGATGAAAACGGAATTTTATCGGTCATATAGGGGCAGCCTCCATCTCCCACTCGATCTCCCACTACAGATTCTTCAAACTGAGGGTAGCATAACTTTCACCTCCCACTCCATCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

131

Amino Acids

15.0

Weight (kDa)

8.03

Isoelectric Point (pI)

51.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 4 - 99 6e-06 Arabidopsis broad-spectrum mildew resistance protein RPW8
Rx_N PF18052 10 - 92 2.4e-23 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000400)

Species Orthologous Gene IDs
malus_domestica MD05G1050700.v1.1 MD05G1050800.v1.1 MD08G1110700.v1.1 MD15G1090000.v1.1 MD15G1090100.v1.1 MD15G1090300.v1.1
prunus_persica Prupe.1G541300_v2.0.a1 Prupe.1G541300_v2.0.a1 Prupe.8G077100_v2.0.a1 Prupe.8G077200_v2.0.a1 Prupe.8G077500_v2.0.a1 Prupe.8G077600_v2.0.a1 Prupe.8G211300_v2.0.a1
pyrus_communis pycom05g04280 pycom08g09220 pycom15g08440
rosa_chinensis RchiOBHm_Chr1g0348461 RchiOBHm_Chr1g0348561 RchiOBHm_Chr6g0269201 RchiOBHm_Chr6g0269411 RchiOBHm_Chr6g0269421 RchiOBHm_Chr6g0269431 RchiOBHm_Chr7g0232901 RchiOBHm_Chr7g0232931 RchiOBHm_Chr7g0232961 RchiOBHm_Chr7g0232971
rosa_laevigata RLG00000001310
rosa_multiflora Rmu_sc0000091.1_g000001 Rmu_sc0000091.1_g000002 Rmu_sc0000091.1_g000008 Rmu_sc0000743.1_g000003 Rmu_sc0000743.1_g000004 Rmu_sc0005353.1_g000002 Rmu_sc0008668.1_g000002 Rmu_sc0015938.1_g000001 Rmu_ssc0000018.1_g000023 Rmu_ssc0000291.1_g000019 Rmu_ssc0000291.1_g000020 Rmu_ssc0000291.1_g000026 Rmu_ssc0000291.1_g000027
rosa_roxburghii Rroxscaffold_3G00227800 Rroxscaffold_3G00227820 Rroxscaffold_4G00306930 Rroxscaffold_4G00306950 Rroxscaffold_7G00198730
rosa_rugosa Rorug01G0194900 Rorug01G0194900 Rorug01G0195000 Rorug01G0195100 Rorug06G0045900 Rorug06G0046100 Rorug06G0047500 Rorug06G0047500 Rorug06G0047600 Rorug06G0047700 Rorug07G0276400 Rorug07G0276600 Rorug07G0276800.1 Rorug07G0276900
rosa_samantha Rh1AG213000 Rh1AG213100 Rh1BG179500 Rh1CG197300 Rh1CG197400 Rh1DG209600 Rh6AG166200 Rh6AG168000 Rh6AG168100 Rh6AG168200 Rh6BG171700 Rh6BG171800 Rh6BG173500 Rh6CG165300 Rh6CG167500 Rh6CG167600 Rh6DG156900 Rh6DG159400 Rh6DG159500 Rh6DG159600 Rh7AG431600 Rh7AG431700 Rh7AG431800 Rh7AG432100 Rh7AG432200 Rh7BG404700 Rh7BG404800 Rh7BG404900 Rh7BG405000 Rh7CG450600 Rh7CG450700 Rh7CG450800 Rh7CG451200 Rh7DG421300
rosa_wichuraiana Rw0G004710 Rw0G010410 Rw1G018020 Rw1G018040 Rw6G014350 Rw6G014450 Rw6G014470 Rw7G035660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 266
AciI CCGC 2 cut(s) 115, 140
AcsI RAATTY 1 cut(s) 287
AgeI ACCGGT 1 cut(s) 127
AgsI TTSAA 3 cut(s) 94, 137, 350
AluBI AGCT 1 cut(s) 205
AluI AGCT 1 cut(s) 205
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 1 cut(s) 113
ApeKI GCWGC 2 cut(s) 163, 309
ApoI RAATTY 1 cut(s) 287
AsiGI ACCGGT 1 cut(s) 127
AspLEI GCGC 1 cut(s) 267
AsuHPI GGTGA 5 cut(s) 80, 142, 154, 196, 364
Bbv12I GWGCWC 1 cut(s) 39
BbvI GCAGC 2 cut(s) 175, 321
BccI CCATC 3 cut(s) 19, 324, 392
BcoDI GTCTC 1 cut(s) 113
BfmI CTRYAG 1 cut(s) 338
BisI GCNGC 2 cut(s) 164, 310
BlsI GCNGC 2 cut(s) 165, 311
BmsI GCATC 3 cut(s) 102, 142, 214
BsaWI WCCGGW 1 cut(s) 127
BsaXI ACNNNNNCTCC 3 cut(s) 315, 345, 371
Bse118I RCCGGY 1 cut(s) 127
BseGI GGATG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 345
BseXI GCAGC 2 cut(s) 175, 321
BshTI ACCGGT 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 39
BsiSI CCGG 1 cut(s) 128
BsmAI GTCTC 1 cut(s) 113
BsmBI CGTCTC 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 3 cut(s) 102, 232, 328
BspACI CCGC 2 cut(s) 115, 140
BspCNI CTCAG 1 cut(s) 346
BsrFI RCCGGY 1 cut(s) 127
BssAI RCCGGY 1 cut(s) 127
BssMI GATC 3 cut(s) 102, 232, 328
Bst4CI ACNGT 1 cut(s) 61
BstAPI GCANNNNNTGC 1 cut(s) 224
BstC8I GCNNGC 2 cut(s) 198, 269
BstDEI CTNAG 2 cut(s) 256, 354
BstF5I GGATG 1 cut(s) 157
BstHHI GCGC 1 cut(s) 267
BstKTI GATC 3 cut(s) 105, 235, 331
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 3 cut(s) 102, 232, 328
BstMWI GCNNNNNNNGC 2 cut(s) 202, 224
BstSFI CTRYAG 1 cut(s) 338
BstV1I GCAGC 2 cut(s) 175, 321
BtsCI GGATG 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 2 cut(s) 198, 269
CfoI GCGC 1 cut(s) 267
Cfr10I RCCGGY 1 cut(s) 127
CspAI ACCGGT 1 cut(s) 127
CviJI RGCY 4 cut(s) 53, 196, 205, 312
CviKI_1 RGCY 4 cut(s) 53, 196, 205, 312
DdeI CTNAG 2 cut(s) 256, 354
DpnI GATC 3 cut(s) 104, 234, 330
DpnII GATC 3 cut(s) 102, 232, 328
Esp3I CGTCTC 1 cut(s) 113
FaiI YATR 3 cut(s) 301, 303, 365
FauI CCCGC 1 cut(s) 108
Fnu4HI GCNGC 2 cut(s) 164, 310
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 2 cut(s) 164, 310
FspI TGCGCA 1 cut(s) 266
GlaI GCGC 1 cut(s) 266
GluI GCNGC 2 cut(s) 164, 310
HapII CCGG 1 cut(s) 128
HhaI GCGC 1 cut(s) 267
Hin6I GCGC 1 cut(s) 265
HinP1I GCGC 1 cut(s) 265
HinfI GANTC 3 cut(s) 5, 133, 343
HpaII CCGG 1 cut(s) 128
HphI GGTGA 5 cut(s) 80, 142, 154, 196, 364
Hpy188I TCNGA 1 cut(s) 24
Hpy188III TCNNGA 2 cut(s) 94, 106
HpyAV CCTTC 2 cut(s) 39, 175
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4IV ACGT 2 cut(s) 122, 213
HpyCH4V TGCA 1 cut(s) 155
HpyF10VI GCNNNNNNNGC 2 cut(s) 202, 224
HpyF3I CTNAG 2 cut(s) 256, 354
HpySE526I ACGT 2 cut(s) 122, 213
HspAI GCGC 1 cut(s) 265
Kzo9I GATC 3 cut(s) 102, 232, 328
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 3 cut(s) 141, 143, 182
Lsp1109I GCAGC 2 cut(s) 175, 321
LweI GCATC 3 cut(s) 102, 142, 214
MaeII ACGT 2 cut(s) 122, 213
MaeIII GTNAC 1 cut(s) 123
MalI GATC 3 cut(s) 104, 234, 330
MboI GATC 3 cut(s) 102, 232, 328
MboII GAAGA 2 cut(s) 121, 338
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 1 cut(s) 287
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 9 cut(s) 25, 90, 142, 162, 180, 238, 323, 349, 385
MspI CCGG 1 cut(s) 128
MwoI GCNNNNNNNGC 2 cut(s) 202, 224
NdeII GATC 3 cut(s) 102, 232, 328
NsbI TGCGCA 1 cut(s) 266
PfeI GAWTC 2 cut(s) 133, 343
PinAI ACCGGT 1 cut(s) 127
PkrI GCNGC 2 cut(s) 165, 311
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
SatI GCNGC 2 cut(s) 164, 310
Sau3AI GATC 3 cut(s) 102, 232, 328
SchI GAGTC 1 cut(s) 14
SduI GDGCHC 1 cut(s) 39
SetI ASST 9 cut(s) 36, 50, 125, 186, 207, 216, 249, 257, 377
SfaNI GCATC 3 cut(s) 102, 142, 214
SfcI CTRYAG 1 cut(s) 338
Sse9I AATT 1 cut(s) 287
SsiI CCGC 2 cut(s) 115, 140
TaaI ACNGT 1 cut(s) 61
TaiI ACGT 2 cut(s) 125, 216
TaqI TCGA 2 cut(s) 105, 327
TaqII GACCGA 1 cut(s) 285
TasI AATT 1 cut(s) 287
TfiI GAWTC 2 cut(s) 133, 343
TscAI CASTG 1 cut(s) 64
TseI GCWGC 2 cut(s) 163, 309
TspDTI ATGAA 1 cut(s) 293
TspGWI ACGGA 1 cut(s) 299
TspRI CASTG 1 cut(s) 64
XapI RAATTY 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.