Rh1AG213100

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
40740093 .. 40743635
3543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG213100.1

Sequence Viewer

Length: 2508 bp
ATGGCAGACGTAGTTTTATCACCTGCTTTGCAAGTGATCTTTGACAGAGTAGCATCCCCAGTCCTACAAAAGCTTGCTGATATCTGGGACATGAAGGACAACCTCCAGAGCCTACAACATGCCTTGGTCATGGTTCAAGCTATTCTCGAAGATGCAGAGGAGCAACAACTGACCAACAAAGCCGTCCGGCTTTGGCTGTTGAAGCTCAAGAACGCAGCTCATGATGCTGATGACCTTCTGGATTTCGTTACGGCCAAAGGAAAAGATAAGTGGACTTTAGCAATTTCAAAATCCATAGATGCTGACAAAGTCAGAAAGATGCTTTTGACATTAGAAATGACAGAAGTAGAGTTACGTGATGGTGGTAGCACAATTGGATACAAAATGAATGATGTCATTCATGATCTTGCACGATATGTTTCTGGAAATGAATCCGTTATGCTTGAACAAGGTCTTCCACCAAGTAATCCAGCACAAATTCGCCGCTCATCCATTATTTATAAATACAGGGAAGTTACAATTCCAGAAGCTCTCTTTGAAGCAGAACATTTACGAACTGTCTTATTGATTGGAGAATATGGACTTCTAAAAGACAGTAGTAAAATGTTATTTAATTGTATATACCTGCGTGTGCTGGACTTGAACAACTGTGAAGTTCATTTTTTGCCGTCATCAATAGGTGGGTTGATATGTTTGAGGTATCTCGACTTGTCTTATACGCCTATCTCCAAGTTGCCGGCAACCACAAGGAATCTCTGTTCATTGCAGACTTTAAACCTCTCTGGATGTCATAATCTTAGAGTCTTGCGAGACTTCGAAGCAATGACCAGCCTAAGACATCTCAATATAACTGGATGTGATAGCTTGTGGTATATATCTCCTTGTATTAAAATGTTACTTCAACTTCAGACACTGCCATTATATTTCGTTCGCAAGAATCCCGGTAATCTTGGTGCACTAGAGAATTTGAATCTTTATGGGGAGTTGAATATTACACACTTGGAGAATATAAGAAATGCAACTGGAGCTCAATCATCTGGACTGAAGATGAAAGAAAATATTGAGTCGTTGGGATTATACTGGGGAGATTTTGGAGATGTGCACGATAGGAATAAATCACTATTGAAGAAACCAGCCAGGTCCTCAGCCAAGTCCTCAGCCAAATGGTACTGTTCAGAAGTAGGGATGCGGTGGCATGAACCTAATGCTGAAGAGGCGGTAGAAATTCTTGATGGCCTGAAACCACACAAGAATTTGAAAAAGCTAGTTATACATGGTTATCCAGGAATCAGATTTCCAGATTGGAAACTGCCAAATCTAATTGCAGTTGATTTGTCCAATTGTAAGAACTGTGAATATCTTCCAGCCCTTGGGAATCTTCTTCTACTCAAGACTCTTTCTCTGCGTGGAATGGAGAGCGTGACGCGCATTGGCTTTGAGTTCCATGGTGATAGTACAGATATTTGCTTTTCATCACTTGAAGAATTATCGCTCAGTGATTTTCCGAAATTGGAAACCTGGTCGAGTGCAAATAATGAAAATGCATTTCCGAGCTTGAGGAAGTTAACCATACGTAGGTGTCCCAAGTTGACACAGATACCATTTTGTTTGTCTCTTCAACATTTGGAGCTGCGGGATTGTAATCCATCTTCAATCTTCATTGGAGGTTTAACTTTGCTGACAGTGCTTGTAATAGAAAAACTTCCACAGCTGCGCACTCTACCACAAGGGCTTTCTGCATCAGTTAGTCTGTCTTCTCTGGAGGTCTTATCTTGCCCCAAGCTTTGTTCACTGCCTTCGGAGATGGGAAACCTCACTGCACTGAAATCATTGACCATTCGTTGGTGTGATGAGTTGTCCTCTCTGCCACAGAGTTTGCAGAACCTCAAAGCTCTGGAATCACTAGAGATTAGTGACTGTCATAGTATAATCTCGATGCCAGATGGTGCAATTGGAGGTTTGAGTTCCCTTCAAACTTTGTCCATTGAGAACTGCAGTAGTCTGAGTTCTTTGTCTTCGAGTCTGGAACAACTCGCTTTCCTTGAGCGGTTCACCATTATGTACTGTCCAAACCTTGGTTCTTTCCCAGAGGGTGTGCAACACCTCTCAACCCTTCGAACTTTGTCTATCTTGAGCTGTCCTTGGTTTGATTCTTTGCCAGAAGGGTTGCAAATGGTCAAGACGTTGCAGTGTCTGGAAATTGGTAGCTGCCCGAATTTCACAGCTTTGCCAGAGTGGGTTGAGAAGCTTGCTTCACTCAGATCTTTGACCATTTTTGATTGTCCTAATTTGAAACTGTTGCCTCAAAGTCTAGAACTTCTCACTAAACTCCAGCACCTCTCGATTCAAGAATGTCCCGAGCTTGAGGAAAGATGTAGACAAGGCAGTGGTGAGGATTGGCTGAAAATAGCTCATGTTCCACATAAGTACATTGGATCGCCGGAGATGAGGCGGTCCAGTAGTGAAGCAAGTACATCGGGCAGCTCTTCTGTTGAAGCATCTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

835

Amino Acids

93.03

Weight (kDa)

5.94

Isoelectric Point (pI)

55.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 5 - 86 7.6e-17 Rx N-terminal domain
LRR_14 PF23598 203 - 542 7.5e-18 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 318 - 471 2.2e-26 R13L1/DRL21 LRRs
LRR_14 PF23598 539 - 679 1.6e-08 Leucine-rich repeat region
LRR_14 PF23598 691 - 785 3.8e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000400)

Species Orthologous Gene IDs
malus_domestica MD05G1050700.v1.1 MD05G1050800.v1.1 MD08G1110700.v1.1 MD15G1090000.v1.1 MD15G1090100.v1.1 MD15G1090300.v1.1
prunus_persica Prupe.1G541300_v2.0.a1 Prupe.1G541300_v2.0.a1 Prupe.8G077100_v2.0.a1 Prupe.8G077200_v2.0.a1 Prupe.8G077500_v2.0.a1 Prupe.8G077600_v2.0.a1 Prupe.8G211300_v2.0.a1
pyrus_communis pycom05g04280 pycom08g09220 pycom15g08440
rosa_chinensis RchiOBHm_Chr1g0348461 RchiOBHm_Chr1g0348561 RchiOBHm_Chr6g0269201 RchiOBHm_Chr6g0269411 RchiOBHm_Chr6g0269421 RchiOBHm_Chr6g0269431 RchiOBHm_Chr7g0232901 RchiOBHm_Chr7g0232931 RchiOBHm_Chr7g0232961 RchiOBHm_Chr7g0232971
rosa_laevigata RLG00000001310
rosa_multiflora Rmu_sc0000091.1_g000001 Rmu_sc0000091.1_g000002 Rmu_sc0000091.1_g000008 Rmu_sc0000743.1_g000003 Rmu_sc0000743.1_g000004 Rmu_sc0005353.1_g000002 Rmu_sc0008668.1_g000002 Rmu_sc0015938.1_g000001 Rmu_ssc0000018.1_g000023 Rmu_ssc0000291.1_g000019 Rmu_ssc0000291.1_g000020 Rmu_ssc0000291.1_g000026 Rmu_ssc0000291.1_g000027
rosa_roxburghii Rroxscaffold_3G00227800 Rroxscaffold_3G00227820 Rroxscaffold_4G00306930 Rroxscaffold_4G00306950 Rroxscaffold_7G00198730
rosa_rugosa Rorug01G0194900 Rorug01G0194900 Rorug01G0195000 Rorug01G0195100 Rorug06G0045900 Rorug06G0046100 Rorug06G0047500 Rorug06G0047500 Rorug06G0047600 Rorug06G0047700 Rorug07G0276400 Rorug07G0276600 Rorug07G0276800.1 Rorug07G0276900
rosa_samantha Rh1AG213000 Rh1AG213100 Rh1BG179500 Rh1CG197300 Rh1CG197400 Rh1DG209600 Rh6AG166200 Rh6AG168000 Rh6AG168100 Rh6AG168200 Rh6BG171700 Rh6BG171800 Rh6BG173500 Rh6CG165300 Rh6CG167500 Rh6CG167600 Rh6DG156900 Rh6DG159400 Rh6DG159500 Rh6DG159600 Rh7AG431600 Rh7AG431700 Rh7AG431800 Rh7AG432100 Rh7AG432200 Rh7BG404700 Rh7BG404800 Rh7BG404900 Rh7BG405000 Rh7CG450600 Rh7CG450700 Rh7CG450800 Rh7CG451200 Rh7DG421300
rosa_wichuraiana Rw0G004710 Rw0G010410 Rw1G018020 Rw1G018040 Rw6G014350 Rw6G014450 Rw6G014470 Rw7G035660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 501
AarI CACCTGC 1 cut(s) 31
Acc16I TGCGCA 1 cut(s) 1715
Acc36I ACCTGC 2 cut(s) 31, 633
AccB7I CCANNNNNTGG 3 cut(s) 1370, 1842, 2075
AccBSI CCGCTC 2 cut(s) 486, 2047
AccI GTMKAC 1 cut(s) 2377
AccII CGCG 1 cut(s) 1426
AciI CCGC 6 cut(s) 484, 1189, 1217, 1633, 2047, 2452
AclWI GGATC 1 cut(s) 2443
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 5 cut(s) 477, 964, 1224, 1252, 2215
AcuI CTGAAG 3 cut(s) 890, 1064, 1230
AfaI GTAC 5 cut(s) 1169, 1456, 2063, 2429, 2473
AfiI CCNNNNNNNGG 4 cut(s) 1370, 1575, 1842, 2075
AjnI CCWGG 3 cut(s) 1136, 1282, 1517
AjuI GAANNNNNNNTTGG 2 cut(s) 2062, 2094
AloI GAACNNNNNNTCC 2 cut(s) 742, 774
Alw21I GWGCWC 3 cut(s) 958, 1030, 1104
Alw26I GTCTC 2 cut(s) 804, 1617
Alw44I GTGCAC 2 cut(s) 954, 1100
AlwI GGATC 1 cut(s) 2443
AlwNI CAGNNNCTG 2 cut(s) 913, 2194
Ama87I CYCGRG 1 cut(s) 2357
AoxI GGCC 2 cut(s) 252, 1234
ApaLI GTGCAC 2 cut(s) 954, 1100
ApeKI GCWGC 5 cut(s) 215, 1630, 1711, 2208, 2481
ApoI RAATTY 5 cut(s) 477, 964, 1224, 1252, 2215
Asp700I GAANNNNTTC 2 cut(s) 1359, 1701
AspLEI GCGC 2 cut(s) 1428, 1716
AspS9I GGNCC 2 cut(s) 1140, 2454
AsuC2I CCSGG 1 cut(s) 942
AsuHPI GGTGA 4 cut(s) 12, 1460, 2044, 2402
AsuII TTCGAA 2 cut(s) 816, 2116
AvaI CYCGRG 1 cut(s) 2357
AvaII GGWCC 2 cut(s) 1140, 2454
BaeGI GKGCMC 2 cut(s) 958, 1104
BanII GRGCYC 1 cut(s) 1030
BarI GAAGNNNNNNTAC 4 cut(s) 336, 368, 1633, 1665
BbsI GAAGAC 3 cut(s) 446, 1746, 2007
Bbv12I GWGCWC 3 cut(s) 958, 1030, 1104
BbvCI CCTCAGC 2 cut(s) 1144, 1156
BbvI GCAGC 5 cut(s) 227, 1617, 1698, 2195, 2493
BccI CCATC 5 cut(s) 353, 1226, 1654, 1798, 1937
BceAI ACGGC 3 cut(s) 167, 267, 652
BcgI CGANNNNNNTGC 2 cut(s) 2457, 2491
BciT130I CCWGG 3 cut(s) 1138, 1284, 1519
BciVI GTATCC 1 cut(s) 371
BcnI CCSGG 1 cut(s) 942
BcoDI GTCTC 2 cut(s) 804, 1617
BfaI CTAG 4 cut(s) 959, 1265, 1904, 2312
BfmI CTRYAG 1 cut(s) 1993
BfuAI ACCTGC 2 cut(s) 31, 633
BfuI GTATCC 1 cut(s) 371
BglII AGATCT 1 cut(s) 2261
BisI GCNGC 6 cut(s) 216, 484, 1631, 1712, 2209, 2482
BlsI GCNGC 6 cut(s) 217, 485, 1632, 1713, 2210, 2483
Bme1390I CCNGG 4 cut(s) 942, 1138, 1284, 1519
Bme18I GGWCC 2 cut(s) 1140, 2454
BmeT110I CYCGRG 1 cut(s) 2357
BmgT120I GGNCC 2 cut(s) 1140, 2454
BmrFI CCNGG 4 cut(s) 942, 1138, 1284, 1519
BmrI ACTGGG 2 cut(s) 53, 1090
BmsI GCATC 8 cut(s) 62, 142, 214, 289, 309, 1176, 1748, 1926
BmuI ACTGGG 2 cut(s) 53, 1090
BpiI GAAGAC 3 cut(s) 446, 1746, 2007
BplI GAGNNNNNCTC 2 cut(s) 1844, 1876
BpmI CTGGAG 4 cut(s) 89, 1044, 1781, 2315
Bpu10I CCTNAGC 2 cut(s) 1144, 1156
Bpu14I TTCGAA 2 cut(s) 816, 2116
BpuEI CTTGAG 6 cut(s) 191, 1373, 1576, 2063, 2152, 2384
BpuMI CCSGG 1 cut(s) 942
BsaAI YACGTR 2 cut(s) 356, 1574
BsaBI GATNNNNATC 1 cut(s) 1641
BsaJI CCNNGG 5 cut(s) 123, 1369, 1444, 2074, 2141
Bsc4I CCNNNNNNNGG 4 cut(s) 1370, 1575, 1842, 2075
Bse118I RCCGGY 1 cut(s) 736
Bse1I ACTGG 5 cut(s) 59, 856, 1027, 1085, 2457
Bse3DI GCAATG 2 cut(s) 761, 828
Bse8I GATNNNNATC 1 cut(s) 1641
BseBI CCWGG 3 cut(s) 1138, 1284, 1519
BseDI CCNNGG 5 cut(s) 123, 1369, 1444, 2074, 2141
BseGI GGATG 5 cut(s) 53, 488, 791, 860, 1191
BseJI GATNNNNATC 1 cut(s) 1641
BseLI CCNNNNNNNGG 4 cut(s) 1370, 1575, 1842, 2075
BseMI GCAATG 2 cut(s) 761, 828
BseMII CTCAG 5 cut(s) 1158, 1170, 1507, 1994, 2272
BseNI ACTGG 5 cut(s) 59, 856, 1027, 1085, 2457
BseRI GAGGAG 1 cut(s) 173
BseSI GKGCMC 2 cut(s) 958, 1104
BseXI GCAGC 5 cut(s) 227, 1617, 1698, 2195, 2493
BsgI GTGCAG 1 cut(s) 1803
Bsh1236I CGCG 1 cut(s) 1426
BshFI GGCC 2 cut(s) 254, 1236
BsiHKAI GWGCWC 3 cut(s) 958, 1030, 1104
BsiHKCI CYCGRG 1 cut(s) 2357
BsiSI CCGG 4 cut(s) 187, 737, 942, 2441
BslFI GGGAC 3 cut(s) 101, 1566, 2340
BslI CCNNNNNNNGG 4 cut(s) 1370, 1575, 1842, 2075
BsmAI GTCTC 2 cut(s) 804, 1617
BsmFI GGGAC 3 cut(s) 101, 1566, 2340
BsnI GGCC 2 cut(s) 254, 1236
BsoBI CYCGRG 1 cut(s) 2357
Bsp119I TTCGAA 2 cut(s) 816, 2116
Bsp1286I GDGCHC 3 cut(s) 958, 1030, 1104
Bsp143I GATC 4 cut(s) 36, 403, 2261, 2435
Bsp19I CCATGG 1 cut(s) 1444
BspACI CCGC 6 cut(s) 484, 1189, 1217, 1633, 2047, 2452
BspANI GGCC 2 cut(s) 254, 1236
BspCNI CTCAG 5 cut(s) 1157, 1169, 1506, 1995, 2271
BspFNI CGCG 1 cut(s) 1426
BspHI TCATGA 2 cut(s) 220, 400
BspMAI CTGCAG 1 cut(s) 1997
BspMI ACCTGC 2 cut(s) 31, 633
BspPI GGATC 1 cut(s) 2443
BspQI GCTCTTC 1 cut(s) 2491
BspT104I TTCGAA 2 cut(s) 816, 2116
BsrBI CCGCTC 2 cut(s) 486, 2047
BsrDI GCAATG 2 cut(s) 761, 828
BsrFI RCCGGY 1 cut(s) 736
BsrI ACTGG 5 cut(s) 59, 856, 1027, 1085, 2457
BssAI RCCGGY 1 cut(s) 736
BssECI CCNNGG 5 cut(s) 123, 1369, 1444, 2074, 2141
BssMI GATC 4 cut(s) 36, 403, 2261, 2435
BssT1I CCWWGG 5 cut(s) 123, 1369, 1444, 2074, 2141
Bst2UI CCWGG 3 cut(s) 1138, 1284, 1519
Bst4CI ACNGT 9 cut(s) 559, 596, 650, 1172, 1352, 1684, 1919, 2066, 2298
Bst6I CTCTTC 3 cut(s) 1206, 1620, 2491
BstBAI YACGTR 2 cut(s) 356, 1574
BstBI TTCGAA 2 cut(s) 816, 2116
BstC8I GCNNGC 3 cut(s) 75, 738, 2250
BstDEI CTNAG 7 cut(s) 797, 833, 1144, 1156, 1493, 2003, 2258
BstDSI CCRYGG 1 cut(s) 1444
BstF5I GGATG 5 cut(s) 53, 488, 791, 860, 1191
BstFNI CGCG 1 cut(s) 1426
BstHHI GCGC 2 cut(s) 1428, 1716
BstKTI GATC 4 cut(s) 39, 406, 2264, 2438
BstMAI GTCTC 2 cut(s) 804, 1617
BstMBI GATC 4 cut(s) 36, 403, 2261, 2435
BstMWI GCNNNNNNNGC 6 cut(s) 202, 224, 1025, 1214, 1425, 1684
BstNI CCWGG 3 cut(s) 1138, 1284, 1519
BstNSI RCATGY 1 cut(s) 122
BstSCI CCNGG 4 cut(s) 940, 1136, 1282, 1517
BstSFI CTRYAG 1 cut(s) 1993
BstSLI GKGCMC 2 cut(s) 958, 1104
BstSNI TACGTA 1 cut(s) 1574
BstUI CGCG 1 cut(s) 1426
BstV1I GCAGC 5 cut(s) 227, 1617, 1698, 2195, 2493
BstV2I GAAGAC 3 cut(s) 446, 1746, 2007
BstX2I RGATCY 1 cut(s) 2261
BstYI RGATCY 1 cut(s) 2261
BsuI GTATCC 1 cut(s) 371
BsuRI GGCC 2 cut(s) 254, 1236
BtgI CCRYGG 1 cut(s) 1444
BtsCI GGATG 5 cut(s) 53, 488, 791, 860, 1191
BtsI GCAGTG 5 cut(s) 911, 1790, 1815, 2195, 2392
BtsIMutI CAGTG 8 cut(s) 911, 1501, 1689, 1790, 1815, 1820, 2195, 2392
BveI ACCTGC 2 cut(s) 31, 633
Cac8I GCNNGC 3 cut(s) 75, 738, 2250
CaiI CAGNNNCTG 2 cut(s) 913, 2194
CciI TCATGA 2 cut(s) 220, 400
CfoI GCGC 2 cut(s) 1428, 1716
Cfr10I RCCGGY 1 cut(s) 736
Cfr13I GGNCC 2 cut(s) 1140, 2454
CseI GACGC 1 cut(s) 1432
CsiI ACCWGGT 1 cut(s) 1517
Csp6I GTAC 5 cut(s) 1168, 1455, 2062, 2428, 2472
CspCI CAANNNNNGTGG 2 cut(s) 1857, 1892
CviAII CATG 9 cut(s) 91, 119, 130, 221, 401, 1196, 1274, 1445, 2414
CviQI GTAC 5 cut(s) 1168, 1455, 2062, 2428, 2472
DdeI CTNAG 7 cut(s) 797, 833, 1144, 1156, 1493, 2003, 2258
DpnI GATC 4 cut(s) 38, 405, 2263, 2437
DpnII GATC 4 cut(s) 36, 403, 2261, 2435
DraI TTTAAA 1 cut(s) 774
EaeI YGGCCR 1 cut(s) 252
Eam1104I CTCTTC 3 cut(s) 1206, 1620, 2491
EarI CTCTTC 3 cut(s) 1206, 1620, 2491
Ecl136II GAGCTC 1 cut(s) 1028
Eco105I TACGTA 1 cut(s) 1574
Eco130I CCWWGG 5 cut(s) 123, 1369, 1444, 2074, 2141
Eco24I GRGCYC 1 cut(s) 1030
Eco32I GATATC 1 cut(s) 82
Eco47I GGWCC 2 cut(s) 1140, 2454
Eco53kI GAGCTC 1 cut(s) 1028
Eco57I CTGAAG 3 cut(s) 890, 1064, 1230
Eco88I CYCGRG 1 cut(s) 2357
EcoICRI GAGCTC 1 cut(s) 1028
EcoO109I RGGNCCY 1 cut(s) 1140
EcoRII CCWGG 3 cut(s) 1136, 1282, 1517
EcoRV GATATC 1 cut(s) 82
EcoT14I CCWWGG 5 cut(s) 123, 1369, 1444, 2074, 2141
EcoT22I ATGCAT 1 cut(s) 1546
EcoT38I GRGCYC 1 cut(s) 1030
ErhI CCWWGG 5 cut(s) 123, 1369, 1444, 2074, 2141
FaeI CATG 9 cut(s) 94, 122, 133, 224, 404, 1199, 1277, 1448, 2417
FaqI GGGAC 3 cut(s) 101, 1566, 2340
FatI CATG 9 cut(s) 90, 118, 129, 220, 400, 1195, 1273, 1444, 2413
FauI CCCGC 1 cut(s) 1626
FblI GTMKAC 1 cut(s) 2377
Fnu4HI GCNGC 6 cut(s) 216, 484, 1631, 1712, 2209, 2482
FokI GGATG 5 cut(s) 40, 475, 798, 867, 1198
FriOI GRGCYC 1 cut(s) 1030
Fsp4HI GCNGC 6 cut(s) 216, 484, 1631, 1712, 2209, 2482
FspBI CTAG 4 cut(s) 959, 1265, 1904, 2312
FspI TGCGCA 1 cut(s) 1715
GlaI GCGC 2 cut(s) 1427, 1715
GluI GCNGC 6 cut(s) 216, 484, 1631, 1712, 2209, 2482
GsuI CTGGAG 4 cut(s) 89, 1044, 1781, 2315
HaeIII GGCC 2 cut(s) 254, 1236
HapII CCGG 4 cut(s) 187, 737, 942, 2441
HgaI GACGC 1 cut(s) 1432
HhaI GCGC 2 cut(s) 1428, 1716
Hin1II CATG 9 cut(s) 94, 122, 133, 224, 404, 1199, 1277, 1448, 2417
Hin6I GCGC 2 cut(s) 1426, 1714
HinP1I GCGC 2 cut(s) 1426, 1714
HincII GTYRAC 2 cut(s) 1566, 1590
HindII GTYRAC 2 cut(s) 1566, 1590
HindIII AAGCTT 3 cut(s) 71, 1781, 2246
HpaI GTTAAC 1 cut(s) 1566
HpaII CCGG 4 cut(s) 187, 737, 942, 2441
HphI GGTGA 4 cut(s) 12, 1460, 2044, 2402
Hpy166II GTNNAC 8 cut(s) 273, 956, 1102, 1566, 1590, 1790, 2052, 2378
Hpy188I TCNGA 9 cut(s) 314, 909, 1177, 1292, 1506, 1551, 1801, 2004, 2261
Hpy8I GTNNAC 8 cut(s) 273, 956, 1102, 1566, 1590, 1790, 2052, 2378
HpyAV CCTTC 6 cut(s) 88, 245, 1806, 1979, 2123, 2156
HpyCH4III ACNGT 9 cut(s) 559, 596, 650, 1172, 1352, 1684, 1919, 2066, 2298
HpyCH4IV ACGT 4 cut(s) 9, 355, 1573, 2183
HpyF10VI GCNNNNNNNGC 6 cut(s) 202, 224, 1025, 1214, 1425, 1684
HpyF3I CTNAG 7 cut(s) 797, 833, 1144, 1156, 1493, 2003, 2258
HpySE526I ACGT 4 cut(s) 9, 355, 1573, 2183
Hsp92II CATG 9 cut(s) 94, 122, 133, 224, 404, 1199, 1277, 1448, 2417
HspAI GCGC 2 cut(s) 1426, 1714
KroI GCCGGC 1 cut(s) 736
KroNI GCCGGC 1 cut(s) 738
KspAI GTTAAC 1 cut(s) 1566
Kzo9I GATC 4 cut(s) 36, 403, 2261, 2435
LguI GCTCTTC 1 cut(s) 2491
LmnI GCTCC 3 cut(s) 160, 1025, 1627
Lsp1109I GCAGC 5 cut(s) 227, 1617, 1698, 2195, 2493
LweI GCATC 8 cut(s) 62, 142, 214, 289, 309, 1176, 1748, 1926
MabI ACCWGGT 1 cut(s) 1517
MaeI CTAG 4 cut(s) 959, 1265, 1904, 2312
MaeII ACGT 4 cut(s) 9, 355, 1573, 2183
MaeIII GTNAC 6 cut(s) 247, 351, 514, 894, 1420, 1913
MalI GATC 4 cut(s) 38, 405, 2263, 2437
MbiI CCGCTC 2 cut(s) 486, 2047
MboI GATC 4 cut(s) 36, 403, 2261, 2435
MfeI CAATTG 3 cut(s) 372, 1339, 1950
MflI RGATCY 1 cut(s) 2261
MhlI GDGCHC 3 cut(s) 958, 1030, 1104
MlyI GAGTC 4 cut(s) 810, 1073, 1387, 2029
Mph1103I ATGCAT 1 cut(s) 1546
MroNI GCCGGC 1 cut(s) 736
MroXI GAANNNNTTC 2 cut(s) 1359, 1701
MseI TTAA 5 cut(s) 612, 773, 888, 1565, 1670
MslI CAYNNNNRTG 1 cut(s) 2057
MspA1I CMGCKG 1 cut(s) 1711
MspI CCGG 4 cut(s) 187, 737, 942, 2441
MspR9I CCNGG 4 cut(s) 942, 1138, 1284, 1519
MunI CAATTG 3 cut(s) 372, 1339, 1950
MvaI CCWGG 3 cut(s) 1138, 1284, 1519
MvnI CGCG 1 cut(s) 1426
MwoI GCNNNNNNNGC 6 cut(s) 202, 224, 1025, 1214, 1425, 1684
NaeI GCCGGC 1 cut(s) 738
NciI CCSGG 1 cut(s) 942
NcoI CCATGG 1 cut(s) 1444
NdeII GATC 4 cut(s) 36, 403, 2261, 2435
NgoMIV GCCGGC 1 cut(s) 736
NlaIII CATG 9 cut(s) 94, 122, 133, 224, 404, 1199, 1277, 1448, 2417
NmuCI GTSAC 2 cut(s) 1420, 1913
NsbI TGCGCA 1 cut(s) 1715
NsiI ATGCAT 1 cut(s) 1546
NspI RCATGY 1 cut(s) 122
NspV TTCGAA 2 cut(s) 816, 2116
PagI TCATGA 2 cut(s) 220, 400
PaqCI CACCTGC 1 cut(s) 31
PciSI GCTCTTC 1 cut(s) 2491
PdiI GCCGGC 1 cut(s) 738
PdmI GAANNNNTTC 2 cut(s) 1359, 1701
PfeI GAWTC 9 cut(s) 431, 751, 937, 970, 1287, 1375, 1898, 2150, 2344
PflFI GACNNNGTC 1 cut(s) 308
PflMI CCANNNNNTGG 3 cut(s) 1370, 1842, 2075
PfoI TCCNGGA 1 cut(s) 1282
PkrI GCNGC 6 cut(s) 217, 485, 1632, 1713, 2210, 2483
PleI GAGTC 4 cut(s) 809, 1072, 1387, 2028
PpsI GAGTC 4 cut(s) 809, 1072, 1387, 2028
Ppu21I YACGTR 2 cut(s) 356, 1574
PpuMI RGGWCCY 1 cut(s) 1140
PsiI TTATAA 1 cut(s) 501
Psp124BI GAGCTC 1 cut(s) 1030
Psp5II RGGWCCY 1 cut(s) 1140
Psp6I CCWGG 3 cut(s) 1136, 1282, 1517
PspGI CCWGG 3 cut(s) 1136, 1282, 1517
PspPI GGNCC 2 cut(s) 1140, 2454
PspPPI RGGWCCY 1 cut(s) 1140
PsrI GAACNNNNNNTAC 2 cut(s) 1990, 2022
PstI CTGCAG 1 cut(s) 1997
PstNI CAGNNNCTG 2 cut(s) 913, 2194
PsuI RGATCY 1 cut(s) 2261
PsyI GACNNNGTC 1 cut(s) 308
PvuII CAGCTG 1 cut(s) 1711
RsaI GTAC 5 cut(s) 1169, 1456, 2063, 2429, 2473
RsaNI GTAC 5 cut(s) 1168, 1455, 2062, 2428, 2472
RseI CAYNNNNRTG 1 cut(s) 2057
SacI GAGCTC 1 cut(s) 1030
SapI GCTCTTC 1 cut(s) 2491
SaqAI TTAA 5 cut(s) 612, 773, 888, 1565, 1670
SatI GCNGC 6 cut(s) 216, 484, 1631, 1712, 2209, 2482
Sau3AI GATC 4 cut(s) 36, 403, 2261, 2435
Sau96I GGNCC 2 cut(s) 1140, 2454
SchI GAGTC 4 cut(s) 810, 1073, 1387, 2029
ScrFI CCNGG 4 cut(s) 942, 1138, 1284, 1519
SduI GDGCHC 3 cut(s) 958, 1030, 1104
SexAI ACCWGGT 1 cut(s) 1517
SfaNI GCATC 8 cut(s) 62, 142, 214, 289, 309, 1176, 1748, 1926
SfcI CTRYAG 1 cut(s) 1993
SfuI TTCGAA 2 cut(s) 816, 2116
SinI GGWCC 2 cut(s) 1140, 2454
SmiMI CAYNNNNRTG 1 cut(s) 2057
SmlI CTYRAG 6 cut(s) 206, 1388, 1555, 2042, 2131, 2363
SmoI CTYRAG 6 cut(s) 206, 1388, 1555, 2042, 2131, 2363
SnaBI TACGTA 1 cut(s) 1574
SsiI CCGC 6 cut(s) 484, 1189, 1217, 1633, 2047, 2452
SspI AATATT 2 cut(s) 991, 1060
SspMI CTAG 4 cut(s) 959, 1265, 1904, 2312
SstI GAGCTC 1 cut(s) 1030
StyD4I CCNGG 4 cut(s) 940, 1136, 1282, 1517
StyI CCWWGG 5 cut(s) 123, 1369, 1444, 2074, 2141
TaaI ACNGT 9 cut(s) 559, 596, 650, 1172, 1352, 1684, 1919, 2066, 2298
TaiI ACGT 4 cut(s) 12, 358, 1576, 2186
TaqI TCGA 8 cut(s) 147, 705, 816, 1523, 1934, 2018, 2116, 2342
TatI WGTACW 4 cut(s) 1454, 2061, 2427, 2471
TauI GCSGC 1 cut(s) 486
TfiI GAWTC 9 cut(s) 431, 751, 937, 970, 1287, 1375, 1898, 2150, 2344
Tru1I TTAA 5 cut(s) 612, 773, 888, 1565, 1670
Tru9I TTAA 5 cut(s) 612, 773, 888, 1565, 1670
TscAI CASTG 8 cut(s) 918, 1501, 1689, 1797, 1822, 1827, 2195, 2392
TseFI GTSAC 2 cut(s) 1420, 1913
TseI GCWGC 5 cut(s) 215, 1630, 1711, 2208, 2481
Tsp45I GTSAC 2 cut(s) 1420, 1913
TspGWI ACGGA 1 cut(s) 424
TspRI CASTG 8 cut(s) 918, 1501, 1689, 1797, 1822, 1827, 2195, 2392
Tth111I GACNNNGTC 1 cut(s) 308
Van91I CCANNNNNTGG 3 cut(s) 1370, 1842, 2075
VneI GTGCAC 2 cut(s) 954, 1100
VpaK11BI GGWCC 2 cut(s) 1140, 2454
XapI RAATTY 5 cut(s) 477, 964, 1224, 1252, 2215
XbaI TCTAGA 1 cut(s) 2311
XceI RCATGY 1 cut(s) 122
XmiI GTMKAC 1 cut(s) 2377
XmnI GAANNNNTTC 2 cut(s) 1359, 1701
XspI CTAG 4 cut(s) 959, 1265, 1904, 2312
Zsp2I ATGCAT 1 cut(s) 1546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.