Rh6BG171800

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000400
Physical Location & Seq
Reverse (-)
28381438 .. 28389024
7587 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG171800.1

Sequence Viewer

Length: 699 bp
ATGGAAGCAGCTGCAAGCATAGTTTTATCTCCTGCTTTGCAAGTGCTGTTTGACAGACTAGCATCCCCGCTCCTGGAAAGGACTGCTGATATTTTCGGTTTCAAGGACAACCTCCGCAGCCTACGACATGCGTTGTCAAGGGCTCAAGCTACCCTTGAGGATGCAGAAGAGCAACAATTCACCAGCAAAGCCATTAGACTTTGGCTGTCAGACCTCAAGAATGCAGCCTTGGATGCACAGGATCTTCTGGAGTTCTTCATTGCTCACGAAACTGTGGAGAAAGAGACTGGCAAGGATGTTCCTCTGGTTATGCTTAGTGCTTCTAATCATCCGGACAATGTCAAAAAGGTTCTTCAGGCCTTAGAACTGAGTCTATCAGAAAGATTTCCATTGTTGAGTGTTAGAGATACTACCCTGCCTAGTATGGCCGATCGAAGATGCCATAACAGGGAGACTAGTTCCCTTTTTGTGGACTCGAAGATATATGGAAGAGATGATGACAAAGACAGCAAATTGTTGCAGCAGAACACAGTGGTTAGATGGTGGTGTGCAATATCCAGGCGTGCAGCAGCAGGAAATCGATCACCCACTTCTTCAGAATCGAAGAGCAAGGACCAAGGAAAGGGTGTTTTGAAGAACACAGTTGTTTTCTTTTGGATTTCAGCTTATGGGTGTTTTGAGTGGCTGTGGCGGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 map03460
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

232

Amino Acids

26.2

Weight (kDa)

6.91

Isoelectric Point (pI)

45.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 10 - 98 4e-18 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000400)

Species Orthologous Gene IDs
malus_domestica MD05G1050700.v1.1 MD05G1050800.v1.1 MD08G1110700.v1.1 MD15G1090000.v1.1 MD15G1090100.v1.1 MD15G1090300.v1.1
prunus_persica Prupe.1G541300_v2.0.a1 Prupe.1G541300_v2.0.a1 Prupe.8G077100_v2.0.a1 Prupe.8G077200_v2.0.a1 Prupe.8G077500_v2.0.a1 Prupe.8G077600_v2.0.a1 Prupe.8G211300_v2.0.a1
pyrus_communis pycom05g04280 pycom08g09220 pycom15g08440
rosa_chinensis RchiOBHm_Chr1g0348461 RchiOBHm_Chr1g0348561 RchiOBHm_Chr6g0269201 RchiOBHm_Chr6g0269411 RchiOBHm_Chr6g0269421 RchiOBHm_Chr6g0269431 RchiOBHm_Chr7g0232901 RchiOBHm_Chr7g0232931 RchiOBHm_Chr7g0232961 RchiOBHm_Chr7g0232971
rosa_laevigata RLG00000001310
rosa_multiflora Rmu_sc0000091.1_g000001 Rmu_sc0000091.1_g000002 Rmu_sc0000091.1_g000008 Rmu_sc0000743.1_g000003 Rmu_sc0000743.1_g000004 Rmu_sc0005353.1_g000002 Rmu_sc0008668.1_g000002 Rmu_sc0015938.1_g000001 Rmu_ssc0000018.1_g000023 Rmu_ssc0000291.1_g000019 Rmu_ssc0000291.1_g000020 Rmu_ssc0000291.1_g000026 Rmu_ssc0000291.1_g000027
rosa_roxburghii Rroxscaffold_3G00227800 Rroxscaffold_3G00227820 Rroxscaffold_4G00306930 Rroxscaffold_4G00306950 Rroxscaffold_7G00198730
rosa_rugosa Rorug01G0194900 Rorug01G0194900 Rorug01G0195000 Rorug01G0195100 Rorug06G0045900 Rorug06G0046100 Rorug06G0047500 Rorug06G0047500 Rorug06G0047600 Rorug06G0047700 Rorug07G0276400 Rorug07G0276600 Rorug07G0276800.1 Rorug07G0276900
rosa_samantha Rh1AG213000 Rh1AG213100 Rh1BG179500 Rh1CG197300 Rh1CG197400 Rh1DG209600 Rh6AG166200 Rh6AG168000 Rh6AG168100 Rh6AG168200 Rh6BG171700 Rh6BG171800 Rh6BG173500 Rh6CG165300 Rh6CG167500 Rh6CG167600 Rh6DG156900 Rh6DG159400 Rh6DG159500 Rh6DG159600 Rh7AG431600 Rh7AG431700 Rh7AG431800 Rh7AG432100 Rh7AG432200 Rh7BG404700 Rh7BG404800 Rh7BG404900 Rh7BG405000 Rh7CG450600 Rh7CG450700 Rh7CG450800 Rh7CG451200 Rh7DG421300
rosa_wichuraiana Rw0G004710 Rw0G010410 Rw1G018020 Rw1G018040 Rw6G014350 Rw6G014450 Rw6G014470 Rw7G035660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 70
AccIII TCCGGA 1 cut(s) 331
AciI CCGC 3 cut(s) 68, 115, 691
AclWI GGATC 1 cut(s) 249
AcoI YGGCCR 1 cut(s) 426
AcuI CTGAAG 2 cut(s) 338, 579
AfiI CCNNNNNNNGG 4 cut(s) 73, 448, 469, 622
AgsI TTSAA 2 cut(s) 103, 634
AhlI ACTAGT 1 cut(s) 455
AjnI CCWGG 2 cut(s) 72, 557
AjuI GAANNNNNNNTTGG 2 cut(s) 212, 244
AluBI AGCT 3 cut(s) 11, 149, 665
AluI AGCT 3 cut(s) 11, 149, 665
Alw26I GTCTC 2 cut(s) 278, 446
AlwI GGATC 1 cut(s) 249
Aor13HI TCCGGA 1 cut(s) 331
AoxI GGCC 2 cut(s) 357, 426
ApeKI GCWGC 7 cut(s) 8, 11, 117, 224, 520, 566, 569
Asp700I GAANNNNTTC 1 cut(s) 384
AspS9I GGNCC 1 cut(s) 613
AsuHPI GGTGA 2 cut(s) 172, 576
AvaII GGWCC 1 cut(s) 613
BanII GRGCYC 1 cut(s) 145
BbvI GCAGC 6 cut(s) 20, 129, 236, 532, 578, 581
BccI CCATC 1 cut(s) 534
BciT130I CCWGG 2 cut(s) 74, 559
BcoDI GTCTC 2 cut(s) 278, 446
BcuI ACTAGT 1 cut(s) 455
BfaI CTAG 3 cut(s) 59, 420, 456
BisI GCNGC 7 cut(s) 9, 12, 118, 225, 521, 567, 570
BlsI GCNGC 7 cut(s) 10, 13, 119, 226, 522, 568, 571
Bme1390I CCNGG 2 cut(s) 74, 559
Bme18I GGWCC 1 cut(s) 613
BmgT120I GGNCC 1 cut(s) 613
BmrFI CCNGG 2 cut(s) 74, 559
BmsI GCATC 4 cut(s) 71, 151, 223, 428
BpmI CTGGAG 1 cut(s) 269
BpuEI CTTGAG 3 cut(s) 129, 176, 200
Bsa29I ATCGAT 1 cut(s) 580
BsaJI CCNNGG 2 cut(s) 228, 616
BsaWI WCCGGW 1 cut(s) 331
Bsc4I CCNNNNNNNGG 4 cut(s) 73, 448, 469, 622
Bse1I ACTGG 1 cut(s) 292
Bse3DI GCAATG 1 cut(s) 258
BseAI TCCGGA 1 cut(s) 331
BseBI CCWGG 2 cut(s) 74, 559
BseCI ATCGAT 1 cut(s) 580
BseDI CCNNGG 2 cut(s) 228, 616
BseGI GGATG 5 cut(s) 62, 166, 238, 301, 328
BseLI CCNNNNNNNGG 4 cut(s) 73, 448, 469, 622
BseMI GCAATG 1 cut(s) 258
BseMII CTCAG 1 cut(s) 359
BseNI ACTGG 1 cut(s) 292
BseXI GCAGC 6 cut(s) 20, 129, 236, 532, 578, 581
BsgI GTGCAG 1 cut(s) 585
Bsh1285I CGRYCG 1 cut(s) 433
BshFI GGCC 2 cut(s) 359, 428
BshVI ATCGAT 1 cut(s) 580
BsiEI CGRYCG 1 cut(s) 433
BsiSI CCGG 1 cut(s) 332
BslI CCNNNNNNNGG 4 cut(s) 73, 448, 469, 622
BsmAI GTCTC 2 cut(s) 278, 446
BsmI GAATGC 1 cut(s) 226
BsnI GGCC 2 cut(s) 359, 428
Bsp1286I GDGCHC 1 cut(s) 145
Bsp13I TCCGGA 1 cut(s) 331
Bsp143I GATC 3 cut(s) 241, 430, 581
BspACI CCGC 3 cut(s) 68, 115, 691
BspANI GGCC 2 cut(s) 359, 428
BspCNI CTCAG 1 cut(s) 360
BspDI ATCGAT 1 cut(s) 580
BspEI TCCGGA 1 cut(s) 331
BspPI GGATC 1 cut(s) 249
BspQI GCTCTTC 2 cut(s) 162, 599
BsrBI CCGCTC 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 258
BsrI ACTGG 1 cut(s) 292
BssECI CCNNGG 2 cut(s) 228, 616
BssMI GATC 3 cut(s) 241, 430, 581
BssT1I CCWWGG 2 cut(s) 228, 616
Bst2UI CCWGG 2 cut(s) 74, 559
Bst4CI ACNGT 3 cut(s) 274, 532, 643
Bst6I CTCTTC 3 cut(s) 162, 484, 599
BstC8I GCNNGC 2 cut(s) 16, 564
BstDEI CTNAG 3 cut(s) 314, 361, 368
BstF5I GGATG 5 cut(s) 62, 166, 238, 301, 328
BstKTI GATC 3 cut(s) 244, 433, 584
BstMAI GTCTC 2 cut(s) 278, 446
BstMBI GATC 3 cut(s) 241, 430, 581
BstMCI CGRYCG 1 cut(s) 433
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNI CCWGG 2 cut(s) 74, 559
BstNSI RCATGY 1 cut(s) 131
BstSCI CCNGG 2 cut(s) 72, 557
BstV1I GCAGC 6 cut(s) 20, 129, 236, 532, 578, 581
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
Bsu15I ATCGAT 1 cut(s) 580
BsuRI GGCC 2 cut(s) 359, 428
BsuTUI ATCGAT 1 cut(s) 580
BtsCI GGATG 5 cut(s) 62, 166, 238, 301, 328
BtsIMutI CAGTG 1 cut(s) 537
Cac8I GCNNGC 2 cut(s) 16, 564
Cfr13I GGNCC 1 cut(s) 613
ClaI ATCGAT 1 cut(s) 580
CviAII CATG 1 cut(s) 128
DdeI CTNAG 3 cut(s) 314, 361, 368
DpnI GATC 3 cut(s) 243, 432, 583
DpnII GATC 3 cut(s) 241, 430, 581
EaeI YGGCCR 1 cut(s) 426
Eam1104I CTCTTC 3 cut(s) 162, 484, 599
EarI CTCTTC 3 cut(s) 162, 484, 599
Eco130I CCWWGG 2 cut(s) 228, 616
Eco147I AGGCCT 1 cut(s) 359
Eco24I GRGCYC 1 cut(s) 145
Eco47I GGWCC 1 cut(s) 613
Eco57I CTGAAG 2 cut(s) 338, 579
EcoRII CCWGG 2 cut(s) 72, 557
EcoT14I CCWWGG 2 cut(s) 228, 616
EcoT38I GRGCYC 1 cut(s) 145
ErhI CCWWGG 2 cut(s) 228, 616
FaeI CATG 1 cut(s) 131
FaiI YATR 8 cut(s) 20, 129, 311, 425, 444, 484, 486, 669
FalI AAGNNNNNCTT 2 cut(s) 138, 170
FatI CATG 1 cut(s) 127
FauI CCCGC 2 cut(s) 75, 684
Fnu4HI GCNGC 7 cut(s) 9, 12, 118, 225, 521, 567, 570
FokI GGATG 5 cut(s) 49, 173, 245, 308, 315
FriOI GRGCYC 1 cut(s) 145
Fsp4HI GCNGC 7 cut(s) 9, 12, 118, 225, 521, 567, 570
FspBI CTAG 3 cut(s) 59, 420, 456
GluI GCNGC 7 cut(s) 9, 12, 118, 225, 521, 567, 570
GsuI CTGGAG 1 cut(s) 269
HaeIII GGCC 2 cut(s) 359, 428
HapII CCGG 1 cut(s) 332
Hin1II CATG 1 cut(s) 131
HinfI GANTC 3 cut(s) 370, 473, 599
HpaII CCGG 1 cut(s) 332
HphI GGTGA 2 cut(s) 172, 576
Hpy166II GTNNAC 1 cut(s) 472
Hpy188I TCNGA 4 cut(s) 211, 379, 598, 698
Hpy188III TCNNGA 4 cut(s) 217, 248, 266, 332
Hpy8I GTNNAC 1 cut(s) 472
HpyCH4III ACNGT 3 cut(s) 274, 532, 643
HpyCH4V TGCA 8 cut(s) 14, 40, 164, 224, 236, 520, 551, 566
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 3 cut(s) 314, 361, 368
Hsp92II CATG 1 cut(s) 131
Kpn2I TCCGGA 1 cut(s) 331
Kzo9I GATC 3 cut(s) 241, 430, 581
LguI GCTCTTC 2 cut(s) 162, 599
LmnI GCTCC 1 cut(s) 75
Lsp1109I GCAGC 6 cut(s) 20, 129, 236, 532, 578, 581
LweI GCATC 4 cut(s) 71, 151, 223, 428
MaeI CTAG 3 cut(s) 59, 420, 456
MalI GATC 3 cut(s) 243, 432, 583
MbiI CCGCTC 1 cut(s) 70
MboI GATC 3 cut(s) 241, 430, 581
MflI RGATCY 1 cut(s) 241
MhlI GDGCHC 1 cut(s) 145
MluCI AATT 2 cut(s) 176, 512
MlyI GAGTC 2 cut(s) 379, 467
MnlI CCTC 4 cut(s) 122, 151, 224, 312
MroI TCCGGA 1 cut(s) 331
MroXI GAANNNNTTC 1 cut(s) 384
MspA1I CMGCKG 1 cut(s) 11
MspI CCGG 1 cut(s) 332
MspR9I CCNGG 2 cut(s) 74, 559
Mva1269I GAATGC 1 cut(s) 226
MvaI CCWGG 2 cut(s) 74, 559
MwoI GCNNNNNNNGC 1 cut(s) 233
NdeII GATC 3 cut(s) 241, 430, 581
NlaIII CATG 1 cut(s) 131
NspI RCATGY 1 cut(s) 131
PceI AGGCCT 1 cut(s) 359
PciSI GCTCTTC 2 cut(s) 162, 599
PctI GAATGC 1 cut(s) 226
PdmI GAANNNNTTC 1 cut(s) 384
PfeI GAWTC 1 cut(s) 599
PflFI GACNNNGTC 1 cut(s) 338
PfoI TCCNGGA 1 cut(s) 72
PkrI GCNGC 7 cut(s) 10, 13, 119, 226, 522, 568, 571
Ple19I CGATCG 1 cut(s) 433
PleI GAGTC 2 cut(s) 378, 467
PpsI GAGTC 2 cut(s) 378, 467
Psp6I CCWGG 2 cut(s) 72, 557
PspGI CCWGG 2 cut(s) 72, 557
PspPI GGNCC 1 cut(s) 613
PsuI RGATCY 1 cut(s) 241
PsyI GACNNNGTC 1 cut(s) 338
PvuI CGATCG 1 cut(s) 433
PvuII CAGCTG 1 cut(s) 11
SapI GCTCTTC 2 cut(s) 162, 599
SatI GCNGC 7 cut(s) 9, 12, 118, 225, 521, 567, 570
Sau3AI GATC 3 cut(s) 241, 430, 581
Sau96I GGNCC 1 cut(s) 613
SchI GAGTC 2 cut(s) 379, 467
ScrFI CCNGG 2 cut(s) 74, 559
SduI GDGCHC 1 cut(s) 145
SetI ASST 6 cut(s) 13, 114, 151, 216, 351, 667
SfaNI GCATC 4 cut(s) 71, 151, 223, 428
SinI GGWCC 1 cut(s) 613
SmlI CTYRAG 3 cut(s) 144, 155, 215
SmoI CTYRAG 3 cut(s) 144, 155, 215
SpeI ACTAGT 1 cut(s) 455
Sse9I AATT 2 cut(s) 176, 512
SseBI AGGCCT 1 cut(s) 359
SsiI CCGC 3 cut(s) 68, 115, 691
SspMI CTAG 3 cut(s) 59, 420, 456
StuI AGGCCT 1 cut(s) 359
StyD4I CCNGG 2 cut(s) 72, 557
StyI CCWWGG 2 cut(s) 228, 616
TaaI ACNGT 3 cut(s) 274, 532, 643
TaqI TCGA 4 cut(s) 433, 476, 580, 602
TasI AATT 2 cut(s) 176, 512
TfiI GAWTC 1 cut(s) 599
TscAI CASTG 1 cut(s) 537
TseI GCWGC 7 cut(s) 8, 11, 117, 224, 520, 566, 569
TspDTI ATGAA 1 cut(s) 247
TspRI CASTG 1 cut(s) 537
Tth111I GACNNNGTC 1 cut(s) 338
VpaK11BI GGWCC 1 cut(s) 613
XceI RCATGY 1 cut(s) 131
XmnI GAANNNNTTC 1 cut(s) 384
XspI CTAG 3 cut(s) 59, 420, 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.