Rh7CG451200

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000400
Physical Location & Seq
Reverse (-)
59317583 .. 59325574
7992 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG451200.1

Sequence Viewer

Length: 183 bp
ATGATTGGTAAGAAGTCACGCAAACTAAAGGAGCTTCGTGCAAGATTGGATGATGTAGCCAAGGAAATGTCTTCTTCCAAGCTCAAAGAAACTCAGTCATATGGACGGTCAAGTACCATGGAGCGACGTGAAACTGGAACAAAGTTCCCAGATGAGATGAGTTGGTCTCAGAAACTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 map03460
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

60

Amino Acids

7.0

Weight (kDa)

9.82

Isoelectric Point (pI)

55.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000400)

Species Orthologous Gene IDs
malus_domestica MD05G1050700.v1.1 MD05G1050800.v1.1 MD08G1110700.v1.1 MD15G1090000.v1.1 MD15G1090100.v1.1 MD15G1090300.v1.1
prunus_persica Prupe.1G541300_v2.0.a1 Prupe.1G541300_v2.0.a1 Prupe.8G077100_v2.0.a1 Prupe.8G077200_v2.0.a1 Prupe.8G077500_v2.0.a1 Prupe.8G077600_v2.0.a1 Prupe.8G211300_v2.0.a1
pyrus_communis pycom05g04280 pycom08g09220 pycom15g08440
rosa_chinensis RchiOBHm_Chr1g0348461 RchiOBHm_Chr1g0348561 RchiOBHm_Chr6g0269201 RchiOBHm_Chr6g0269411 RchiOBHm_Chr6g0269421 RchiOBHm_Chr6g0269431 RchiOBHm_Chr7g0232901 RchiOBHm_Chr7g0232931 RchiOBHm_Chr7g0232961 RchiOBHm_Chr7g0232971
rosa_laevigata RLG00000001310
rosa_multiflora Rmu_sc0000091.1_g000001 Rmu_sc0000091.1_g000002 Rmu_sc0000091.1_g000008 Rmu_sc0000743.1_g000003 Rmu_sc0000743.1_g000004 Rmu_sc0005353.1_g000002 Rmu_sc0008668.1_g000002 Rmu_sc0015938.1_g000001 Rmu_ssc0000018.1_g000023 Rmu_ssc0000291.1_g000019 Rmu_ssc0000291.1_g000020 Rmu_ssc0000291.1_g000026 Rmu_ssc0000291.1_g000027
rosa_roxburghii Rroxscaffold_3G00227800 Rroxscaffold_3G00227820 Rroxscaffold_4G00306930 Rroxscaffold_4G00306950 Rroxscaffold_7G00198730
rosa_rugosa Rorug01G0194900 Rorug01G0194900 Rorug01G0195000 Rorug01G0195100 Rorug06G0045900 Rorug06G0046100 Rorug06G0047500 Rorug06G0047500 Rorug06G0047600 Rorug06G0047700 Rorug07G0276400 Rorug07G0276600 Rorug07G0276800.1 Rorug07G0276900
rosa_samantha Rh1AG213000 Rh1AG213100 Rh1BG179500 Rh1CG197300 Rh1CG197400 Rh1DG209600 Rh6AG166200 Rh6AG168000 Rh6AG168100 Rh6AG168200 Rh6BG171700 Rh6BG171800 Rh6BG173500 Rh6CG165300 Rh6CG167500 Rh6CG167600 Rh6DG156900 Rh6DG159400 Rh6DG159500 Rh6DG159600 Rh7AG431600 Rh7AG431700 Rh7AG431800 Rh7AG432100 Rh7AG432200 Rh7BG404700 Rh7BG404800 Rh7BG404900 Rh7BG405000 Rh7CG450600 Rh7CG450700 Rh7CG450800 Rh7CG451200 Rh7DG421300
rosa_wichuraiana Rw0G004710 Rw0G010410 Rw1G018020 Rw1G018040 Rw6G014350 Rw6G014450 Rw6G014470 Rw7G035660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 115
AjiI CACGTC 1 cut(s) 128
AluBI AGCT 2 cut(s) 34, 82
AluI AGCT 2 cut(s) 34, 82
Alw26I GTCTC 1 cut(s) 171
BbsI GAAGAC 1 cut(s) 63
BcoDI GTCTC 1 cut(s) 171
BmgBI CACGTC 1 cut(s) 128
BpiI GAAGAC 1 cut(s) 63
BplI GAGNNNNNCTC 2 cut(s) 151, 183
BsaI GGTCTC 1 cut(s) 171
BsaJI CCNNGG 2 cut(s) 60, 117
Bse1I ACTGG 1 cut(s) 139
BseDI CCNNGG 2 cut(s) 60, 117
BseGI GGATG 1 cut(s) 55
BseMII CTCAG 2 cut(s) 107, 182
BseNI ACTGG 1 cut(s) 139
BsmAI GTCTC 1 cut(s) 171
Bso31I GGTCTC 1 cut(s) 171
Bsp19I CCATGG 1 cut(s) 117
BspCNI CTCAG 2 cut(s) 106, 181
BspTNI GGTCTC 1 cut(s) 171
BsrI ACTGG 1 cut(s) 139
BssECI CCNNGG 2 cut(s) 60, 117
BssT1I CCWWGG 2 cut(s) 60, 117
Bst4CI ACNGT 1 cut(s) 108
BstDEI CTNAG 2 cut(s) 93, 168
BstDSI CCRYGG 1 cut(s) 117
BstF5I GGATG 1 cut(s) 55
BstMAI GTCTC 1 cut(s) 171
BstV2I GAAGAC 1 cut(s) 63
BtgI CCRYGG 1 cut(s) 117
BtrI CACGTC 1 cut(s) 128
BtsCI GGATG 1 cut(s) 55
Csp6I GTAC 1 cut(s) 114
CviAII CATG 1 cut(s) 118
CviJI RGCY 3 cut(s) 34, 59, 82
CviKI_1 RGCY 3 cut(s) 34, 59, 82
CviQI GTAC 1 cut(s) 114
DdeI CTNAG 2 cut(s) 93, 168
Eco130I CCWWGG 2 cut(s) 60, 117
Eco31I GGTCTC 1 cut(s) 171
EcoT14I CCWWGG 2 cut(s) 60, 117
ErhI CCWWGG 2 cut(s) 60, 117
FaeI CATG 1 cut(s) 121
FaiI YATR 3 cut(s) 100, 102, 119
FatI CATG 1 cut(s) 117
FauNDI CATATG 1 cut(s) 100
FokI GGATG 1 cut(s) 62
Hin1II CATG 1 cut(s) 121
Hpy188I TCNGA 1 cut(s) 171
Hpy99I CGWCG 1 cut(s) 129
HpyCH4III ACNGT 1 cut(s) 108
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 1 cut(s) 41
HpyF3I CTNAG 2 cut(s) 93, 168
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 1 cut(s) 121
LmnI GCTCC 2 cut(s) 31, 121
LpnPI CCDG 2 cut(s) 120, 162
MaeII ACGT 1 cut(s) 127
MaeIII GTNAC 1 cut(s) 15
MboII GAAGA 2 cut(s) 63, 66
NcoI CCATGG 1 cut(s) 117
NdeI CATATG 1 cut(s) 100
NlaIII CATG 1 cut(s) 121
NmuCI GTSAC 1 cut(s) 15
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
SetI ASST 3 cut(s) 36, 84, 130
StyI CCWWGG 2 cut(s) 60, 117
TaaI ACNGT 1 cut(s) 108
TaiI ACGT 1 cut(s) 130
TseFI GTSAC 1 cut(s) 15
Tsp45I GTSAC 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.