Rmu_sc0000743.1_g000003

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000743.1
OG0000400
Physical Location & Seq
Forward (+)
20077 .. 21075
999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000743.1_g000003.1.cds

Sequence Viewer

Length: 999 bp
atggcagacctggtcgtatccccagctttgcaagtgatctttgacagaatagcatcccctgtcatagaaaagtttgctgacttgtgggatttcaaggacaacctccagaggctaagagagaccttgatgctgattcaacctactctcgaggatgcggaagagcaacaattctccaacaaagctgtcaaaatttggttgtcaaagctcgagaaggcagcttatgatgctgaggacggactgcactacttgactgctaaaggtatgatccctagcagtcgttatcaacttgatgatcttaagactgcttcccacattaaagagatgcttctggcattagaaacaactgtaaatgagggacttgttaagtttacttttacgaggcctaatatggtagatcgtcgatcttccgtgtgggagactagctcttttgtcatcaagtcacagatatatggaagagatgatgacaaagataaggtcgtgaaactgttgctgtcttctcaagctcaccaggaaggatatgcatcttgtatcgcaatagttggtattggaggaattggtaagaccactcttgctcaattagcatataatgacgagagagtaatccaaaacttcgatgttaggatgtggatttatgtctctgatgatttcaatgtcaagaagatcatgaagacaattatcgagtcagtaaccaatgatgagtgcaggttctcagacattgaacttcttcagtctcagctttggcgtctgctgcacaataaaagataccttctcgtgttggatgatgtttggacttcgcatcacaacgactgggacaaactaaaacctttgtttagagggggtgttgatggatgcaaagtcattgttaccacccgcaatacaaaaaccgcactcatgacagactctccaaattcccctttttatttgaagggcttagaagaggaggattgtgatagccatggcagtcaggatgagctaagggttttgcagaaagaaagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 map03460
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

332

Amino Acids

38.1

Weight (kDa)

5.39

Isoelectric Point (pI)

48.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000400)

Species Orthologous Gene IDs
malus_domestica MD05G1050700.v1.1 MD05G1050800.v1.1 MD08G1110700.v1.1 MD15G1090000.v1.1 MD15G1090100.v1.1 MD15G1090300.v1.1
prunus_persica Prupe.1G541300_v2.0.a1 Prupe.1G541300_v2.0.a1 Prupe.8G077100_v2.0.a1 Prupe.8G077200_v2.0.a1 Prupe.8G077500_v2.0.a1 Prupe.8G077600_v2.0.a1 Prupe.8G211300_v2.0.a1
pyrus_communis pycom05g04280 pycom08g09220 pycom15g08440
rosa_chinensis RchiOBHm_Chr1g0348461 RchiOBHm_Chr1g0348561 RchiOBHm_Chr6g0269201 RchiOBHm_Chr6g0269411 RchiOBHm_Chr6g0269421 RchiOBHm_Chr6g0269431 RchiOBHm_Chr7g0232901 RchiOBHm_Chr7g0232931 RchiOBHm_Chr7g0232961 RchiOBHm_Chr7g0232971
rosa_laevigata RLG00000001310
rosa_multiflora Rmu_sc0000091.1_g000001 Rmu_sc0000091.1_g000002 Rmu_sc0000091.1_g000008 Rmu_sc0000743.1_g000003 Rmu_sc0000743.1_g000004 Rmu_sc0005353.1_g000002 Rmu_sc0008668.1_g000002 Rmu_sc0015938.1_g000001 Rmu_ssc0000018.1_g000023 Rmu_ssc0000291.1_g000019 Rmu_ssc0000291.1_g000020 Rmu_ssc0000291.1_g000026 Rmu_ssc0000291.1_g000027
rosa_roxburghii Rroxscaffold_3G00227800 Rroxscaffold_3G00227820 Rroxscaffold_4G00306930 Rroxscaffold_4G00306950 Rroxscaffold_7G00198730
rosa_rugosa Rorug01G0194900 Rorug01G0194900 Rorug01G0195000 Rorug01G0195100 Rorug06G0045900 Rorug06G0046100 Rorug06G0047500 Rorug06G0047500 Rorug06G0047600 Rorug06G0047700 Rorug07G0276400 Rorug07G0276600 Rorug07G0276800.1 Rorug07G0276900
rosa_samantha Rh1AG213000 Rh1AG213100 Rh1BG179500 Rh1CG197300 Rh1CG197400 Rh1DG209600 Rh6AG166200 Rh6AG168000 Rh6AG168100 Rh6AG168200 Rh6BG171700 Rh6BG171800 Rh6BG173500 Rh6CG165300 Rh6CG167500 Rh6CG167600 Rh6DG156900 Rh6DG159400 Rh6DG159500 Rh6DG159600 Rh7AG431600 Rh7AG431700 Rh7AG431800 Rh7AG432100 Rh7AG432200 Rh7BG404700 Rh7BG404800 Rh7BG404900 Rh7BG405000 Rh7CG450600 Rh7CG450700 Rh7CG450800 Rh7CG451200 Rh7DG421300
rosa_wichuraiana Rw0G004710 Rw0G010410 Rw1G018020 Rw1G018040 Rw6G014350 Rw6G014450 Rw6G014470 Rw7G035660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 693
AciI CCGC 3 cut(s) 155, 871, 885
AclWI GGATC 1 cut(s) 259
AcsI RAATTY 2 cut(s) 189, 907
AcuI CTGAAG 1 cut(s) 710
AcyI GRCGYC 1 cut(s) 742
AflII CTTAAG 1 cut(s) 296
AgsI TTSAA 5 cut(s) 94, 137, 649, 719, 925
AjnI CCWGG 2 cut(s) 9, 507
AluBI AGCT 8 cut(s) 26, 182, 205, 218, 423, 503, 736, 973
AluI AGCT 8 cut(s) 26, 182, 205, 218, 423, 503, 736, 973
Alw26I GTCTC 4 cut(s) 113, 410, 640, 735
AlwI GGATC 1 cut(s) 259
Ama87I CYCGRG 2 cut(s) 146, 206
AoxI GGCC 1 cut(s) 380
ApeKI GCWGC 2 cut(s) 215, 748
ApoI RAATTY 2 cut(s) 189, 907
ArsI GACNNNNNNTTYG 2 cut(s) 459, 491
Asp700I GAANNNNTTC 1 cut(s) 723
AsuHPI GGTGA 1 cut(s) 497
AvaI CYCGRG 2 cut(s) 146, 206
BauI CACGAG 1 cut(s) 770
BbsI GAAGAC 2 cut(s) 486, 674
BbvCI CCTCAGC 1 cut(s) 228
BbvI GCAGC 2 cut(s) 227, 735
BccI CCATC 1 cut(s) 839
BciT130I CCWGG 2 cut(s) 11, 509
BciVI GTATCC 1 cut(s) 28
BcoDI GTCTC 4 cut(s) 113, 410, 640, 735
BfaI CTAG 2 cut(s) 270, 420
BfrI CTTAAG 1 cut(s) 296
BfuAI ACCTGC 1 cut(s) 693
BfuI GTATCC 1 cut(s) 28
BisI GCNGC 2 cut(s) 216, 749
BlsI GCNGC 2 cut(s) 217, 750
Bme1390I CCNGG 2 cut(s) 11, 509
BmeT110I CYCGRG 2 cut(s) 146, 206
BmrFI CCNGG 2 cut(s) 11, 509
BmrI ACTGGG 1 cut(s) 817
BmsI GCATC 8 cut(s) 62, 117, 142, 214, 312, 530, 805, 839
BmuI ACTGGG 1 cut(s) 817
BpiI GAAGAC 2 cut(s) 486, 674
BplI GAGNNNNNCTC 2 cut(s) 407, 439
BpmI CTGGAG 1 cut(s) 89
Bpu10I CCTNAGC 2 cut(s) 228, 974
BpuEI CTTGAG 1 cut(s) 483
BsaBI GATNNNNATC 1 cut(s) 520
BsaHI GRCGYC 1 cut(s) 742
BsaI GGTCTC 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 955
BsaXI ACNNNNNCTCC 2 cut(s) 886, 916
Bse1I ACTGG 1 cut(s) 812
Bse8I GATNNNNATC 1 cut(s) 520
BseBI CCWGG 2 cut(s) 11, 509
BseDI CCNNGG 1 cut(s) 955
BseGI GGATG 6 cut(s) 53, 157, 627, 784, 854, 973
BseJI GATNNNNATC 1 cut(s) 520
BseMII CTCAG 3 cut(s) 219, 723, 746
BseNI ACTGG 1 cut(s) 812
BseRI GAGGAG 1 cut(s) 953
BseXI GCAGC 2 cut(s) 227, 735
BseYI CCCAGC 1 cut(s) 22
BsgI GTGCAG 3 cut(s) 224, 721, 734
BshFI GGCC 1 cut(s) 382
BsiHKCI CYCGRG 2 cut(s) 146, 206
BslFI GGGAC 2 cut(s) 369, 824
BsmAI GTCTC 4 cut(s) 113, 410, 640, 735
BsmFI GGGAC 2 cut(s) 369, 824
BsnI GGCC 1 cut(s) 382
Bso31I GGTCTC 1 cut(s) 113
BsoBI CYCGRG 2 cut(s) 146, 206
Bsp143I GATC 6 cut(s) 36, 264, 292, 394, 401, 660
Bsp19I CCATGG 1 cut(s) 955
BspACI CCGC 3 cut(s) 155, 871, 885
BspANI GGCC 1 cut(s) 382
BspCNI CTCAG 3 cut(s) 220, 722, 745
BspHI TCATGA 2 cut(s) 663, 891
BspMI ACCTGC 1 cut(s) 693
BspPI GGATC 1 cut(s) 259
BspQI GCTCTTC 1 cut(s) 153
BspTI CTTAAG 1 cut(s) 296
BspTNI GGTCTC 1 cut(s) 113
BsrI ACTGG 1 cut(s) 812
BssECI CCNNGG 1 cut(s) 955
BssMI GATC 6 cut(s) 36, 264, 292, 394, 401, 660
BssNI GRCGYC 1 cut(s) 742
BssSI CACGAG 1 cut(s) 770
BssT1I CCWWGG 1 cut(s) 955
Bst2BI CACGAG 1 cut(s) 770
Bst2UI CCWGG 2 cut(s) 11, 509
Bst4CI ACNGT 2 cut(s) 346, 486
Bst6I CTCTTC 3 cut(s) 153, 448, 930
BstACI GRCGYC 1 cut(s) 742
BstAFI CTTAAG 1 cut(s) 296
BstDEI CTNAG 6 cut(s) 113, 228, 709, 732, 931, 974
BstDSI CCRYGG 1 cut(s) 955
BstF5I GGATG 6 cut(s) 53, 157, 627, 784, 854, 973
BstKTI GATC 6 cut(s) 39, 267, 295, 397, 404, 663
BstMAI GTCTC 4 cut(s) 113, 410, 640, 735
BstMBI GATC 6 cut(s) 36, 264, 292, 394, 401, 660
BstMWI GCNNNNNNNGC 3 cut(s) 224, 578, 748
BstNI CCWGG 2 cut(s) 11, 509
BstSCI CCNGG 2 cut(s) 9, 507
BstV1I GCAGC 2 cut(s) 227, 735
BstV2I GAAGAC 2 cut(s) 486, 674
BsuI GTATCC 1 cut(s) 28
BsuRI GGCC 1 cut(s) 382
BtgI CCRYGG 1 cut(s) 955
BtsCI GGATG 6 cut(s) 53, 157, 627, 784, 854, 973
BveI ACCTGC 1 cut(s) 693
CciI TCATGA 2 cut(s) 663, 891
CseI GACGC 1 cut(s) 731
CsiI ACCWGGT 1 cut(s) 9
CviAII CATG 3 cut(s) 664, 892, 956
DdeI CTNAG 6 cut(s) 113, 228, 709, 732, 931, 974
DpnI GATC 6 cut(s) 38, 266, 294, 396, 403, 662
DpnII GATC 6 cut(s) 36, 264, 292, 394, 401, 660
Eam1104I CTCTTC 3 cut(s) 153, 448, 930
EarI CTCTTC 3 cut(s) 153, 448, 930
Eco130I CCWWGG 1 cut(s) 955
Eco147I AGGCCT 1 cut(s) 382
Eco31I GGTCTC 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 710
Eco88I CYCGRG 2 cut(s) 146, 206
EcoRII CCWGG 2 cut(s) 9, 507
EcoT14I CCWWGG 1 cut(s) 955
EcoT22I ATGCAT 1 cut(s) 523
ErhI CCWWGG 1 cut(s) 955
FaeI CATG 3 cut(s) 667, 895, 959
FalI AAGNNNNNCTT 2 cut(s) 309, 341
FaqI GGGAC 2 cut(s) 369, 824
FatI CATG 3 cut(s) 663, 891, 955
FauI CCCGC 1 cut(s) 878
Fnu4HI GCNGC 2 cut(s) 216, 749
FokI GGATG 6 cut(s) 40, 164, 634, 791, 861, 980
Fsp4HI GCNGC 2 cut(s) 216, 749
FspBI CTAG 2 cut(s) 270, 420
GluI GCNGC 2 cut(s) 216, 749
GsaI CCCAGC 1 cut(s) 26
GsuI CTGGAG 1 cut(s) 89
HaeIII GGCC 1 cut(s) 382
HgaI GACGC 1 cut(s) 731
Hin1I GRCGYC 1 cut(s) 742
Hin1II CATG 3 cut(s) 667, 895, 959
HinfI GANTC 3 cut(s) 133, 680, 899
HphI GGTGA 1 cut(s) 497
Hpy166II GTNNAC 1 cut(s) 369
Hpy188I TCNGA 2 cut(s) 640, 712
Hpy188III TCNNGA 8 cut(s) 106, 146, 208, 478, 655, 664, 892, 965
Hpy8I GTNNAC 1 cut(s) 369
Hpy99I CGWCG 1 cut(s) 402
HpyAV CCTTC 4 cut(s) 205, 506, 776, 919
HpyCH4III ACNGT 2 cut(s) 346, 486
HpyCH4V TGCA 7 cut(s) 31, 241, 521, 702, 751, 852, 985
HpyF10VI GCNNNNNNNGC 3 cut(s) 224, 578, 748
HpyF3I CTNAG 6 cut(s) 113, 228, 709, 732, 931, 974
Hsp92I GRCGYC 1 cut(s) 742
Hsp92II CATG 3 cut(s) 667, 895, 959
Kzo9I GATC 6 cut(s) 36, 264, 292, 394, 401, 660
LguI GCTCTTC 1 cut(s) 153
Lsp1109I GCAGC 2 cut(s) 227, 735
LweI GCATC 8 cut(s) 62, 117, 142, 214, 312, 530, 805, 839
MabI ACCWGGT 1 cut(s) 9
MaeI CTAG 2 cut(s) 270, 420
MaeIII GTNAC 3 cut(s) 438, 685, 862
MalI GATC 6 cut(s) 38, 266, 294, 396, 403, 662
MboI GATC 6 cut(s) 36, 264, 292, 394, 401, 660
MboII GAAGA 8 cut(s) 170, 396, 465, 486, 670, 679, 716, 947
MluCI AATT 6 cut(s) 167, 189, 552, 575, 672, 907
MlyI GAGTC 2 cut(s) 689, 893
MmeI TCCRAC 2 cut(s) 198, 756
Mph1103I ATGCAT 1 cut(s) 523
MroXI GAANNNNTTC 1 cut(s) 723
MseI TTAA 3 cut(s) 297, 315, 363
MspCI CTTAAG 1 cut(s) 296
MspR9I CCNGG 2 cut(s) 11, 509
MvaI CCWGG 2 cut(s) 11, 509
MwoI GCNNNNNNNGC 3 cut(s) 224, 578, 748
NcoI CCATGG 1 cut(s) 955
NdeII GATC 6 cut(s) 36, 264, 292, 394, 401, 660
NlaIII CATG 3 cut(s) 667, 895, 959
NmuCI GTSAC 1 cut(s) 438
NsiI ATGCAT 1 cut(s) 523
PaeR7I CTCGAG 2 cut(s) 146, 206
PagI TCATGA 2 cut(s) 663, 891
PceI AGGCCT 1 cut(s) 382
PciSI GCTCTTC 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 723
PfeI GAWTC 1 cut(s) 133
PflFI GACNNNGTC 1 cut(s) 11
PkrI GCNGC 2 cut(s) 217, 750
PleI GAGTC 2 cut(s) 688, 893
PpsI GAGTC 2 cut(s) 688, 893
Psp6I CCWGG 2 cut(s) 9, 507
PspFI CCCAGC 1 cut(s) 22
PspGI CCWGG 2 cut(s) 9, 507
PsyI GACNNNGTC 1 cut(s) 11
SapI GCTCTTC 1 cut(s) 153
SaqAI TTAA 3 cut(s) 297, 315, 363
SatI GCNGC 2 cut(s) 216, 749
Sau3AI GATC 6 cut(s) 36, 264, 292, 394, 401, 660
SchI GAGTC 2 cut(s) 689, 893
ScrFI CCNGG 2 cut(s) 11, 509
SexAI ACCWGGT 1 cut(s) 9
SfaNI GCATC 8 cut(s) 62, 117, 142, 214, 312, 530, 805, 839
Sfr274I CTCGAG 2 cut(s) 146, 206
SlaI CTCGAG 2 cut(s) 146, 206
SmlI CTYRAG 4 cut(s) 146, 206, 296, 498
SmoI CTYRAG 4 cut(s) 146, 206, 296, 498
Sse9I AATT 6 cut(s) 167, 189, 552, 575, 672, 907
SseBI AGGCCT 1 cut(s) 382
SsiI CCGC 3 cut(s) 155, 871, 885
SspMI CTAG 2 cut(s) 270, 420
StuI AGGCCT 1 cut(s) 382
StyD4I CCNGG 2 cut(s) 9, 507
StyI CCWWGG 1 cut(s) 955
TaaI ACNGT 2 cut(s) 346, 486
TaqI TCGA 5 cut(s) 147, 207, 400, 612, 678
TasI AATT 6 cut(s) 167, 189, 552, 575, 672, 907
TfiI GAWTC 1 cut(s) 133
Tru1I TTAA 3 cut(s) 297, 315, 363
Tru9I TTAA 3 cut(s) 297, 315, 363
TseFI GTSAC 1 cut(s) 438
TseI GCWGC 2 cut(s) 215, 748
Tsp45I GTSAC 1 cut(s) 438
TspDTI ATGAA 1 cut(s) 680
TspGWI ACGGA 2 cut(s) 249, 397
Tth111I GACNNNGTC 1 cut(s) 11
Vha464I CTTAAG 1 cut(s) 296
XapI RAATTY 2 cut(s) 189, 907
XhoI CTCGAG 2 cut(s) 146, 206
XmnI GAANNNNTTC 1 cut(s) 723
XspI CTAG 2 cut(s) 270, 420
Zsp2I ATGCAT 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.