Rh7AG431600

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Reverse (-)
58069098 .. 58070375
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG431600.1

Sequence Viewer

Length: 1278 bp
ATGCAGAACTATCTTTTATCATATTATCAATCAAAATTGAGAGTTTTCTCTTTTATCTCTGGTGGACTCCAGAATCTTTGTTTTAGGTTTATTGCTTGTAAACCTAGGGTTACTTCCGCCCGCGTCAGATGTGAAAGTCTTCCTCCACTCGGTCAACTTCCTGTCCTCAAGATCCTCAACATCCAAGGAATGGATTCTGTTGTGCACATTGGTGTCGAATTCTCAGGTGAAGGAGACAGACCATTTAGTTCTCTTAAAGAGCTATCCCTCATAGACTTTCCAGAATTAAGAACTTGGAGTAGTATCAATTCCACAGAAGTGTTTACTTGTCTGAAAAAACTTGTTATCACAAATTGTCCTTTTTTGACAACCATGCCATGGTTTCCATATCTCCAAGACTTGAAGCTGAGGAAGTGCGTGCAGCGTGACCAAATGGTAGTATGGTCAGCATCAGAGCTTACTACACTCTCTACTCTTGTCATTGACTCCTTTCCACTGATGAGTTTTCTACCAAAAAAATTGCTGCAAAACAATTCAGATCTGATATCATTAACTGTTACTTCCTGCCCCAAGATTAGCTCACTACCTGAAAATCTGGGAATCCTCACTGCTCTGAAATCGCTGAAAATTGGATGGTGTGACGGGTTAGAGACTTTGCCAAGTGGACTAAAGTACCTCACTTCACTGGAGAACTTGGAAATCGTTGAATGTCCTAGTATAATCTGTTTGCCAGAGGAAGGCATGGAAGGCTTGTGCTCACTTCGGTCATTTTCAATTGAGAACTGTCCGAGCTTAACATCTTTGCCTATGGGTATGAAATACCTCACATCTCTTGAGAACCTCACGGTTATGTTTTTAAATCTGGTTCATCTGCCAGAGACTTTTCAATACCTCTTGGCACTTAGAAGCCTGACAATTATAGGCTGTCCAGAGCTTATAAGTCTGCCGGTGGGACTGCAACATGTCCAGAATTTACAAATCTTGGAAATCCATAGCTGCCCAAAACTAATGGAATTGCCAGAGTGGGTGGAGCATCTTGTTTCACTTCGATCTTTGAAAATCTCAGACTGCACAAAAATAGAGTTCTTGCCAAAAGGTCTACAATGTCTTGGTGGGCTCCCACACCTGTCCATAAGAGACTGTCCTGTCCTTGAGAAGTGCTGCGAGAGCGAAACTGGTGAGGACTGGCAGAAGATATCTCATATTCTATATAAACATGTTGGATCATCAGCAGTGCAGCACAGGCAAGATATTGCATCCCCCTCACAGAATCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

425

Amino Acids

47.63

Weight (kDa)

6.17

Isoelectric Point (pI)

56.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 123 - 256 2.8e-06 Leucine-rich repeat region
LRR_RPS2 PF23247 159 - 283 2.8e-06 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_14 PF23598 248 - 376 1.1e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000400)

Species Orthologous Gene IDs
malus_domestica MD05G1050700.v1.1 MD05G1050800.v1.1 MD08G1110700.v1.1 MD15G1090000.v1.1 MD15G1090100.v1.1 MD15G1090300.v1.1
prunus_persica Prupe.1G541300_v2.0.a1 Prupe.1G541300_v2.0.a1 Prupe.8G077100_v2.0.a1 Prupe.8G077200_v2.0.a1 Prupe.8G077500_v2.0.a1 Prupe.8G077600_v2.0.a1 Prupe.8G211300_v2.0.a1
pyrus_communis pycom05g04280 pycom08g09220 pycom15g08440
rosa_chinensis RchiOBHm_Chr1g0348461 RchiOBHm_Chr1g0348561 RchiOBHm_Chr6g0269201 RchiOBHm_Chr6g0269411 RchiOBHm_Chr6g0269421 RchiOBHm_Chr6g0269431 RchiOBHm_Chr7g0232901 RchiOBHm_Chr7g0232931 RchiOBHm_Chr7g0232961 RchiOBHm_Chr7g0232971
rosa_laevigata RLG00000001310
rosa_multiflora Rmu_sc0000091.1_g000001 Rmu_sc0000091.1_g000002 Rmu_sc0000091.1_g000008 Rmu_sc0000743.1_g000003 Rmu_sc0000743.1_g000004 Rmu_sc0005353.1_g000002 Rmu_sc0008668.1_g000002 Rmu_sc0015938.1_g000001 Rmu_ssc0000018.1_g000023 Rmu_ssc0000291.1_g000019 Rmu_ssc0000291.1_g000020 Rmu_ssc0000291.1_g000026 Rmu_ssc0000291.1_g000027
rosa_roxburghii Rroxscaffold_3G00227800 Rroxscaffold_3G00227820 Rroxscaffold_4G00306930 Rroxscaffold_4G00306950 Rroxscaffold_7G00198730
rosa_rugosa Rorug01G0194900 Rorug01G0194900 Rorug01G0195000 Rorug01G0195100 Rorug06G0045900 Rorug06G0046100 Rorug06G0047500 Rorug06G0047500 Rorug06G0047600 Rorug06G0047700 Rorug07G0276400 Rorug07G0276600 Rorug07G0276800.1 Rorug07G0276900
rosa_samantha Rh1AG213000 Rh1AG213100 Rh1BG179500 Rh1CG197300 Rh1CG197400 Rh1DG209600 Rh6AG166200 Rh6AG168000 Rh6AG168100 Rh6AG168200 Rh6BG171700 Rh6BG171800 Rh6BG173500 Rh6CG165300 Rh6CG167500 Rh6CG167600 Rh6DG156900 Rh6DG159400 Rh6DG159500 Rh6DG159600 Rh7AG431600 Rh7AG431700 Rh7AG431800 Rh7AG432100 Rh7AG432200 Rh7BG404700 Rh7BG404800 Rh7BG404900 Rh7BG405000 Rh7CG450600 Rh7CG450700 Rh7CG450800 Rh7CG451200 Rh7DG421300
rosa_wichuraiana Rw0G004710 Rw0G010410 Rw1G018020 Rw1G018040 Rw6G014350 Rw6G014450 Rw6G014470 Rw7G035660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 938
AasI GACNNNNNNGTC 1 cut(s) 1145
AccB7I CCANNNNNTGG 2 cut(s) 190, 378
AccI GTMKAC 1 cut(s) 1099
AccII CGCG 1 cut(s) 123
AciI CCGC 2 cut(s) 117, 121
AclWI GGATC 2 cut(s) 166, 1231
AcsI RAATTY 2 cut(s) 218, 970
AfaI GTAC 1 cut(s) 674
AfiI CCNNNNNNNGG 4 cut(s) 149, 190, 378, 737
AflIII ACRYGT 2 cut(s) 961, 1216
AgsI TTSAA 5 cut(s) 403, 707, 774, 887, 1057
AleI CACNNNNGTG 2 cut(s) 210, 317
AluBI AGCT 7 cut(s) 262, 406, 457, 579, 792, 934, 996
AluI AGCT 7 cut(s) 262, 406, 457, 579, 792, 934, 996
Alw21I GWGCWC 2 cut(s) 207, 758
Alw26I GTCTC 4 cut(s) 228, 644, 872, 1131
Alw44I GTGCAC 1 cut(s) 203
AlwI GGATC 2 cut(s) 166, 1231
ApaLI GTGCAC 1 cut(s) 203
ApeKI GCWGC 5 cut(s) 421, 523, 996, 1161, 1237
ApoI RAATTY 2 cut(s) 218, 970
Asp700I GAANNNNTTC 2 cut(s) 138, 193
AspA2I CCTAGG 1 cut(s) 104
AsuHPI GGTGA 2 cut(s) 239, 1190
AvrII CCTAGG 1 cut(s) 104
BaeGI GKGCMC 1 cut(s) 207
BaeI ACNNNNGTAYC 2 cut(s) 656, 689
BanII GRGCYC 1 cut(s) 1119
BbsI GAAGAC 1 cut(s) 131
Bbv12I GWGCWC 2 cut(s) 207, 758
BbvCI CCTCAGC 1 cut(s) 407
BbvI GCAGC 5 cut(s) 433, 510, 983, 1148, 1249
BccI CCATC 1 cut(s) 627
BcoDI GTCTC 4 cut(s) 228, 644, 872, 1131
BfaI CTAG 2 cut(s) 105, 714
BglII AGATCT 1 cut(s) 538
BisI GCNGC 5 cut(s) 422, 524, 997, 1162, 1238
BlnI CCTAGG 1 cut(s) 104
BlsI GCNGC 5 cut(s) 423, 525, 998, 1163, 1239
BmiI GGNNCC 1 cut(s) 1118
BmsI GCATC 3 cut(s) 458, 1042, 1265
BpiI GAAGAC 1 cut(s) 131
BpmI CTGGAG 2 cut(s) 53, 707
Bpu10I CCTNAGC 1 cut(s) 407
BpuEI CTTGAG 3 cut(s) 152, 854, 1172
BsaJI CCNNGG 3 cut(s) 104, 184, 377
Bsc4I CCNNNNNNNGG 4 cut(s) 149, 190, 378, 737
Bse118I RCCGGY 1 cut(s) 946
Bse1I ACTGG 3 cut(s) 690, 1180, 1190
BseDI CCNNGG 3 cut(s) 104, 184, 377
BseGI GGATG 3 cut(s) 180, 638, 1256
BseLI CCNNNNNNNGG 4 cut(s) 149, 190, 378, 737
BseMII CTCAG 3 cut(s) 237, 398, 1077
BseNI ACTGG 3 cut(s) 690, 1180, 1190
BseSI GKGCMC 1 cut(s) 207
BseXI GCAGC 5 cut(s) 433, 510, 983, 1148, 1249
BsgI GTGCAG 3 cut(s) 440, 1054, 1256
Bsh1236I CGCG 1 cut(s) 123
BsiHKAI GWGCWC 2 cut(s) 207, 758
BsiSI CCGG 1 cut(s) 947
BslFI GGGAC 1 cut(s) 966
BslI CCNNNNNNNGG 4 cut(s) 149, 190, 378, 737
BsmAI GTCTC 4 cut(s) 228, 644, 872, 1131
BsmFI GGGAC 1 cut(s) 966
Bsp1286I GDGCHC 3 cut(s) 207, 758, 1119
Bsp143I GATC 4 cut(s) 171, 538, 1049, 1223
Bsp19I CCATGG 1 cut(s) 377
BspACI CCGC 2 cut(s) 117, 121
BspCNI CTCAG 3 cut(s) 236, 399, 1076
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 1118
BspPI GGATC 2 cut(s) 166, 1231
BsrFI RCCGGY 1 cut(s) 946
BsrI ACTGG 3 cut(s) 690, 1180, 1190
BssAI RCCGGY 1 cut(s) 946
BssECI CCNNGG 3 cut(s) 104, 184, 377
BssMI GATC 4 cut(s) 171, 538, 1049, 1223
BssT1I CCWWGG 3 cut(s) 104, 184, 377
Bst4CI ACNGT 4 cut(s) 556, 785, 847, 1142
BstC8I GCNNGC 2 cut(s) 121, 419
BstDEI CTNAG 5 cut(s) 223, 407, 902, 1063, 1275
BstDSI CCRYGG 1 cut(s) 377
BstF5I GGATG 3 cut(s) 180, 638, 1256
BstFNI CGCG 1 cut(s) 123
BstKTI GATC 4 cut(s) 174, 541, 1052, 1226
BstMAI GTCTC 4 cut(s) 228, 644, 872, 1131
BstMBI GATC 4 cut(s) 171, 538, 1049, 1223
BstMWI GCNNNNNNNGC 3 cut(s) 747, 1167, 1243
BstNSI RCATGY 2 cut(s) 965, 1220
BstSLI GKGCMC 1 cut(s) 207
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 5 cut(s) 433, 510, 983, 1148, 1249
BstV2I GAAGAC 1 cut(s) 131
BstX2I RGATCY 2 cut(s) 171, 538
BstYI RGATCY 2 cut(s) 171, 538
BtgI CCRYGG 1 cut(s) 377
BtsCI GGATG 3 cut(s) 180, 638, 1256
BtsI GCAGTG 2 cut(s) 606, 1239
BtsIMutI CAGTG 4 cut(s) 494, 606, 683, 1239
Cac8I GCNNGC 2 cut(s) 121, 419
Cfr10I RCCGGY 1 cut(s) 946
CseI GACGC 1 cut(s) 112
Csp6I GTAC 1 cut(s) 673
CviAII CATG 5 cut(s) 373, 378, 742, 962, 1217
CviQI GTAC 1 cut(s) 673
DdeI CTNAG 5 cut(s) 223, 407, 902, 1063, 1275
DpnI GATC 4 cut(s) 173, 540, 1051, 1225
DpnII GATC 4 cut(s) 171, 538, 1049, 1223
DraI TTTAAA 1 cut(s) 858
DrdI GACNNNNNNGTC 1 cut(s) 1145
DseDI GACNNNNNNGTC 1 cut(s) 1145
EciI GGCGGA 1 cut(s) 106
Eco130I CCWWGG 3 cut(s) 104, 184, 377
Eco24I GRGCYC 1 cut(s) 1119
Eco32I GATATC 2 cut(s) 546, 1197
EcoRI GAATTC 1 cut(s) 218
EcoRV GATATC 2 cut(s) 546, 1197
EcoT14I CCWWGG 3 cut(s) 104, 184, 377
EcoT38I GRGCYC 1 cut(s) 1119
ErhI CCWWGG 3 cut(s) 104, 184, 377
FaeI CATG 5 cut(s) 376, 381, 745, 965, 1220
FaqI GGGAC 1 cut(s) 966
FatI CATG 5 cut(s) 372, 377, 741, 961, 1216
FauI CCCGC 1 cut(s) 128
FblI GTMKAC 1 cut(s) 1099
Fnu4HI GCNGC 5 cut(s) 422, 524, 997, 1162, 1238
FokI GGATG 3 cut(s) 167, 645, 1243
FriOI GRGCYC 1 cut(s) 1119
Fsp4HI GCNGC 5 cut(s) 422, 524, 997, 1162, 1238
FspBI CTAG 2 cut(s) 105, 714
GluI GCNGC 5 cut(s) 422, 524, 997, 1162, 1238
GsuI CTGGAG 2 cut(s) 53, 707
HapII CCGG 1 cut(s) 947
HgaI GACGC 1 cut(s) 112
Hin1II CATG 5 cut(s) 376, 381, 745, 965, 1220
HincII GTYRAC 1 cut(s) 155
HindII GTYRAC 1 cut(s) 155
HinfI GANTC 6 cut(s) 66, 73, 194, 485, 600, 1270
HpaII CCGG 1 cut(s) 947
HphI GGTGA 2 cut(s) 239, 1190
Hpy166II GTNNAC 7 cut(s) 65, 101, 155, 205, 324, 665, 1100
Hpy188I TCNGA 8 cut(s) 128, 333, 454, 538, 543, 615, 789, 1066
Hpy188III TCNNGA 6 cut(s) 70, 169, 281, 833, 929, 967
Hpy8I GTNNAC 7 cut(s) 65, 101, 155, 205, 324, 665, 1100
HpyAV CCTTC 3 cut(s) 224, 731, 740
HpyCH4III ACNGT 4 cut(s) 556, 785, 847, 1142
HpyCH4V TGCA 8 cut(s) 4, 205, 421, 526, 958, 1071, 1237, 1256
HpyF10VI GCNNNNNNNGC 3 cut(s) 747, 1167, 1243
HpyF3I CTNAG 5 cut(s) 223, 407, 902, 1063, 1275
Hsp92II CATG 5 cut(s) 376, 381, 745, 965, 1220
Kzo9I GATC 4 cut(s) 171, 538, 1049, 1223
LmnI GCTCC 2 cut(s) 1030, 1122
Lsp1109I GCAGC 5 cut(s) 433, 510, 983, 1148, 1249
LweI GCATC 3 cut(s) 458, 1042, 1265
MaeI CTAG 2 cut(s) 105, 714
MaeIII GTNAC 4 cut(s) 109, 425, 556, 638
MalI GATC 4 cut(s) 173, 540, 1051, 1225
MboI GATC 4 cut(s) 171, 538, 1049, 1223
MboII GAAGA 2 cut(s) 131, 1204
MfeI CAATTG 1 cut(s) 774
MflI RGATCY 2 cut(s) 171, 538
MhlI GDGCHC 3 cut(s) 207, 758, 1119
MlyI GAGTC 2 cut(s) 60, 479
MmeI TCCRAC 1 cut(s) 1201
MroXI GAANNNNTTC 2 cut(s) 138, 193
MseI TTAA 5 cut(s) 255, 287, 551, 794, 857
MslI CAYNNNNRTG 3 cut(s) 210, 317, 848
MspI CCGG 1 cut(s) 947
MunI CAATTG 1 cut(s) 774
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 3 cut(s) 747, 1167, 1243
NcoI CCATGG 1 cut(s) 377
NdeII GATC 4 cut(s) 171, 538, 1049, 1223
NlaIII CATG 5 cut(s) 376, 381, 745, 965, 1220
NlaIV GGNNCC 1 cut(s) 1118
NmuCI GTSAC 2 cut(s) 425, 638
NspI RCATGY 2 cut(s) 965, 1220
OliI CACNNNNGTG 2 cut(s) 210, 317
PciI ACATGT 2 cut(s) 961, 1216
PdmI GAANNNNTTC 2 cut(s) 138, 193
PfeI GAWTC 4 cut(s) 73, 194, 600, 1270
PflMI CCANNNNNTGG 2 cut(s) 190, 378
PkrI GCNGC 5 cut(s) 423, 525, 998, 1163, 1239
PleI GAGTC 2 cut(s) 60, 479
PpsI GAGTC 2 cut(s) 60, 479
PscI ACATGT 2 cut(s) 961, 1216
PsiI TTATAA 1 cut(s) 938
PspN4I GGNNCC 1 cut(s) 1118
PsuI RGATCY 2 cut(s) 171, 538
RsaI GTAC 1 cut(s) 674
RsaNI GTAC 1 cut(s) 673
RseI CAYNNNNRTG 3 cut(s) 210, 317, 848
SaqAI TTAA 5 cut(s) 255, 287, 551, 794, 857
SatI GCNGC 5 cut(s) 422, 524, 997, 1162, 1238
Sau3AI GATC 4 cut(s) 171, 538, 1049, 1223
SchI GAGTC 2 cut(s) 60, 479
SduI GDGCHC 3 cut(s) 207, 758, 1119
SfaNI GCATC 3 cut(s) 458, 1042, 1265
SmiMI CAYNNNNRTG 3 cut(s) 210, 317, 848
SmlI CTYRAG 3 cut(s) 167, 833, 1151
SmoI CTYRAG 3 cut(s) 167, 833, 1151
SsiI CCGC 2 cut(s) 117, 121
SspMI CTAG 2 cut(s) 105, 714
StyI CCWWGG 3 cut(s) 104, 184, 377
TaaI ACNGT 4 cut(s) 556, 785, 847, 1142
TaqI TCGA 2 cut(s) 216, 1048
TaqII GACCGA 2 cut(s) 140, 753
TfiI GAWTC 4 cut(s) 73, 194, 600, 1270
Tru1I TTAA 5 cut(s) 255, 287, 551, 794, 857
Tru9I TTAA 5 cut(s) 255, 287, 551, 794, 857
TscAI CASTG 4 cut(s) 501, 613, 690, 1239
TseFI GTSAC 2 cut(s) 425, 638
TseI GCWGC 5 cut(s) 421, 523, 996, 1161, 1237
Tsp45I GTSAC 2 cut(s) 425, 638
TspDTI ATGAA 2 cut(s) 830, 857
TspRI CASTG 4 cut(s) 501, 613, 690, 1239
Van91I CCANNNNNTGG 2 cut(s) 190, 378
VneI GTGCAC 1 cut(s) 203
XapI RAATTY 2 cut(s) 218, 970
XceI RCATGY 2 cut(s) 965, 1220
XmaJI CCTAGG 1 cut(s) 104
XmiI GTMKAC 1 cut(s) 1099
XmnI GAANNNNTTC 2 cut(s) 138, 193
XspI CTAG 2 cut(s) 105, 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.