Rh6AG168000

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000400
Physical Location & Seq
Forward (+)
26864663 .. 26873430
8768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG168000.1

Sequence Viewer

Length: 342 bp
ATGGCAGACCTGGTCTTATCCCCAGCTTTGCAAGTGATCTTTGACAGAATAGCATCCCCTGTCTTAGAAAAGATTGCTGACATGTGGGATCTCAAGGACAACCTCCAGAGCCTAAGAGAGACCTTGATGCTGATTCAACCTACTCTCGAGGATGCTGAAGAGCAACAATTCTCCAACAAAGCTGTCAAAATTTGGCTGTCAAAGCTTGAGAAGGCAGCTTATGATGCTGAGGACGGACTGCAATACATGACTGCTGGAGGGAACACAACCATGATACTTGAAAATGGTCTCCAACCAAAGAATTTAGAAAAACTTCGCCACTCCTCTGTTGTTTATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.71

Weight (kDa)

4.66

Isoelectric Point (pI)

57.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 6 - 80 2e-18 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000400)

Species Orthologous Gene IDs
malus_domestica MD05G1050700.v1.1 MD05G1050800.v1.1 MD08G1110700.v1.1 MD15G1090000.v1.1 MD15G1090100.v1.1 MD15G1090300.v1.1
prunus_persica Prupe.1G541300_v2.0.a1 Prupe.1G541300_v2.0.a1 Prupe.8G077100_v2.0.a1 Prupe.8G077200_v2.0.a1 Prupe.8G077500_v2.0.a1 Prupe.8G077600_v2.0.a1 Prupe.8G211300_v2.0.a1
pyrus_communis pycom05g04280 pycom08g09220 pycom15g08440
rosa_chinensis RchiOBHm_Chr1g0348461 RchiOBHm_Chr1g0348561 RchiOBHm_Chr6g0269201 RchiOBHm_Chr6g0269411 RchiOBHm_Chr6g0269421 RchiOBHm_Chr6g0269431 RchiOBHm_Chr7g0232901 RchiOBHm_Chr7g0232931 RchiOBHm_Chr7g0232961 RchiOBHm_Chr7g0232971
rosa_laevigata RLG00000001310
rosa_multiflora Rmu_sc0000091.1_g000001 Rmu_sc0000091.1_g000002 Rmu_sc0000091.1_g000008 Rmu_sc0000743.1_g000003 Rmu_sc0000743.1_g000004 Rmu_sc0005353.1_g000002 Rmu_sc0008668.1_g000002 Rmu_sc0015938.1_g000001 Rmu_ssc0000018.1_g000023 Rmu_ssc0000291.1_g000019 Rmu_ssc0000291.1_g000020 Rmu_ssc0000291.1_g000026 Rmu_ssc0000291.1_g000027
rosa_roxburghii Rroxscaffold_3G00227800 Rroxscaffold_3G00227820 Rroxscaffold_4G00306930 Rroxscaffold_4G00306950 Rroxscaffold_7G00198730
rosa_rugosa Rorug01G0194900 Rorug01G0194900 Rorug01G0195000 Rorug01G0195100 Rorug06G0045900 Rorug06G0046100 Rorug06G0047500 Rorug06G0047500 Rorug06G0047600 Rorug06G0047700 Rorug07G0276400 Rorug07G0276600 Rorug07G0276800.1 Rorug07G0276900
rosa_samantha Rh1AG213000 Rh1AG213100 Rh1BG179500 Rh1CG197300 Rh1CG197400 Rh1DG209600 Rh6AG166200 Rh6AG168000 Rh6AG168100 Rh6AG168200 Rh6BG171700 Rh6BG171800 Rh6BG173500 Rh6CG165300 Rh6CG167500 Rh6CG167600 Rh6DG156900 Rh6DG159400 Rh6DG159500 Rh6DG159600 Rh7AG431600 Rh7AG431700 Rh7AG431800 Rh7AG432100 Rh7AG432200 Rh7BG404700 Rh7BG404800 Rh7BG404900 Rh7BG405000 Rh7CG450600 Rh7CG450700 Rh7CG450800 Rh7CG451200 Rh7DG421300
rosa_wichuraiana Rw0G004710 Rw0G010410 Rw1G018020 Rw1G018040 Rw6G014350 Rw6G014450 Rw6G014470 Rw7G035660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 96
AcsI RAATTY 2 cut(s) 189, 301
AcuI CTGAAG 1 cut(s) 177
AflIII ACRYGT 1 cut(s) 81
AgsI TTSAA 2 cut(s) 137, 281
AjnI CCWGG 1 cut(s) 9
AluBI AGCT 4 cut(s) 26, 182, 205, 218
AluI AGCT 4 cut(s) 26, 182, 205, 218
Alw26I GTCTC 2 cut(s) 113, 293
AlwI GGATC 1 cut(s) 96
Ama87I CYCGRG 1 cut(s) 146
ApeKI GCWGC 1 cut(s) 215
ApoI RAATTY 2 cut(s) 189, 301
Asp700I GAANNNNTTC 1 cut(s) 312
AvaI CYCGRG 1 cut(s) 146
BbvCI CCTCAGC 1 cut(s) 228
BbvI GCAGC 1 cut(s) 227
BciT130I CCWGG 1 cut(s) 11
BcoDI GTCTC 2 cut(s) 113, 293
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
Bme1390I CCNGG 1 cut(s) 11
BmeT110I CYCGRG 1 cut(s) 146
BmrFI CCNGG 1 cut(s) 11
BmsI GCATC 4 cut(s) 62, 117, 142, 214
BpmI CTGGAG 2 cut(s) 89, 276
Bpu10I CCTNAGC 1 cut(s) 228
BpuEI CTTGAG 2 cut(s) 77, 227
BsaI GGTCTC 2 cut(s) 113, 293
BseBI CCWGG 1 cut(s) 11
BseGI GGATG 2 cut(s) 53, 157
BseMII CTCAG 1 cut(s) 219
BseRI GAGGAG 1 cut(s) 313
BseXI GCAGC 1 cut(s) 227
BseYI CCCAGC 1 cut(s) 22
BsiHKCI CYCGRG 1 cut(s) 146
BsmAI GTCTC 2 cut(s) 113, 293
Bso31I GGTCTC 2 cut(s) 113, 293
BsoBI CYCGRG 1 cut(s) 146
Bsp143I GATC 2 cut(s) 36, 88
BspCNI CTCAG 1 cut(s) 220
BspPI GGATC 1 cut(s) 96
BspQI GCTCTTC 1 cut(s) 153
BspTNI GGTCTC 2 cut(s) 113, 293
BssMI GATC 2 cut(s) 36, 88
Bst2UI CCWGG 1 cut(s) 11
Bst6I CTCTTC 1 cut(s) 153
BstDEI CTNAG 3 cut(s) 64, 113, 228
BstF5I GGATG 2 cut(s) 53, 157
BstKTI GATC 2 cut(s) 39, 91
BstMAI GTCTC 2 cut(s) 113, 293
BstMBI GATC 2 cut(s) 36, 88
BstMWI GCNNNNNNNGC 2 cut(s) 202, 224
BstNI CCWGG 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 227
BstX2I RGATCY 1 cut(s) 88
BstYI RGATCY 1 cut(s) 88
BtsCI GGATG 2 cut(s) 53, 157
CsiI ACCWGGT 1 cut(s) 9
CviAII CATG 3 cut(s) 82, 247, 271
CviJI RGCY 6 cut(s) 26, 111, 182, 196, 205, 218
CviKI_1 RGCY 6 cut(s) 26, 111, 182, 196, 205, 218
DdeI CTNAG 3 cut(s) 64, 113, 228
DpnI GATC 2 cut(s) 38, 90
DpnII GATC 2 cut(s) 36, 88
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco31I GGTCTC 2 cut(s) 113, 293
Eco57I CTGAAG 1 cut(s) 177
Eco88I CYCGRG 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 9
FaeI CATG 3 cut(s) 85, 250, 274
FaiI YATR 5 cut(s) 83, 222, 248, 272, 336
FatI CATG 3 cut(s) 81, 246, 270
Fnu4HI GCNGC 1 cut(s) 216
FokI GGATG 2 cut(s) 40, 164
Fsp4HI GCNGC 1 cut(s) 216
GluI GCNGC 1 cut(s) 216
GsaI CCCAGC 1 cut(s) 26
GsuI CTGGAG 2 cut(s) 89, 276
Hin1II CATG 3 cut(s) 85, 250, 274
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 1 cut(s) 133
Hpy188III TCNNGA 2 cut(s) 106, 146
HpyAV CCTTC 1 cut(s) 205
HpyCH4V TGCA 2 cut(s) 31, 241
HpyF10VI GCNNNNNNNGC 2 cut(s) 202, 224
HpyF3I CTNAG 3 cut(s) 64, 113, 228
Hsp92II CATG 3 cut(s) 85, 250, 274
Kzo9I GATC 2 cut(s) 36, 88
LguI GCTCTTC 1 cut(s) 153
LpnPI CCDG 5 cut(s) 23, 36, 72, 119, 240
Lsp1109I GCAGC 1 cut(s) 227
LweI GCATC 4 cut(s) 62, 117, 142, 214
MabI ACCWGGT 1 cut(s) 9
MalI GATC 2 cut(s) 38, 90
MboI GATC 2 cut(s) 36, 88
MboII GAAGA 1 cut(s) 170
MflI RGATCY 1 cut(s) 88
MluCI AATT 3 cut(s) 167, 189, 301
MmeI TCCRAC 2 cut(s) 198, 316
MnlI CCTC 5 cut(s) 113, 142, 223, 251, 334
MroXI GAANNNNTTC 1 cut(s) 312
MslI CAYNNNNRTG 1 cut(s) 269
MspR9I CCNGG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 11
MwoI GCNNNNNNNGC 2 cut(s) 202, 224
NdeII GATC 2 cut(s) 36, 88
NlaIII CATG 3 cut(s) 85, 250, 274
NspI RCATGY 1 cut(s) 85
PaeR7I CTCGAG 1 cut(s) 146
PciI ACATGT 1 cut(s) 81
PciSI GCTCTTC 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 312
PfeI GAWTC 1 cut(s) 133
PflFI GACNNNGTC 1 cut(s) 11
PkrI GCNGC 1 cut(s) 217
PscI ACATGT 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 9
PspFI CCCAGC 1 cut(s) 22
PspGI CCWGG 1 cut(s) 9
PsuI RGATCY 1 cut(s) 88
PsyI GACNNNGTC 1 cut(s) 11
RseI CAYNNNNRTG 1 cut(s) 269
SapI GCTCTTC 1 cut(s) 153
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 2 cut(s) 36, 88
ScrFI CCNGG 1 cut(s) 11
SetI ASST 8 cut(s) 12, 28, 105, 125, 142, 184, 207, 220
SexAI ACCWGGT 1 cut(s) 9
SfaNI GCATC 4 cut(s) 62, 117, 142, 214
Sfr274I CTCGAG 1 cut(s) 146
SlaI CTCGAG 1 cut(s) 146
SmiMI CAYNNNNRTG 1 cut(s) 269
SmlI CTYRAG 3 cut(s) 92, 146, 206
SmoI CTYRAG 3 cut(s) 92, 146, 206
Sse9I AATT 3 cut(s) 167, 189, 301
StyD4I CCNGG 1 cut(s) 9
TaqI TCGA 1 cut(s) 147
TasI AATT 3 cut(s) 167, 189, 301
TfiI GAWTC 1 cut(s) 133
TseI GCWGC 1 cut(s) 215
TspGWI ACGGA 1 cut(s) 249
Tth111I GACNNNGTC 1 cut(s) 11
XapI RAATTY 2 cut(s) 189, 301
XceI RCATGY 1 cut(s) 85
XhoI CTCGAG 1 cut(s) 146
XmnI GAANNNNTTC 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.