pycom15g08440

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000400
Physical Location & Seq
Forward (+)
5295428 .. 5296527
1100 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g08440.1

Sequence Viewer

Length: 825 bp
ATGTATCTTGACCTGTCTTACACGCCTATCGACATGCTTCCTAGTAAGGCAAAGGATCTTGTATCTCTGCAGACTTTTAATCTAATTAATTGTCATAACCTTACTTATTTGCCTTCCTTGGAAAAGATGACCTGCCTAAGACATCTTAACATATTTGGATGTGAACGTTTGATTATGATGCCTGCTTGTATTAAACGTTTACGTCAACTTCAGACATTGCCATTATATATCCCTAGCAGCGAAGTATCCTTTGGCCTACCTGGCTTATTGCAGCCTGCAATACCTTGCATGTTGGAACAACTCGCACCCTTCACCCCACAACATTGTAAACCTGCTGAAGAAATCCTCGATAGTTTGCAATCACACAAAAATATGAAAAAGCTAGTTATAAATTGCTATCCAGGAATTAGATTTGCTGCTTGGGCTTTCCCAGAAAATGTAATTGCAGTTGAACTTACTCTTTCTCTGCATGGGATGCATGGCATGAGGCGCATTGGTATAGAGTTCTACGGTGATGGCGTAGACATATGGTTTTCATCACTTGAAGAACTATCAGTCATTGATTTTCCAAACTTGGAAGAGTGTTCAAGCGCAATTAATGAAAATTCATTCTCGTCCCTGAGGAAATTAATCCTTAAAAGATGTCCCAGGCTAGAAATTATCGCATTACCTCGATCCCTTCAACATCTGGAACTGCAAGGTTGTACTCTAACGTTAACTTCCATATCAAATTTAAGTCTCCTTTCTGTGCTTGTTCTAGACAACATTCCAGGCCTTTTCACTCTCCCAGAAGAGCTCATTGCATCACCCTGTCTGTCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 map03460
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

275

Amino Acids

30.76

Weight (kDa)

5.81

Isoelectric Point (pI)

73.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 2 - 78 1.2e-07 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000400)

Species Orthologous Gene IDs
malus_domestica MD05G1050700.v1.1 MD05G1050800.v1.1 MD08G1110700.v1.1 MD15G1090000.v1.1 MD15G1090100.v1.1 MD15G1090300.v1.1
prunus_persica Prupe.1G541300_v2.0.a1 Prupe.1G541300_v2.0.a1 Prupe.8G077100_v2.0.a1 Prupe.8G077200_v2.0.a1 Prupe.8G077500_v2.0.a1 Prupe.8G077600_v2.0.a1 Prupe.8G211300_v2.0.a1
pyrus_communis pycom05g04280 pycom08g09220 pycom15g08440
rosa_chinensis RchiOBHm_Chr1g0348461 RchiOBHm_Chr1g0348561 RchiOBHm_Chr6g0269201 RchiOBHm_Chr6g0269411 RchiOBHm_Chr6g0269421 RchiOBHm_Chr6g0269431 RchiOBHm_Chr7g0232901 RchiOBHm_Chr7g0232931 RchiOBHm_Chr7g0232961 RchiOBHm_Chr7g0232971
rosa_laevigata RLG00000001310
rosa_multiflora Rmu_sc0000091.1_g000001 Rmu_sc0000091.1_g000002 Rmu_sc0000091.1_g000008 Rmu_sc0000743.1_g000003 Rmu_sc0000743.1_g000004 Rmu_sc0005353.1_g000002 Rmu_sc0008668.1_g000002 Rmu_sc0015938.1_g000001 Rmu_ssc0000018.1_g000023 Rmu_ssc0000291.1_g000019 Rmu_ssc0000291.1_g000020 Rmu_ssc0000291.1_g000026 Rmu_ssc0000291.1_g000027
rosa_roxburghii Rroxscaffold_3G00227800 Rroxscaffold_3G00227820 Rroxscaffold_4G00306930 Rroxscaffold_4G00306950 Rroxscaffold_7G00198730
rosa_rugosa Rorug01G0194900 Rorug01G0194900 Rorug01G0195000 Rorug01G0195100 Rorug06G0045900 Rorug06G0046100 Rorug06G0047500 Rorug06G0047500 Rorug06G0047600 Rorug06G0047700 Rorug07G0276400 Rorug07G0276600 Rorug07G0276800.1 Rorug07G0276900
rosa_samantha Rh1AG213000 Rh1AG213100 Rh1BG179500 Rh1CG197300 Rh1CG197400 Rh1DG209600 Rh6AG166200 Rh6AG168000 Rh6AG168100 Rh6AG168200 Rh6BG171700 Rh6BG171800 Rh6BG173500 Rh6CG165300 Rh6CG167500 Rh6CG167600 Rh6DG156900 Rh6DG159400 Rh6DG159500 Rh6DG159600 Rh7AG431600 Rh7AG431700 Rh7AG431800 Rh7AG432100 Rh7AG432200 Rh7BG404700 Rh7BG404800 Rh7BG404900 Rh7BG405000 Rh7CG450600 Rh7CG450700 Rh7CG450800 Rh7CG451200 Rh7DG421300
rosa_wichuraiana Rw0G004710 Rw0G010410 Rw1G018020 Rw1G018040 Rw6G014350 Rw6G014450 Rw6G014470 Rw7G035660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 389
Acc36I ACCTGC 2 cut(s) 140, 340
AccI GTMKAC 1 cut(s) 522
AclI AACGTT 3 cut(s) 166, 196, 713
AclWI GGATC 2 cut(s) 63, 669
AcsI RAATTY 2 cut(s) 604, 730
AcuI CTGAAG 2 cut(s) 194, 357
AfaI GTAC 1 cut(s) 706
AgsI TTSAA 4 cut(s) 452, 545, 588, 683
AjnI CCWGG 4 cut(s) 259, 400, 647, 769
AjuI GAANNNNNNNTTGG 2 cut(s) 234, 266
AluBI AGCT 2 cut(s) 382, 796
AluI AGCT 2 cut(s) 382, 796
Alw21I GWGCWC 1 cut(s) 798
Alw26I GTCTC 1 cut(s) 743
AlwI GGATC 2 cut(s) 63, 669
AoxI GGCC 2 cut(s) 253, 772
ApeKI GCWGC 3 cut(s) 237, 271, 416
ApoI RAATTY 2 cut(s) 604, 730
AseI ATTAAT 3 cut(s) 87, 597, 629
AspLEI GCGC 2 cut(s) 492, 593
AsuHPI GGTGA 3 cut(s) 304, 524, 798
AxyI CCTNAGG 1 cut(s) 620
BanII GRGCYC 1 cut(s) 798
BbsI GAAGAC 1 cut(s) 810
Bbv12I GWGCWC 1 cut(s) 798
BbvI GCAGC 3 cut(s) 249, 283, 403
BccI CCATC 1 cut(s) 509
BciT130I CCWGG 4 cut(s) 261, 402, 649, 771
BciVI GTATCC 1 cut(s) 256
BcoDI GTCTC 1 cut(s) 743
BfaI CTAG 5 cut(s) 42, 234, 383, 653, 758
BfmI CTRYAG 1 cut(s) 68
BfuAI ACCTGC 2 cut(s) 140, 340
BfuI GTATCC 1 cut(s) 256
BglI GCCNNNNNGGC 1 cut(s) 261
BisI GCNGC 3 cut(s) 238, 272, 417
BlsI GCNGC 3 cut(s) 239, 273, 418
Bme1390I CCNGG 4 cut(s) 261, 402, 649, 771
BmrFI CCNGG 4 cut(s) 261, 402, 649, 771
BmsI GCATC 3 cut(s) 168, 465, 812
BpiI GAAGAC 1 cut(s) 810
BsaJI CCNNGG 2 cut(s) 117, 647
Bse21I CCTNAGG 1 cut(s) 620
Bse3DI GCAATG 2 cut(s) 215, 798
BseBI CCWGG 4 cut(s) 261, 402, 649, 771
BseDI CCNNGG 2 cut(s) 117, 647
BseGI GGATG 2 cut(s) 164, 480
BseMI GCAATG 2 cut(s) 215, 798
BseMII CTCAG 1 cut(s) 611
BseXI GCAGC 3 cut(s) 249, 283, 403
BshFI GGCC 2 cut(s) 255, 774
BsiHKAI GWGCWC 1 cut(s) 798
BslFI GGGAC 2 cut(s) 601, 630
BsmAI GTCTC 1 cut(s) 743
BsmFI GGGAC 2 cut(s) 601, 630
BsnI GGCC 2 cut(s) 255, 774
Bsp1286I GDGCHC 1 cut(s) 798
Bsp143I GATC 2 cut(s) 55, 674
BspANI GGCC 2 cut(s) 255, 774
BspCNI CTCAG 1 cut(s) 612
BspMAI CTGCAG 1 cut(s) 72
BspMI ACCTGC 2 cut(s) 140, 340
BspPI GGATC 2 cut(s) 63, 669
BspQI GCTCTTC 1 cut(s) 786
BsrDI GCAATG 2 cut(s) 215, 798
BssECI CCNNGG 2 cut(s) 117, 647
BssMI GATC 2 cut(s) 55, 674
BssT1I CCWWGG 1 cut(s) 117
Bst2UI CCWGG 4 cut(s) 261, 402, 649, 771
Bst4CI ACNGT 1 cut(s) 512
Bst6I CTCTTC 2 cut(s) 573, 786
BstAPI GCANNNNNTGC 1 cut(s) 475
BstC8I GCNNGC 2 cut(s) 183, 276
BstDEI CTNAG 2 cut(s) 137, 620
BstF5I GGATG 2 cut(s) 164, 480
BstHHI GCGC 2 cut(s) 492, 593
BstKTI GATC 2 cut(s) 58, 677
BstMAI GTCTC 1 cut(s) 743
BstMBI GATC 2 cut(s) 55, 674
BstMWI GCNNNNNNNGC 4 cut(s) 261, 422, 475, 489
BstNI CCWGG 4 cut(s) 261, 402, 649, 771
BstNSI RCATGY 2 cut(s) 37, 292
BstSCI CCNGG 4 cut(s) 259, 400, 647, 769
BstSFI CTRYAG 1 cut(s) 68
BstV1I GCAGC 3 cut(s) 249, 283, 403
BstV2I GAAGAC 1 cut(s) 810
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
Bsu36I CCTNAGG 1 cut(s) 620
BsuI GTATCC 1 cut(s) 256
BsuRI GGCC 2 cut(s) 255, 774
BtsCI GGATG 2 cut(s) 164, 480
BveI ACCTGC 2 cut(s) 140, 340
Cac8I GCNNGC 2 cut(s) 183, 276
CfoI GCGC 2 cut(s) 492, 593
Csp6I GTAC 1 cut(s) 705
CviAII CATG 5 cut(s) 34, 289, 470, 479, 484
CviJI RGCY 8 cut(s) 255, 264, 274, 382, 425, 652, 774, 796
CviKI_1 RGCY 8 cut(s) 255, 264, 274, 382, 425, 652, 774, 796
CviQI GTAC 1 cut(s) 705
DdeI CTNAG 2 cut(s) 137, 620
DpnI GATC 2 cut(s) 57, 676
DpnII GATC 2 cut(s) 55, 674
Eam1104I CTCTTC 2 cut(s) 573, 786
EarI CTCTTC 2 cut(s) 573, 786
Ecl136II GAGCTC 1 cut(s) 796
Eco130I CCWWGG 1 cut(s) 117
Eco147I AGGCCT 1 cut(s) 774
Eco24I GRGCYC 1 cut(s) 798
Eco53kI GAGCTC 1 cut(s) 796
Eco57I CTGAAG 2 cut(s) 194, 357
Eco81I CCTNAGG 1 cut(s) 620
EcoICRI GAGCTC 1 cut(s) 796
EcoRII CCWGG 4 cut(s) 259, 400, 647, 769
EcoT14I CCWWGG 1 cut(s) 117
EcoT22I ATGCAT 1 cut(s) 480
EcoT38I GRGCYC 1 cut(s) 798
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 5 cut(s) 37, 292, 473, 482, 487
FaqI GGGAC 2 cut(s) 601, 630
FatI CATG 5 cut(s) 33, 288, 469, 478, 483
FauNDI CATATG 1 cut(s) 527
FblI GTMKAC 1 cut(s) 522
Fnu4HI GCNGC 3 cut(s) 238, 272, 417
FokI GGATG 2 cut(s) 171, 487
FriOI GRGCYC 1 cut(s) 798
Fsp4HI GCNGC 3 cut(s) 238, 272, 417
FspBI CTAG 5 cut(s) 42, 234, 383, 653, 758
GlaI GCGC 2 cut(s) 491, 592
GluI GCNGC 3 cut(s) 238, 272, 417
HaeIII GGCC 2 cut(s) 255, 774
HhaI GCGC 2 cut(s) 492, 593
Hin1II CATG 5 cut(s) 37, 292, 473, 482, 487
Hin6I GCGC 2 cut(s) 490, 591
HinP1I GCGC 2 cut(s) 490, 591
HincII GTYRAC 2 cut(s) 206, 717
HindII GTYRAC 2 cut(s) 206, 717
HpaI GTTAAC 1 cut(s) 717
HphI GGTGA 3 cut(s) 304, 524, 798
Hpy166II GTNNAC 6 cut(s) 164, 200, 206, 329, 523, 717
Hpy188I TCNGA 1 cut(s) 213
Hpy188III TCNNGA 3 cut(s) 8, 689, 758
Hpy8I GTNNAC 6 cut(s) 164, 200, 206, 329, 523, 717
HpyAV CCTTC 3 cut(s) 123, 319, 689
HpyCH4III ACNGT 1 cut(s) 512
HpyCH4IV ACGT 4 cut(s) 166, 196, 202, 713
HpyF10VI GCNNNNNNNGC 4 cut(s) 261, 422, 475, 489
HpyF3I CTNAG 2 cut(s) 137, 620
HpySE526I ACGT 4 cut(s) 166, 196, 202, 713
Hsp92II CATG 5 cut(s) 37, 292, 473, 482, 487
HspAI GCGC 2 cut(s) 490, 591
KspAI GTTAAC 1 cut(s) 717
Kzo9I GATC 2 cut(s) 55, 674
LguI GCTCTTC 1 cut(s) 786
Lsp1109I GCAGC 3 cut(s) 249, 283, 403
LweI GCATC 3 cut(s) 168, 465, 812
MaeI CTAG 5 cut(s) 42, 234, 383, 653, 758
MaeII ACGT 4 cut(s) 166, 196, 202, 713
MalI GATC 2 cut(s) 57, 676
MboI GATC 2 cut(s) 55, 674
MboII GAAGA 5 cut(s) 350, 557, 590, 803, 810
MflI RGATCY 1 cut(s) 55
MhlI GDGCHC 1 cut(s) 798
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 4 cut(s) 356, 480, 615, 681
Mph1103I ATGCAT 1 cut(s) 480
MspR9I CCNGG 4 cut(s) 261, 402, 649, 771
MvaI CCWGG 4 cut(s) 261, 402, 649, 771
MwoI GCNNNNNNNGC 4 cut(s) 261, 422, 475, 489
NdeI CATATG 1 cut(s) 527
NdeII GATC 2 cut(s) 55, 674
NlaIII CATG 5 cut(s) 37, 292, 473, 482, 487
NsiI ATGCAT 1 cut(s) 480
NspI RCATGY 2 cut(s) 37, 292
PceI AGGCCT 1 cut(s) 774
PciSI GCTCTTC 1 cut(s) 786
PcsI WCGNNNNNNNCGW 1 cut(s) 516
PfoI TCCNGGA 1 cut(s) 400
PkrI GCNGC 3 cut(s) 239, 273, 418
PshBI ATTAAT 3 cut(s) 87, 597, 629
PsiI TTATAA 1 cut(s) 389
Psp124BI GAGCTC 1 cut(s) 798
Psp1406I AACGTT 3 cut(s) 166, 196, 713
Psp6I CCWGG 4 cut(s) 259, 400, 647, 769
PspGI CCWGG 4 cut(s) 259, 400, 647, 769
PstI CTGCAG 1 cut(s) 72
PsuI RGATCY 1 cut(s) 55
RsaI GTAC 1 cut(s) 706
RsaNI GTAC 1 cut(s) 705
SacI GAGCTC 1 cut(s) 798
SapI GCTCTTC 1 cut(s) 786
SatI GCNGC 3 cut(s) 238, 272, 417
Sau3AI GATC 2 cut(s) 55, 674
ScrFI CCNGG 4 cut(s) 261, 402, 649, 771
SduI GDGCHC 1 cut(s) 798
SfaNI GCATC 3 cut(s) 168, 465, 812
SfcI CTRYAG 1 cut(s) 68
SseBI AGGCCT 1 cut(s) 774
SspMI CTAG 5 cut(s) 42, 234, 383, 653, 758
SstI GAGCTC 1 cut(s) 798
StuI AGGCCT 1 cut(s) 774
StyD4I CCNGG 4 cut(s) 259, 400, 647, 769
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 1 cut(s) 512
TaiI ACGT 4 cut(s) 169, 199, 205, 716
TaqI TCGA 3 cut(s) 30, 348, 673
TatI WGTACW 1 cut(s) 704
TseI GCWGC 3 cut(s) 237, 271, 416
TspDTI ATGAA 4 cut(s) 389, 525, 597, 615
VspI ATTAAT 3 cut(s) 87, 597, 629
XapI RAATTY 2 cut(s) 604, 730
XbaI TCTAGA 1 cut(s) 757
XceI RCATGY 2 cut(s) 37, 292
XmiI GTMKAC 1 cut(s) 522
XspI CTAG 5 cut(s) 42, 234, 383, 653, 758
Zsp2I ATGCAT 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.