disease resistance
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rx_N | PF18052 | 6 - 80 | 2.2e-17 | Rx N-terminal domain |
| NB-ARC | PF00931 | 153 - 326 | 1.7e-39 | NB-ARC domain |
| WHD_DRP | PF23559 | 412 - 483 | 1e-21 | Disease resistance protein Winged helix domain |
| LRR_14 | PF23598 | 530 - 862 | 8.5e-21 | Leucine-rich repeat region |
| LRR_R13L1-DRL21 | PF25019 | 666 - 808 | 1.7e-28 | R13L1/DRL21 LRRs |
| LRR_14 | PF23598 | 885 - 1025 | 6.1e-07 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 943 - 1129 | 6e-06 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 993 - 1122 | 2.7e-12 | Leucine-rich repeat region |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2282 |
| AarI | CACCTGC | 1 cut(s) | 1599 |
| Acc36I | ACCTGC | 3 cut(s) | 693, 1599, 3311 |
| Acc65I | GGTACC | 1 cut(s) | 2465 |
| AccB1I | GGYRCC | 1 cut(s) | 2465 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 2381, 2856, 3089 |
| AccI | GTMKAC | 1 cut(s) | 1662 |
| AciI | CCGC | 7 cut(s) | 155, 871, 885, 1289, 2255, 2644, 3492 |
| AclWI | GGATC | 4 cut(s) | 259, 2203, 3270, 3502 |
| AcsI | RAATTY | 7 cut(s) | 189, 907, 1253, 2215, 2235, 2677, 3019 |
| AcuI | CTGAAG | 3 cut(s) | 710, 1862, 2792 |
| AcyI | GRCGYC | 1 cut(s) | 742 |
| AfaI | GTAC | 4 cut(s) | 1421, 2163, 2467, 3350 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 775, 1859, 2381, 2856, 3089 |
| AflII | CTTAAG | 1 cut(s) | 296 |
| AflIII | ACRYGT | 1 cut(s) | 2437 |
| AhlI | ACTAGT | 1 cut(s) | 3011 |
| AjnI | CCWGG | 3 cut(s) | 9, 507, 2293 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3076, 3108 |
| AleI | CACNNNNGTG | 1 cut(s) | 2442 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2290, 2322 |
| Alw21I | GWGCWC | 2 cut(s) | 1573, 2700 |
| Alw26I | GTCTC | 8 cut(s) | 113, 410, 640, 735, 1499, 1809, 1946, 2880 |
| AlwI | GGATC | 4 cut(s) | 259, 2203, 3270, 3502 |
| Ama87I | CYCGRG | 3 cut(s) | 146, 206, 2560 |
| AoxI | GGCC | 3 cut(s) | 380, 1873, 1989 |
| ApeKI | GCWGC | 4 cut(s) | 215, 748, 1058, 3222 |
| ApoI | RAATTY | 7 cut(s) | 189, 907, 1253, 2215, 2235, 2677, 3019 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 459, 491 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 723, 1518, 2235, 2625, 2712 |
| Asp718I | GGTACC | 1 cut(s) | 2465 |
| AspLEI | GCGC | 1 cut(s) | 1086 |
| AsuHPI | GGTGA | 5 cut(s) | 497, 1345, 1352, 2471, 3328 |
| AsuII | TTCGAA | 2 cut(s) | 2986, 3130 |
| AvaI | CYCGRG | 3 cut(s) | 146, 206, 2560 |
| AxyI | CCTNAGG | 2 cut(s) | 3456, 3487 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1787, 1820, 3332, 3365 |
| BanI | GGYRCC | 1 cut(s) | 2465 |
| BanII | GRGCYC | 1 cut(s) | 1573 |
| BauI | CACGAG | 4 cut(s) | 770, 1315, 1566, 1799 |
| BbsI | GAAGAC | 3 cut(s) | 486, 674, 3492 |
| Bbv12I | GWGCWC | 2 cut(s) | 1573, 2700 |
| BbvCI | CCTCAGC | 1 cut(s) | 228 |
| BbvI | GCAGC | 4 cut(s) | 227, 735, 1070, 3209 |
| BccI | CCATC | 6 cut(s) | 839, 1279, 1394, 2456, 2809, 2951 |
| BceAI | ACGGC | 1 cut(s) | 1999 |
| BciT130I | CCWGG | 3 cut(s) | 11, 509, 2295 |
| BciVI | GTATCC | 3 cut(s) | 28, 1788, 2301 |
| BcoDI | GTCTC | 8 cut(s) | 113, 410, 640, 735, 1499, 1809, 1946, 2880 |
| BcuI | ACTAGT | 1 cut(s) | 3011 |
| BfaI | CTAG | 8 cut(s) | 270, 420, 1157, 1676, 2276, 2301, 2832, 3012 |
| BfmI | CTRYAG | 2 cut(s) | 1808, 2334 |
| BfrI | CTTAAG | 1 cut(s) | 296 |
| BfuAI | ACCTGC | 3 cut(s) | 693, 1599, 3311 |
| BfuI | GTATCC | 3 cut(s) | 28, 1788, 2301 |
| BglII | AGATCT | 2 cut(s) | 1678, 2866 |
| BisI | GCNGC | 4 cut(s) | 216, 749, 1059, 3223 |
| BlsI | GCNGC | 4 cut(s) | 217, 750, 1060, 3224 |
| Bme1390I | CCNGG | 3 cut(s) | 11, 509, 2295 |
| BmeT110I | CYCGRG | 3 cut(s) | 146, 206, 2560 |
| BmiI | GGNNCC | 1 cut(s) | 2467 |
| BmrFI | CCNGG | 3 cut(s) | 11, 509, 2295 |
| BmrI | ACTGGG | 1 cut(s) | 817 |
| BmuI | ACTGGG | 1 cut(s) | 817 |
| BpiI | GAAGAC | 3 cut(s) | 486, 674, 3492 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 407, 439 |
| BpmI | CTGGAG | 3 cut(s) | 89, 2939, 3329 |
| Bpu10I | CCTNAGC | 3 cut(s) | 228, 3146, 3372 |
| Bpu14I | TTCGAA | 2 cut(s) | 2986, 3130 |
| BpuEI | CTTGAG | 4 cut(s) | 483, 1970, 3016, 3398 |
| Bsa29I | ATCGAT | 1 cut(s) | 1393 |
| BsaBI | GATNNNNATC | 1 cut(s) | 520 |
| BsaHI | GRCGYC | 1 cut(s) | 742 |
| BsaI | GGTCTC | 2 cut(s) | 113, 1499 |
| BsaJI | CCNNGG | 2 cut(s) | 2055, 3155 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 886, 916, 2930, 2960 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 775, 1859, 2381, 2856, 3089 |
| Bse118I | RCCGGY | 1 cut(s) | 3316 |
| Bse1I | ACTGG | 3 cut(s) | 812, 2922, 3346 |
| Bse21I | CCTNAGG | 2 cut(s) | 3456, 3487 |
| Bse3DI | GCAATG | 1 cut(s) | 1955 |
| Bse8I | GATNNNNATC | 1 cut(s) | 520 |
| BseBI | CCWGG | 3 cut(s) | 11, 509, 2295 |
| BseCI | ATCGAT | 1 cut(s) | 1393 |
| BseDI | CCNNGG | 2 cut(s) | 2055, 3155 |
| BseJI | GATNNNNATC | 1 cut(s) | 520 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 775, 1859, 2381, 2856, 3089 |
| BseMI | GCAATG | 1 cut(s) | 1955 |
| BseMII | CTCAG | 8 cut(s) | 219, 723, 746, 2205, 3137, 3363, 3470, 3501 |
| BseNI | ACTGG | 3 cut(s) | 812, 2922, 3346 |
| BseRI | GAGGAG | 6 cut(s) | 758, 950, 953, 996, 1519, 3444 |
| BseXI | GCAGC | 4 cut(s) | 227, 735, 1070, 3209 |
| BseYI | CCCAGC | 3 cut(s) | 22, 948, 1999 |
| BsgI | GTGCAG | 7 cut(s) | 224, 721, 734, 2466, 2992, 3185, 3208 |
| BshFI | GGCC | 3 cut(s) | 382, 1875, 1991 |
| BshNI | GGYRCC | 1 cut(s) | 2465 |
| BshVI | ATCGAT | 1 cut(s) | 1393 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1573, 2700 |
| BsiHKCI | CYCGRG | 3 cut(s) | 146, 206, 2560 |
| BsiSI | CCGG | 2 cut(s) | 2954, 3317 |
| BslFI | GGGAC | 5 cut(s) | 369, 824, 1481, 2127, 2577 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 775, 1859, 2381, 2856, 3089 |
| BsmAI | GTCTC | 8 cut(s) | 113, 410, 640, 735, 1499, 1809, 1946, 2880 |
| BsmBI | CGTCTC | 1 cut(s) | 2880 |
| BsmFI | GGGAC | 5 cut(s) | 369, 824, 1481, 2127, 2577 |
| BsnI | GGCC | 3 cut(s) | 382, 1875, 1991 |
| Bso31I | GGTCTC | 2 cut(s) | 113, 1499 |
| BsoBI | CYCGRG | 3 cut(s) | 146, 206, 2560 |
| Bsp119I | TTCGAA | 2 cut(s) | 2986, 3130 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1573, 2700 |
| BspACI | CCGC | 7 cut(s) | 155, 871, 885, 1289, 2255, 2644, 3492 |
| BspANI | GGCC | 3 cut(s) | 382, 1875, 1991 |
| BspCNI | CTCAG | 8 cut(s) | 220, 722, 745, 2204, 3138, 3364, 3469, 3500 |
| BspDI | ATCGAT | 1 cut(s) | 1393 |
| BspHI | TCATGA | 4 cut(s) | 663, 891, 1441, 2151 |
| BspLI | GGNNCC | 1 cut(s) | 2467 |
| BspMAI | CTGCAG | 2 cut(s) | 1812, 2338 |
| BspMI | ACCTGC | 3 cut(s) | 693, 1599, 3311 |
| BspPI | GGATC | 4 cut(s) | 259, 2203, 3270, 3502 |
| BspQI | GCTCTTC | 1 cut(s) | 153 |
| BspT104I | TTCGAA | 2 cut(s) | 2986, 3130 |
| BspT107I | GGYRCC | 1 cut(s) | 2465 |
| BspTI | CTTAAG | 1 cut(s) | 296 |
| BspTNI | GGTCTC | 2 cut(s) | 113, 1499 |
| BsrDI | GCAATG | 1 cut(s) | 1955 |
| BsrFI | RCCGGY | 1 cut(s) | 3316 |
| BsrI | ACTGG | 3 cut(s) | 812, 2922, 3346 |
| BssAI | RCCGGY | 1 cut(s) | 3316 |
| BssECI | CCNNGG | 2 cut(s) | 2055, 3155 |
| BssNAI | GTATAC | 1 cut(s) | 1663 |
| BssNI | GRCGYC | 1 cut(s) | 742 |
| BssSI | CACGAG | 4 cut(s) | 770, 1315, 1566, 1799 |
| BssT1I | CCWWGG | 2 cut(s) | 2055, 3155 |
| Bst1107I | GTATAC | 1 cut(s) | 1663 |
| Bst2BI | CACGAG | 4 cut(s) | 770, 1315, 1566, 1799 |
| Bst2UI | CCWGG | 3 cut(s) | 11, 509, 2295 |
| Bst6I | CTCTTC | 6 cut(s) | 153, 448, 984, 2487, 2520, 2631 |
| BstACI | GRCGYC | 1 cut(s) | 742 |
| BstAFI | CTTAAG | 1 cut(s) | 296 |
| BstBI | TTCGAA | 2 cut(s) | 2986, 3130 |
| BstC8I | GCNNGC | 5 cut(s) | 1262, 1322, 1900, 3318, 3481 |
| BstHHI | GCGC | 1 cut(s) | 1086 |
| BstMAI | GTCTC | 8 cut(s) | 113, 410, 640, 735, 1499, 1809, 1946, 2880 |
| BstNI | CCWGG | 3 cut(s) | 11, 509, 2295 |
| BstNSI | RCATGY | 1 cut(s) | 1902 |
| BstSCI | CCNGG | 3 cut(s) | 9, 507, 2293 |
| BstSFI | CTRYAG | 2 cut(s) | 1808, 2334 |
| BstV1I | GCAGC | 4 cut(s) | 227, 735, 1070, 3209 |
| BstV2I | GAAGAC | 3 cut(s) | 486, 674, 3492 |
| BstX2I | RGATCY | 3 cut(s) | 1678, 2866, 3275 |
| BstYI | RGATCY | 3 cut(s) | 1678, 2866, 3275 |
| BstZ17I | GTATAC | 1 cut(s) | 1663 |
| Bsu15I | ATCGAT | 1 cut(s) | 1393 |
| Bsu36I | CCTNAGG | 2 cut(s) | 3456, 3487 |
| BsuI | GTATCC | 3 cut(s) | 28, 1788, 2301 |
| BsuRI | GGCC | 3 cut(s) | 382, 1875, 1991 |
| BsuTUI | ATCGAT | 1 cut(s) | 1393 |
| BtsI | GCAGTG | 2 cut(s) | 2801, 3197 |
| BtsIMutI | CAGTG | 5 cut(s) | 1112, 2801, 2915, 3197, 3202 |
| BveI | ACCTGC | 3 cut(s) | 693, 1599, 3311 |
| Cac8I | GCNNGC | 5 cut(s) | 1262, 1322, 1900, 3318, 3481 |
| CciI | TCATGA | 4 cut(s) | 663, 891, 1441, 2151 |
| CfoI | GCGC | 1 cut(s) | 1086 |
| Cfr10I | RCCGGY | 1 cut(s) | 3316 |
| ClaI | ATCGAT | 1 cut(s) | 1393 |
| CseI | GACGC | 2 cut(s) | 731, 1478 |
| CsiI | ACCWGGT | 1 cut(s) | 9 |
| Csp6I | GTAC | 4 cut(s) | 1420, 2162, 2466, 3349 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1088, 1123 |
| CviQI | GTAC | 4 cut(s) | 1420, 2162, 2466, 3349 |
| DraI | TTTAAA | 1 cut(s) | 1818 |
| Eam1104I | CTCTTC | 6 cut(s) | 153, 448, 984, 2487, 2520, 2631 |
| EarI | CTCTTC | 6 cut(s) | 153, 448, 984, 2487, 2520, 2631 |
| EciI | GGCGGA | 2 cut(s) | 1304, 3507 |
| Ecl136II | GAGCTC | 1 cut(s) | 1571 |
| Eco130I | CCWWGG | 2 cut(s) | 2055, 3155 |
| Eco147I | AGGCCT | 3 cut(s) | 382, 1875, 1991 |
| Eco24I | GRGCYC | 1 cut(s) | 1573 |
| Eco31I | GGTCTC | 2 cut(s) | 113, 1499 |
| Eco32I | GATATC | 1 cut(s) | 1742 |
| Eco53kI | GAGCTC | 1 cut(s) | 1571 |
| Eco57I | CTGAAG | 3 cut(s) | 710, 1862, 2792 |
| Eco81I | CCTNAGG | 2 cut(s) | 3456, 3487 |
| Eco88I | CYCGRG | 3 cut(s) | 146, 206, 2560 |
| EcoICRI | GAGCTC | 1 cut(s) | 1571 |
| EcoRI | GAATTC | 3 cut(s) | 1253, 2215, 3019 |
| EcoRII | CCWGG | 3 cut(s) | 9, 507, 2293 |
| EcoRV | GATATC | 1 cut(s) | 1742 |
| EcoT14I | CCWWGG | 2 cut(s) | 2055, 3155 |
| EcoT22I | ATGCAT | 1 cut(s) | 523 |
| EcoT38I | GRGCYC | 1 cut(s) | 1573 |
| ErhI | CCWWGG | 2 cut(s) | 2055, 3155 |
| Esp3I | CGTCTC | 1 cut(s) | 2880 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 309, 341, 2223, 2255 |
| FaqI | GGGAC | 5 cut(s) | 369, 824, 1481, 2127, 2577 |
| FauI | CCCGC | 2 cut(s) | 878, 2637 |
| FauNDI | CATATG | 1 cut(s) | 1278 |
| FblI | GTMKAC | 1 cut(s) | 1662 |
| Fnu4HI | GCNGC | 4 cut(s) | 216, 749, 1059, 3223 |
| FriOI | GRGCYC | 1 cut(s) | 1573 |
| Fsp4HI | GCNGC | 4 cut(s) | 216, 749, 1059, 3223 |
| FspBI | CTAG | 8 cut(s) | 270, 420, 1157, 1676, 2276, 2301, 2832, 3012 |
| GlaI | GCGC | 1 cut(s) | 1085 |
| GluI | GCNGC | 4 cut(s) | 216, 749, 1059, 3223 |
| GsaI | CCCAGC | 3 cut(s) | 26, 952, 2003 |
| GsuI | CTGGAG | 3 cut(s) | 89, 2939, 3329 |
| HaeIII | GGCC | 3 cut(s) | 382, 1875, 1991 |
| HapII | CCGG | 2 cut(s) | 2954, 3317 |
| HgaI | GACGC | 2 cut(s) | 731, 1478 |
| HhaI | GCGC | 1 cut(s) | 1086 |
| Hin1I | GRCGYC | 1 cut(s) | 742 |
| Hin6I | GCGC | 1 cut(s) | 1084 |
| HinP1I | GCGC | 1 cut(s) | 1084 |
| HincII | GTYRAC | 2 cut(s) | 2577, 2584 |
| HindII | GTYRAC | 2 cut(s) | 2577, 2584 |
| HindIII | AAGCTT | 1 cut(s) | 2792 |
| HpaI | GTTAAC | 2 cut(s) | 2577, 2584 |
| HpaII | CCGG | 2 cut(s) | 2954, 3317 |
| HphI | GGTGA | 5 cut(s) | 497, 1345, 1352, 2471, 3328 |
| Hpy166II | GTNNAC | 7 cut(s) | 369, 1663, 1699, 2577, 2584, 2687, 2801 |
| Hpy8I | GTNNAC | 7 cut(s) | 369, 1663, 1699, 2577, 2584, 2687, 2801 |
| Hpy99I | CGWCG | 2 cut(s) | 402, 1985 |
| HpyCH4IV | ACGT | 3 cut(s) | 2024, 2439, 2659 |
| HpySE526I | ACGT | 3 cut(s) | 2024, 2439, 2659 |
| Hsp92I | GRCGYC | 1 cut(s) | 742 |
| HspAI | GCGC | 1 cut(s) | 1084 |
| KpnI | GGTACC | 1 cut(s) | 2469 |
| KroI | GCCGGC | 1 cut(s) | 3316 |
| KroNI | GCCGGC | 1 cut(s) | 3318 |
| KspAI | GTTAAC | 2 cut(s) | 2577, 2584 |
| LguI | GCTCTTC | 1 cut(s) | 153 |
| Lsp1109I | GCAGC | 4 cut(s) | 227, 735, 1070, 3209 |
| MabI | ACCWGGT | 1 cut(s) | 9 |
| MaeI | CTAG | 8 cut(s) | 270, 420, 1157, 1676, 2276, 2301, 2832, 3012 |
| MaeII | ACGT | 3 cut(s) | 2024, 2439, 2659 |
| MaeIII | GTNAC | 8 cut(s) | 438, 685, 862, 1184, 2050, 2484, 2927, 2933 |
| MfeI | CAATTG | 1 cut(s) | 1014 |
| MflI | RGATCY | 3 cut(s) | 1678, 2866, 3275 |
| MhlI | GDGCHC | 2 cut(s) | 1573, 2700 |
| MlyI | GAGTC | 7 cut(s) | 689, 893, 1906, 2114, 2311, 3158, 3260 |
| MmeI | TCCRAC | 4 cut(s) | 198, 756, 1522, 2541 |
| Mph1103I | ATGCAT | 1 cut(s) | 523 |
| MroNI | GCCGGC | 1 cut(s) | 3316 |
| MroXI | GAANNNNTTC | 5 cut(s) | 723, 1518, 2235, 2625, 2712 |
| MslI | CAYNNNNRTG | 2 cut(s) | 801, 2442 |
| MspCI | CTTAAG | 1 cut(s) | 296 |
| MspI | CCGG | 2 cut(s) | 2954, 3317 |
| MspR9I | CCNGG | 3 cut(s) | 11, 509, 2295 |
| MunI | CAATTG | 1 cut(s) | 1014 |
| MvaI | CCWGG | 3 cut(s) | 11, 509, 2295 |
| NaeI | GCCGGC | 1 cut(s) | 3318 |
| NdeI | CATATG | 1 cut(s) | 1278 |
| NgoMIV | GCCGGC | 1 cut(s) | 3316 |
| NlaIV | GGNNCC | 1 cut(s) | 2467 |
| NmuCI | GTSAC | 4 cut(s) | 438, 2484, 2927, 2933 |
| NsiI | ATGCAT | 1 cut(s) | 523 |
| NspI | RCATGY | 1 cut(s) | 1902 |
| NspV | TTCGAA | 2 cut(s) | 2986, 3130 |
| OliI | CACNNNNGTG | 1 cut(s) | 2442 |
| PaeI | GCATGC | 1 cut(s) | 1902 |
| PaeR7I | CTCGAG | 2 cut(s) | 146, 206 |
| PagI | TCATGA | 4 cut(s) | 663, 891, 1441, 2151 |
| PaqCI | CACCTGC | 1 cut(s) | 1599 |
| PceI | AGGCCT | 3 cut(s) | 382, 1875, 1991 |
| PciSI | GCTCTTC | 1 cut(s) | 153 |
| PdiI | GCCGGC | 1 cut(s) | 3318 |
| PdmI | GAANNNNTTC | 5 cut(s) | 723, 1518, 2235, 2625, 2712 |
| PflFI | GACNNNGTC | 1 cut(s) | 11 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 2381, 2856, 3089 |
| PfoI | TCCNGGA | 1 cut(s) | 2293 |
| PkrI | GCNGC | 4 cut(s) | 217, 750, 1060, 3224 |
| PleI | GAGTC | 7 cut(s) | 688, 893, 1906, 2113, 2311, 3158, 3260 |
| PpsI | GAGTC | 7 cut(s) | 688, 893, 1906, 2113, 2311, 3158, 3260 |
| PsiI | TTATAA | 1 cut(s) | 2282 |
| Psp124BI | GAGCTC | 1 cut(s) | 1573 |
| Psp6I | CCWGG | 3 cut(s) | 9, 507, 2293 |
| PspFI | CCCAGC | 3 cut(s) | 22, 948, 1999 |
| PspGI | CCWGG | 3 cut(s) | 9, 507, 2293 |
| PspN4I | GGNNCC | 1 cut(s) | 2467 |
| PstI | CTGCAG | 2 cut(s) | 1812, 2338 |
| PsuI | RGATCY | 3 cut(s) | 1678, 2866, 3275 |
| PsyI | GACNNNGTC | 1 cut(s) | 11 |
| RsaI | GTAC | 4 cut(s) | 1421, 2163, 2467, 3350 |
| RsaNI | GTAC | 4 cut(s) | 1420, 2162, 2466, 3349 |
| RseI | CAYNNNNRTG | 2 cut(s) | 801, 2442 |
| SacI | GAGCTC | 1 cut(s) | 1573 |
| SapI | GCTCTTC | 1 cut(s) | 153 |
| SatI | GCNGC | 4 cut(s) | 216, 749, 1059, 3223 |
| SchI | GAGTC | 7 cut(s) | 689, 893, 1906, 2114, 2311, 3158, 3260 |
| ScrFI | CCNGG | 3 cut(s) | 11, 509, 2295 |
| SduI | GDGCHC | 2 cut(s) | 1573, 2700 |
| SexAI | ACCWGGT | 1 cut(s) | 9 |
| SfcI | CTRYAG | 2 cut(s) | 1808, 2334 |
| Sfr274I | CTCGAG | 2 cut(s) | 146, 206 |
| SfuI | TTCGAA | 2 cut(s) | 2986, 3130 |
| SlaI | CTCGAG | 2 cut(s) | 146, 206 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 801, 2442 |
| SmlI | CTYRAG | 7 cut(s) | 146, 206, 296, 498, 1949, 3031, 3377 |
| SmoI | CTYRAG | 7 cut(s) | 146, 206, 296, 498, 1949, 3031, 3377 |
| SpeI | ACTAGT | 1 cut(s) | 3011 |
| SphI | GCATGC | 1 cut(s) | 1902 |
| SseBI | AGGCCT | 3 cut(s) | 382, 1875, 1991 |
| SsiI | CCGC | 7 cut(s) | 155, 871, 885, 1289, 2255, 2644, 3492 |
| SspI | AATATT | 2 cut(s) | 1519, 2713 |
| SspMI | CTAG | 8 cut(s) | 270, 420, 1157, 1676, 2276, 2301, 2832, 3012 |
| SstI | GAGCTC | 1 cut(s) | 1573 |
| StuI | AGGCCT | 3 cut(s) | 382, 1875, 1991 |
| StyD4I | CCNGG | 3 cut(s) | 9, 507, 2293 |
| StyI | CCWWGG | 2 cut(s) | 2055, 3155 |
| TaiI | ACGT | 3 cut(s) | 2027, 2442, 2662 |
| TscAI | CASTG | 5 cut(s) | 1112, 2808, 2922, 3204, 3209 |
| TseFI | GTSAC | 4 cut(s) | 438, 2484, 2927, 2933 |
| TseI | GCWGC | 4 cut(s) | 215, 748, 1058, 3222 |
| Tsp45I | GTSAC | 4 cut(s) | 438, 2484, 2927, 2933 |
| TspGWI | ACGGA | 2 cut(s) | 249, 397 |
| TspRI | CASTG | 5 cut(s) | 1112, 2808, 2922, 3204, 3209 |
| Tth111I | GACNNNGTC | 1 cut(s) | 11 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 2381, 2856, 3089 |
| Vha464I | CTTAAG | 1 cut(s) | 296 |
| XapI | RAATTY | 7 cut(s) | 189, 907, 1253, 2215, 2235, 2677, 3019 |
| XceI | RCATGY | 1 cut(s) | 1902 |
| XhoI | CTCGAG | 2 cut(s) | 146, 206 |
| XmiI | GTMKAC | 1 cut(s) | 1662 |
| XmnI | GAANNNNTTC | 5 cut(s) | 723, 1518, 2235, 2625, 2712 |
| XspI | CTAG | 8 cut(s) | 270, 420, 1157, 1676, 2276, 2301, 2832, 3012 |
| Zsp2I | ATGCAT | 1 cut(s) | 523 |