Rh6DG156900

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000400
Physical Location & Seq
Reverse (-)
23541376 .. 23544999
3624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG156900.1

Sequence Viewer

Length: 3624 bp
ATGGAAGCAGCTGCAAGCATAGTTTTATCTCCTGCTTTGCAAGTTCTGTTTGACAGACTAGCATCCCCGCTCCTCGAAAGGACTGCTGATATTTTCGGTTTCAAGGACAACCTCCGCAGCCTACGACATGCGTTGTCAAGGGCTCAAGCTACCCTGGAGGATGCAGAAGAGCAACAATTCACCAGCAAAGCCATTAGACTTTGGCTGTCTGACCTCAAGAATGCAGCCATGGATGCACAGGATCTTCTGGAGTTCTTCATTGCTCATGAAACTTTGGAGAAAGAGACCGGCAAGGATGTTCCTCAGGTTTTGCTTATTGCTTCTAATCATCCGGACAATGTCAGAAAGGTTCTTCAGGCCTTAGAACTGAGTCTATCAGAGGGATTTCCACTGTTGAGTGTTAGAGATCCTACCCTGCCTCGTATGGCCGATCGAAGATGTGATAACAGGGAGACTAGTTCCTTTTTTGTGGACTCGAAGATATATGGAAGAGATGATGACAAAGACAGGTTAGTCCAACTCTTGCTATCTTCTGCTGCAACCAGCCAGGTGAGTCAACAGGAATATGGATGTGTTGCAGCGTGCATTCCAATAATCGGTATTGGAGGAATTGGTAAGACCACTCTTGCTCAACTGACATATAATGATAAGAGCATAATCCAACACTTCGATCTTAGGGTGTGGATTTCTGTCTCTACAGTCTTCAGTGTGAAACATATACTGCAGACCATTATTGCTTCTGCAACAAAGGATGACTGCGAGCTTTCAAAGATCCTGTCGAAGAAATATTATTCTATCGACTATATGATTAACAGACTTCAAGATTTGCTTTATGAATCTTTACACAACAAAAGGTATCTGATCGTATTAGATGATGTCTGGACGGAAGACCAAGATGACTGGGACAAATTAAGACCTTTGTTTACAGCGGGTCTGGATGGGTGCAAAATCATTGTCACCACCCGCAGTAAGAAAATCCCATTCATGATGGACTTCCCAAATTACCCATATCATTTGAAGGGTTTGGCAGAGGATGATTGCTGGGCTCTGTTCAAACACCGGGCATTTGGATTAGGCGAAGAAGCCAAGTATCCAAACCTTGTGCTGATTTCAAAGCAGATTGTTAAAAAATGTGGAGGTGTACCTTTAGCAGCAAAAAGTTTGGGAAGTGCAATGCGCTTGAAGAGACAGGAAAGGCAGTGGTTGTTCATGCGAGATTGCGAACTCTGGAAATTAGATGCAAGCCAGCATAAAGTTCTACCTGCTCTCATGCTGAGTTATCATCATCTACCATCTCATCTTCGACAATGTTTTGAATTCTGCTCATTGTTTCCCAAATATTATGAGTTCAAGAAGCAGCGATTAATTCATCTATGGATGGCAGGAGGCTTAATTCTACAAGAAGGAAACAAGCGACCAGAAGACATTGGAGATGAGTACTTTGATGATTTGTTGTGGATGTCTTTCTTTGAAGAAGTAGAGCAATGTGATTGTGGCAGCACAGCAATTGCATACAAAATGATTGACATCATTCATGATCTTGCACGATATGTTGCAGGTAAAGAATATGTGATCCTTGAACTTGGTCTTTCAATACATAGTCCAACACAAATTCGCCATTCATCTCTTGTTCCTACGGGGGAAATCGCAATTCCAGAAGCTCTGTATGAAGCTGAACATTTGCGGTCTCTCTTGGTCATTGGAGGTTTTGGCACAGTCAAAAACCAAAGCAAATTATTTTCAAGTTTTGTATACTTGCGTATGCTAGACTTGAAGAGGTGTGGTATAGATGATTTGCCAAGATCATTGGGTGGCTTGATATGTTTGAGGTATCTTGACATGTCTTACACACGCATCTCCATGTTACCTCAAAGCACAAGTAATCTCTGTCTTTTGCAGACTTTAAACCTTGTTGGTTGTGGTCACCTTAAAGCGTTACCCTTTTTGGGAAATATGATCAACCTGAGACATCTCAATATAACCGGATGTAATCGTTTGAATGAGATGCCTTTTGGTATTCAAAGATTACTTCAACTTCAGATATTGCCATTGTGTGTTGTCAGCAGGAACCAAAGGGCGCTCACTATGCTTGAACATTTGAATCTTTATGGCGAGTTGAATATCACCTACTTGGAGAACACAAGCTCTCCAGATGAAGCACAATCAGCTCGATTGAATATGAAGGAAAATCTTGAGTCGGTAGGATTACATTGGGGATCCCAACCTCTGGATCAATCATTTCCGAGACTATTAGGTAAATCCCAACGTGATGTAGTCATCTCCAGCTCTCATGTAGCGCCACAGCTGTGTAAACGTGCGGAAGAAGTTCTTGACGGTCTGCAGCCACACAATAATCTTAAAAAGCTAGTTATAAATGGCTATCCGGGAATTAGATTTGCTGATTGGGCTCTCCCAAAAATGCTGATTACAGTTGATTTGATCAACTGTACAAATTGTCAACATCTTCCAGCCCTTGGGAATCTTCCGCTGCTCAAGACACTCTATATGCATGGAATGGATGGCGTCAAGTGCATTGGTACAGAGTTCTATGGTGACGGTACTGATGTAAGGTTTCCATCTCTGGAAGAACTATCTCTCAGTCATTTTCCAAATTTGGAACAATTGTCATGTGCAGATGATGGAAATGCATTTCCTCATTTGAGCAAGTTAACAGTTAGAAGCTGCCCCAAGTTACAACAGATATCATTATCTCAGACTCTTCAGCATTTGGAGCTACGGGATTGCAATCCAACATTGATGTGCATAGAAAATTTAACTTTGCTTTCTGTGCTTGTAATAGAAAAAATTCCAGAGCTAACCTCTCTCCCAGAAGGGCTTTTTGTGTCAGTTCGCCTGTCTTCTCTGGAGATCTTGTCATGTCCTAAGCTTCGTTCACTGCCTATGAAGATGGGAAACCTTACTGCTCTGAAATCATTGACCATTCGATGGTGTGAAGAGCTATCCACCCTACCCCAGAGTATAGAGGACCTCAAAGCTCTGGAGTCACTGGAGATTAGTAACTGTAATAATATAATCTCCATGCCGGATGGTGGAATTGCAGGTCTGAGTTCCCTTCGAACTTTGTCTATTGAAAACTGCAATAATCTGATTTCTTTGTCATCGAGTTTGGAGAATCTCACATTCCTTGAGCACTTGGTCATTATGTATTGTCCAAATCTTACTTCTTTCCCAGAGGGCACGGGCGCGCAACCTCTCTCTGCCCTACGAAGTTTGACTATCTTGGGTTGTCCTTGGTTTGATTCTCTACCAAATGAATTGCAAAATCTCAGGACGCTACGATGCCTGGAAATTGGTGGCTGCCCCAATCTAACTGCTTTGCCAGACTGGTTTGAGAAACTGGATTCTCTCCGATCCTTGACCATTTGTGATTGTCCCAATTTAATGGTACTGCCGCCCTGTCTAACGCTTCTCACTAAACTCCAGCATCTCTCCATTCAAGATTGTCCTCAGCTCGAAGAAAGATGTAGATGGGGAATTGGAGAGGATTGGTTCAAAATAGCACATGTGCCCCATCGATACATTGGTCCAAGTCAGGTGACTGAGGTCGGGCCGTCCATCATCCATGATGGAATTAGTATGCTCCGGGCCGTCCATTATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 map03460
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

1207

Amino Acids

135.93

Weight (kDa)

6.01

Isoelectric Point (pI)

52.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 10 - 99 3.3e-17 Rx N-terminal domain
NB-ARC PF00931 195 - 356 3.5e-35 NB-ARC domain
WHD_DRP PF23559 443 - 515 1.1e-22 Disease resistance protein Winged helix domain
LRR_14 PF23598 560 - 893 8.9e-21 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 695 - 839 4.7e-28 R13L1/DRL21 LRRs
LRR_14 PF23598 896 - 1091 3.7e-11 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000400)

Species Orthologous Gene IDs
malus_domestica MD05G1050700.v1.1 MD05G1050800.v1.1 MD08G1110700.v1.1 MD15G1090000.v1.1 MD15G1090100.v1.1 MD15G1090300.v1.1
prunus_persica Prupe.1G541300_v2.0.a1 Prupe.1G541300_v2.0.a1 Prupe.8G077100_v2.0.a1 Prupe.8G077200_v2.0.a1 Prupe.8G077500_v2.0.a1 Prupe.8G077600_v2.0.a1 Prupe.8G211300_v2.0.a1
pyrus_communis pycom05g04280 pycom08g09220 pycom15g08440
rosa_chinensis RchiOBHm_Chr1g0348461 RchiOBHm_Chr1g0348561 RchiOBHm_Chr6g0269201 RchiOBHm_Chr6g0269411 RchiOBHm_Chr6g0269421 RchiOBHm_Chr6g0269431 RchiOBHm_Chr7g0232901 RchiOBHm_Chr7g0232931 RchiOBHm_Chr7g0232961 RchiOBHm_Chr7g0232971
rosa_laevigata RLG00000001310
rosa_multiflora Rmu_sc0000091.1_g000001 Rmu_sc0000091.1_g000002 Rmu_sc0000091.1_g000008 Rmu_sc0000743.1_g000003 Rmu_sc0000743.1_g000004 Rmu_sc0005353.1_g000002 Rmu_sc0008668.1_g000002 Rmu_sc0015938.1_g000001 Rmu_ssc0000018.1_g000023 Rmu_ssc0000291.1_g000019 Rmu_ssc0000291.1_g000020 Rmu_ssc0000291.1_g000026 Rmu_ssc0000291.1_g000027
rosa_roxburghii Rroxscaffold_3G00227800 Rroxscaffold_3G00227820 Rroxscaffold_4G00306930 Rroxscaffold_4G00306950 Rroxscaffold_7G00198730
rosa_rugosa Rorug01G0194900 Rorug01G0194900 Rorug01G0195000 Rorug01G0195100 Rorug06G0045900 Rorug06G0046100 Rorug06G0047500 Rorug06G0047500 Rorug06G0047600 Rorug06G0047700 Rorug07G0276400 Rorug07G0276600 Rorug07G0276800.1 Rorug07G0276900
rosa_samantha Rh1AG213000 Rh1AG213100 Rh1BG179500 Rh1CG197300 Rh1CG197400 Rh1DG209600 Rh6AG166200 Rh6AG168000 Rh6AG168100 Rh6AG168200 Rh6BG171700 Rh6BG171800 Rh6BG173500 Rh6CG165300 Rh6CG167500 Rh6CG167600 Rh6DG156900 Rh6DG159400 Rh6DG159500 Rh6DG159600 Rh7AG431600 Rh7AG431700 Rh7AG431800 Rh7AG432100 Rh7AG432200 Rh7BG404700 Rh7BG404800 Rh7BG404900 Rh7BG405000 Rh7CG450600 Rh7CG450700 Rh7CG450800 Rh7CG451200 Rh7DG421300
rosa_wichuraiana Rw0G004710 Rw0G010410 Rw1G018020 Rw1G018040 Rw6G014350 Rw6G014450 Rw6G014470 Rw7G035660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2372
AasI GACNNNNNNGTC 1 cut(s) 512
Acc36I ACCTGC 3 cut(s) 1270, 1547, 3050
AccB7I CCANNNNNTGG 3 cut(s) 2227, 2474, 2946
AccBSI CCGCTC 1 cut(s) 70
AccI GTMKAC 1 cut(s) 1752
AccII CGCG 1 cut(s) 3206
AccIII TCCGGA 1 cut(s) 331
AciI CCGC 8 cut(s) 68, 115, 929, 964, 1684, 2318, 2486, 3413
AclWI GGATC 8 cut(s) 249, 401, 766, 1567, 2211, 2224, 2238, 3366
AcoI YGGCCR 1 cut(s) 426
AcsI RAATTY 5 cut(s) 1316, 1611, 2611, 2770, 2805
AcuI CTGAAG 4 cut(s) 338, 688, 2021, 2705
AcyI GRCGYC 1 cut(s) 2523
AfaI GTAC 6 cut(s) 1143, 1439, 2449, 2539, 2560, 3408
AfiI CCNNNNNNNGG 6 cut(s) 596, 1946, 2227, 2474, 2946, 3050
AflIII ACRYGT 2 cut(s) 1839, 3523
AhlI ACTAGT 1 cut(s) 455
AjnI CCWGG 3 cut(s) 153, 546, 3303
AjuI GAANNNNNNNTTGG 2 cut(s) 3166, 3198
AleI CACNNNNGTG 1 cut(s) 2305
Alw21I GWGCWC 1 cut(s) 3153
Alw26I GTCTC 7 cut(s) 278, 446, 697, 1180, 1692, 1960, 2239
AlwI GGATC 8 cut(s) 249, 401, 766, 1567, 2211, 2224, 2238, 3366
Aor13HI TCCGGA 1 cut(s) 331
AoxI GGCC 4 cut(s) 357, 426, 3569, 3606
ApoI RAATTY 5 cut(s) 1316, 1611, 2611, 2770, 2805
ArsI GACNNNNNNTTYG 4 cut(s) 761, 793, 939, 971
AseI ATTAAT 1 cut(s) 1364
Asp700I GAANNNNTTC 2 cut(s) 2325, 2805
AspLEI GCGC 5 cut(s) 1179, 2080, 2299, 3206, 3208
AspS9I GGNCC 4 cut(s) 2986, 3545, 3569, 3606
AsuC2I CCSGG 3 cut(s) 1061, 2385, 3605
AsuHPI GGTGA 7 cut(s) 172, 562, 949, 1916, 2116, 2564, 3568
AsuII TTCGAA 1 cut(s) 3076
AvaII GGWCC 2 cut(s) 2986, 3545
AxyI CCTNAGG 1 cut(s) 303
BaeGI GKGCMC 2 cut(s) 3200, 3531
BaeI ACNNNNGTAYC 4 cut(s) 2550, 2583, 3529, 3562
BamHI GGATCC 1 cut(s) 2216
BanII GRGCYC 3 cut(s) 145, 1048, 2410
BbsI GAAGAC 4 cut(s) 694, 894, 1428, 2850
Bbv12I GWGCWC 1 cut(s) 3153
BbvCI CCTCAGC 1 cut(s) 3468
BceAI ACGGC 2 cut(s) 3556, 3593
BcgI CGANNNNNNTGC 2 cut(s) 65, 99
BciT130I CCWGG 3 cut(s) 155, 548, 3305
BciVI GTATCC 1 cut(s) 1101
BclI TGATCA 2 cut(s) 1956, 2439
BcnI CCSGG 3 cut(s) 1061, 2385, 3605
BcoDI GTCTC 7 cut(s) 278, 446, 697, 1180, 1692, 1960, 2239
BcuI ACTAGT 1 cut(s) 455
BfaI CTAG 4 cut(s) 59, 456, 1766, 2366
BfmI CTRYAG 3 cut(s) 696, 722, 2339
BfoI RGCGCY 2 cut(s) 2081, 2300
BfuAI ACCTGC 3 cut(s) 1270, 1547, 3050
BfuI GTATCC 1 cut(s) 1101
BglII AGATCT 1 cut(s) 2868
BmcAI AGTACT 1 cut(s) 1439
Bme1390I CCNGG 6 cut(s) 155, 548, 1061, 2385, 3305, 3605
Bme18I GGWCC 2 cut(s) 2986, 3545
BmgT120I GGNCC 4 cut(s) 2986, 3545, 3569, 3606
BmiI GGNNCC 2 cut(s) 2069, 2218
BmrFI CCNGG 6 cut(s) 155, 548, 1061, 2385, 3305, 3605
BmrI ACTGGG 1 cut(s) 910
BmsI GCATC 8 cut(s) 71, 151, 223, 1228, 1863, 1995, 3290, 3454
BmuI ACTGGG 1 cut(s) 910
BoxI GACNNNNGTC 1 cut(s) 3563
BpiI GAAGAC 4 cut(s) 694, 894, 1428, 2850
BplI GAGNNNNNCTC 2 cut(s) 2804, 2836
BpmI CTGGAG 8 cut(s) 176, 269, 2133, 2266, 2885, 3020, 3029, 3425
Bpu10I CCTNAGC 2 cut(s) 2883, 3468
Bpu14I TTCGAA 1 cut(s) 3076
BpuEI CTTGAG 5 cut(s) 129, 200, 2213, 2477, 3167
BpuMI CCSGG 3 cut(s) 1061, 2385, 3605
Bsa29I ATCGAT 1 cut(s) 3535
BsaBI GATNNNNATC 2 cut(s) 1526, 2745
BsaHI GRCGYC 1 cut(s) 2523
BsaI GGTCTC 2 cut(s) 278, 1692
BsaJI CCNNGG 4 cut(s) 153, 228, 2473, 3251
BsaWI WCCGGW 2 cut(s) 331, 1982
BsaXI ACNNNNNCTCC 4 cut(s) 2131, 2161, 2858, 2888
Bsc4I CCNNNNNNNGG 6 cut(s) 596, 1946, 2227, 2474, 2946, 3050
Bse118I RCCGGY 1 cut(s) 287
Bse1I ACTGG 4 cut(s) 905, 3012, 3350, 3363
Bse21I CCTNAGG 1 cut(s) 303
Bse3DI GCAATG 3 cut(s) 258, 1179, 1490
Bse8I GATNNNNATC 2 cut(s) 1526, 2745
BseAI TCCGGA 1 cut(s) 331
BseBI CCWGG 3 cut(s) 155, 548, 3305
BseCI ATCGAT 1 cut(s) 3535
BseDI CCNNGG 4 cut(s) 153, 228, 2473, 3251
BseJI GATNNNNATC 2 cut(s) 1526, 2745
BseLI CCNNNNNNNGG 6 cut(s) 596, 1946, 2227, 2474, 2946, 3050
BseMI GCAATG 3 cut(s) 258, 1179, 1490
BseNI ACTGG 4 cut(s) 905, 3012, 3350, 3363
BsePI GCGCGC 1 cut(s) 3204
BseRI GAGGAG 1 cut(s) 62
BseSI GKGCMC 2 cut(s) 3200, 3531
BseYI CCCAGC 1 cut(s) 1041
BsgI GTGCAG 1 cut(s) 2652
Bsh1236I CGCG 1 cut(s) 3206
Bsh1285I CGRYCG 1 cut(s) 433
BshFI GGCC 4 cut(s) 359, 428, 3571, 3608
BshVI ATCGAT 1 cut(s) 3535
BsiEI CGRYCG 1 cut(s) 433
BsiHKAI GWGCWC 1 cut(s) 3153
BsiSI CCGG 7 cut(s) 288, 332, 1060, 1983, 2384, 3044, 3604
BslFI GGGAC 2 cut(s) 917, 3378
BslI CCNNNNNNNGG 6 cut(s) 596, 1946, 2227, 2474, 2946, 3050
BsmAI GTCTC 7 cut(s) 278, 446, 697, 1180, 1692, 1960, 2239
BsmFI GGGAC 2 cut(s) 917, 3378
BsmI GAATGC 2 cut(s) 226, 585
BsnI GGCC 4 cut(s) 359, 428, 3571, 3608
Bso31I GGTCTC 2 cut(s) 278, 1692
Bsp119I TTCGAA 1 cut(s) 3076
Bsp1286I GDGCHC 6 cut(s) 145, 1048, 2410, 3153, 3200, 3531
Bsp13I TCCGGA 1 cut(s) 331
Bsp1407I TGTACA 1 cut(s) 2447
Bsp19I CCATGG 1 cut(s) 228
BspACI CCGC 8 cut(s) 68, 115, 929, 964, 1684, 2318, 2486, 3413
BspANI GGCC 4 cut(s) 359, 428, 3571, 3608
BspDI ATCGAT 1 cut(s) 3535
BspEI TCCGGA 1 cut(s) 331
BspFNI CGCG 1 cut(s) 3206
BspHI TCATGA 3 cut(s) 265, 984, 1534
BspLI GGNNCC 2 cut(s) 2069, 2218
BspMAI CTGCAG 2 cut(s) 726, 2343
BspMI ACCTGC 3 cut(s) 1270, 1547, 3050
BspPI GGATC 8 cut(s) 249, 401, 766, 1567, 2211, 2224, 2238, 3366
BspQI GCTCTTC 2 cut(s) 162, 2949
BspT104I TTCGAA 1 cut(s) 3076
BspTNI GGTCTC 2 cut(s) 278, 1692
BsrBI CCGCTC 1 cut(s) 70
BsrDI GCAATG 3 cut(s) 258, 1179, 1490
BsrFI RCCGGY 1 cut(s) 287
BsrGI TGTACA 1 cut(s) 2447
BsrI ACTGG 4 cut(s) 905, 3012, 3350, 3363
BssAI RCCGGY 1 cut(s) 287
BssECI CCNNGG 4 cut(s) 153, 228, 2473, 3251
BssHII GCGCGC 1 cut(s) 3204
BssNAI GTATAC 1 cut(s) 1753
BssNI GRCGYC 1 cut(s) 2523
BssT1I CCWWGG 3 cut(s) 228, 2473, 3251
Bst1107I GTATAC 1 cut(s) 1753
Bst2UI CCWGG 3 cut(s) 155, 548, 3305
Bst4CI ACNGT 9 cut(s) 393, 700, 1717, 2336, 2431, 2447, 2558, 2674, 3023
Bst6I CTCTTC 6 cut(s) 162, 484, 1178, 1769, 2724, 2949
BstACI GRCGYC 1 cut(s) 2523
BstAUI TGTACA 1 cut(s) 2447
BstBI TTCGAA 1 cut(s) 3076
BstC8I GCNNGC 6 cut(s) 16, 583, 761, 1243, 1247, 3206
BstDSI CCRYGG 1 cut(s) 228
BstEII GGTNACC 1 cut(s) 1922
BstFNI CGCG 1 cut(s) 3206
BstH2I RGCGCY 2 cut(s) 2081, 2300
BstHHI GCGC 5 cut(s) 1179, 2080, 2299, 3206, 3208
BstMAI GTCTC 7 cut(s) 278, 446, 697, 1180, 1692, 1960, 2239
BstMCI CGRYCG 1 cut(s) 433
BstMWI GCNNNNNNNGC 7 cut(s) 233, 2086, 2165, 2405, 2529, 2731, 2788
BstNI CCWGG 3 cut(s) 155, 548, 3305
BstNSI RCATGY 3 cut(s) 131, 1843, 3527
BstPAI GACNNNNGTC 1 cut(s) 3563
BstPI GGTNACC 1 cut(s) 1922
BstSCI CCNGG 6 cut(s) 153, 546, 1059, 2383, 3303, 3603
BstSFI CTRYAG 3 cut(s) 696, 722, 2339
BstSLI GKGCMC 2 cut(s) 3200, 3531
BstUI CGCG 1 cut(s) 3206
BstV2I GAAGAC 4 cut(s) 694, 894, 1428, 2850
BstX2I RGATCY 5 cut(s) 241, 406, 771, 2216, 2868
BstXI CCANNNNNNTGG 1 cut(s) 3403
BstYI RGATCY 5 cut(s) 241, 406, 771, 2216, 2868
BstZ17I GTATAC 1 cut(s) 1753
Bsu15I ATCGAT 1 cut(s) 3535
Bsu36I CCTNAGG 1 cut(s) 303
BsuI GTATCC 1 cut(s) 1101
BsuRI GGCC 4 cut(s) 359, 428, 3571, 3608
BsuTUI ATCGAT 1 cut(s) 3535
BtgI CCRYGG 1 cut(s) 228
BtsI GCAGTG 2 cut(s) 1205, 2894
BtsIMutI CAGTG 5 cut(s) 389, 712, 1205, 2894, 3005
BveI ACCTGC 3 cut(s) 1270, 1547, 3050
Cac8I GCNNGC 6 cut(s) 16, 583, 761, 1243, 1247, 3206
CciI TCATGA 3 cut(s) 265, 984, 1534
CfoI GCGC 5 cut(s) 1179, 2080, 2299, 3206, 3208
Cfr10I RCCGGY 1 cut(s) 287
Cfr13I GGNCC 4 cut(s) 2986, 3545, 3569, 3606
ClaI ATCGAT 1 cut(s) 3535
CseI GACGC 2 cut(s) 2512, 3301
Csp6I GTAC 6 cut(s) 1142, 1438, 2448, 2538, 2559, 3407
CviQI GTAC 6 cut(s) 1142, 1438, 2448, 2538, 2559, 3407
DraI TTTAAA 1 cut(s) 1905
DrdI GACNNNNNNGTC 1 cut(s) 512
DseDI GACNNNNNNGTC 1 cut(s) 512
EaeI YGGCCR 1 cut(s) 426
Eam1104I CTCTTC 6 cut(s) 162, 484, 1178, 1769, 2724, 2949
EarI CTCTTC 6 cut(s) 162, 484, 1178, 1769, 2724, 2949
Eco130I CCWWGG 3 cut(s) 228, 2473, 3251
Eco147I AGGCCT 1 cut(s) 359
Eco24I GRGCYC 3 cut(s) 145, 1048, 2410
Eco31I GGTCTC 2 cut(s) 278, 1692
Eco32I GATATC 1 cut(s) 2703
Eco47I GGWCC 2 cut(s) 2986, 3545
Eco57I CTGAAG 4 cut(s) 338, 688, 2021, 2705
Eco81I CCTNAGG 1 cut(s) 303
Eco91I GGTNACC 1 cut(s) 1922
EcoO109I RGGNCCY 1 cut(s) 2986
EcoO65I GGTNACC 1 cut(s) 1922
EcoRI GAATTC 1 cut(s) 1316
EcoRII CCWGG 3 cut(s) 153, 546, 3303
EcoRV GATATC 1 cut(s) 2703
EcoT14I CCWWGG 3 cut(s) 228, 2473, 3251
EcoT22I ATGCAT 2 cut(s) 2511, 2650
EcoT38I GRGCYC 3 cut(s) 145, 1048, 2410
ErhI CCWWGG 3 cut(s) 228, 2473, 3251
FalI AAGNNNNNCTT 4 cut(s) 813, 845, 2313, 2345
FaqI GGGAC 2 cut(s) 917, 3378
FauI CCCGC 3 cut(s) 75, 922, 971
FbaI TGATCA 2 cut(s) 1956, 2439
FblI GTMKAC 1 cut(s) 1752
FriOI GRGCYC 3 cut(s) 145, 1048, 2410
FspBI CTAG 4 cut(s) 59, 456, 1766, 2366
GlaI GCGC 5 cut(s) 1178, 2079, 2298, 3205, 3207
GsaI CCCAGC 1 cut(s) 1045
GsuI CTGGAG 8 cut(s) 176, 269, 2133, 2266, 2885, 3020, 3029, 3425
HaeII RGCGCY 2 cut(s) 2081, 2300
HaeIII GGCC 4 cut(s) 359, 428, 3571, 3608
HapII CCGG 7 cut(s) 288, 332, 1060, 1983, 2384, 3044, 3604
HgaI GACGC 2 cut(s) 2512, 3301
HhaI GCGC 5 cut(s) 1179, 2080, 2299, 3206, 3208
Hin1I GRCGYC 1 cut(s) 2523
Hin6I GCGC 5 cut(s) 1177, 2078, 2297, 3204, 3206
HinP1I GCGC 5 cut(s) 1177, 2078, 2297, 3204, 3206
HincII GTYRAC 3 cut(s) 557, 2459, 2670
HindII GTYRAC 3 cut(s) 557, 2459, 2670
HindIII AAGCTT 1 cut(s) 2885
HpaI GTTAAC 1 cut(s) 2670
HpaII CCGG 7 cut(s) 288, 332, 1060, 1983, 2384, 3044, 3604
HphI GGTGA 7 cut(s) 172, 562, 949, 1916, 2116, 2564, 3568
Hpy166II GTNNAC 9 cut(s) 472, 557, 924, 1142, 1753, 2312, 2459, 2670, 2894
Hpy8I GTNNAC 9 cut(s) 472, 557, 924, 1142, 1753, 2312, 2459, 2670, 2894
HpyAV CCTTC 5 cut(s) 1012, 1397, 2176, 2825, 3083
HpyCH4III ACNGT 9 cut(s) 393, 700, 1717, 2336, 2431, 2447, 2558, 2674, 3023
HpyCH4IV ACGT 2 cut(s) 2266, 2314
HpyF10VI GCNNNNNNNGC 7 cut(s) 233, 2086, 2165, 2405, 2529, 2731, 2788
HpySE526I ACGT 2 cut(s) 2266, 2314
Hsp92I GRCGYC 1 cut(s) 2523
HspAI GCGC 5 cut(s) 1177, 2078, 2297, 3204, 3206
Kpn2I TCCGGA 1 cut(s) 331
Ksp22I TGATCA 2 cut(s) 1956, 2439
KspAI GTTAAC 1 cut(s) 2670
LguI GCTCTTC 2 cut(s) 162, 2949
LmnI GCTCC 3 cut(s) 75, 2731, 3606
LweI GCATC 8 cut(s) 71, 151, 223, 1228, 1863, 1995, 3290, 3454
MaeI CTAG 4 cut(s) 59, 456, 1766, 2366
MaeII ACGT 2 cut(s) 2266, 2314
MaeIII GTNAC 9 cut(s) 955, 1863, 1922, 1935, 2552, 2691, 3003, 3017, 3556
MbiI CCGCTC 1 cut(s) 70
MfeI CAATTG 2 cut(s) 1506, 2621
MflI RGATCY 5 cut(s) 241, 406, 771, 2216, 2868
MhlI GDGCHC 6 cut(s) 145, 1048, 2410, 3153, 3200, 3531
MlyI GAGTC 6 cut(s) 379, 467, 562, 2204, 2710, 3011
MmeI TCCRAC 4 cut(s) 541, 685, 1628, 2774
Mph1103I ATGCAT 2 cut(s) 2511, 2650
MroI TCCGGA 1 cut(s) 331
MroXI GAANNNNTTC 2 cut(s) 2325, 2805
MslI CAYNNNNRTG 3 cut(s) 1859, 2305, 2758
MspA1I CMGCKG 4 cut(s) 11, 929, 2305, 2488
MspI CCGG 7 cut(s) 288, 332, 1060, 1983, 2384, 3044, 3604
MspR9I CCNGG 6 cut(s) 155, 548, 1061, 2385, 3305, 3605
MunI CAATTG 2 cut(s) 1506, 2621
Mva1269I GAATGC 2 cut(s) 226, 585
MvaI CCWGG 3 cut(s) 155, 548, 3305
MvnI CGCG 1 cut(s) 3206
MwoI GCNNNNNNNGC 7 cut(s) 233, 2086, 2165, 2405, 2529, 2731, 2788
NciI CCSGG 3 cut(s) 1061, 2385, 3605
NcoI CCATGG 1 cut(s) 228
NlaIV GGNNCC 2 cut(s) 2069, 2218
NmuCI GTSAC 5 cut(s) 955, 1922, 2552, 3003, 3556
NsiI ATGCAT 2 cut(s) 2511, 2650
NspI RCATGY 3 cut(s) 131, 1843, 3527
NspV TTCGAA 1 cut(s) 3076
OliI CACNNNNGTG 1 cut(s) 2305
PagI TCATGA 3 cut(s) 265, 984, 1534
PauI GCGCGC 1 cut(s) 3204
PceI AGGCCT 1 cut(s) 359
PciI ACATGT 2 cut(s) 1839, 3523
PciSI GCTCTTC 2 cut(s) 162, 2949
PctI GAATGC 2 cut(s) 226, 585
PdmI GAANNNNTTC 2 cut(s) 2325, 2805
PfeI GAWTC 6 cut(s) 836, 2101, 2479, 3133, 3260, 3362
PflFI GACNNNGTC 1 cut(s) 338
PflMI CCANNNNNTGG 3 cut(s) 2227, 2474, 2946
PfoI TCCNGGA 1 cut(s) 2383
Ple19I CGATCG 1 cut(s) 433
PleI GAGTC 6 cut(s) 378, 467, 561, 2203, 2710, 3010
PpsI GAGTC 6 cut(s) 378, 467, 561, 2203, 2710, 3010
PpuMI RGGWCCY 1 cut(s) 2986
PscI ACATGT 2 cut(s) 1839, 3523
PshAI GACNNNNGTC 1 cut(s) 3563
PshBI ATTAAT 1 cut(s) 1364
PsiI TTATAA 1 cut(s) 2372
Psp5II RGGWCCY 1 cut(s) 2986
Psp6I CCWGG 3 cut(s) 153, 546, 3303
PspEI GGTNACC 1 cut(s) 1922
PspFI CCCAGC 1 cut(s) 1041
PspGI CCWGG 3 cut(s) 153, 546, 3303
PspN4I GGNNCC 2 cut(s) 2069, 2218
PspPI GGNCC 4 cut(s) 2986, 3545, 3569, 3606
PspPPI RGGWCCY 1 cut(s) 2986
PstI CTGCAG 2 cut(s) 726, 2343
PsuI RGATCY 5 cut(s) 241, 406, 771, 2216, 2868
PsyI GACNNNGTC 1 cut(s) 338
PteI GCGCGC 1 cut(s) 3204
PvuI CGATCG 1 cut(s) 433
PvuII CAGCTG 2 cut(s) 11, 2305
RsaI GTAC 6 cut(s) 1143, 1439, 2449, 2539, 2560, 3408
RsaNI GTAC 6 cut(s) 1142, 1438, 2448, 2538, 2559, 3407
RseI CAYNNNNRTG 3 cut(s) 1859, 2305, 2758
SapI GCTCTTC 2 cut(s) 162, 2949
Sau96I GGNCC 4 cut(s) 2986, 3545, 3569, 3606
ScaI AGTACT 1 cut(s) 1439
SchI GAGTC 6 cut(s) 379, 467, 562, 2204, 2710, 3011
ScrFI CCNGG 6 cut(s) 155, 548, 1061, 2385, 3305, 3605
SduI GDGCHC 6 cut(s) 145, 1048, 2410, 3153, 3200, 3531
SfaNI GCATC 8 cut(s) 71, 151, 223, 1228, 1863, 1995, 3290, 3454
SfcI CTRYAG 3 cut(s) 696, 722, 2339
SfuI TTCGAA 1 cut(s) 3076
SinI GGWCC 2 cut(s) 2986, 3545
SmiMI CAYNNNNRTG 3 cut(s) 1859, 2305, 2758
SmlI CTYRAG 5 cut(s) 144, 215, 2192, 2492, 3146
SmoI CTYRAG 5 cut(s) 144, 215, 2192, 2492, 3146
SpeI ACTAGT 1 cut(s) 455
SseBI AGGCCT 1 cut(s) 359
SsiI CCGC 8 cut(s) 68, 115, 929, 964, 1684, 2318, 2486, 3413
SspI AATATT 2 cut(s) 788, 1340
SspMI CTAG 4 cut(s) 59, 456, 1766, 2366
StuI AGGCCT 1 cut(s) 359
StyD4I CCNGG 6 cut(s) 153, 546, 1059, 2383, 3303, 3603
StyI CCWWGG 3 cut(s) 228, 2473, 3251
TaaI ACNGT 9 cut(s) 393, 700, 1717, 2336, 2431, 2447, 2558, 2674, 3023
TaiI ACGT 2 cut(s) 2269, 2317
TatI WGTACW 2 cut(s) 1437, 2447
TauI GCSGC 1 cut(s) 3415
TfiI GAWTC 6 cut(s) 836, 2101, 2479, 3133, 3260, 3362
TscAI CASTG 5 cut(s) 396, 712, 1205, 2901, 3012
TseFI GTSAC 5 cut(s) 955, 1922, 2552, 3003, 3556
Tsp45I GTSAC 5 cut(s) 955, 1922, 2552, 3003, 3556
TspGWI ACGGA 1 cut(s) 899
TspRI CASTG 5 cut(s) 396, 712, 1205, 2901, 3012
Tth111I GACNNNGTC 1 cut(s) 338
Van91I CCANNNNNTGG 3 cut(s) 2227, 2474, 2946
VpaK11BI GGWCC 2 cut(s) 2986, 3545
VspI ATTAAT 1 cut(s) 1364
XapI RAATTY 5 cut(s) 1316, 1611, 2611, 2770, 2805
XceI RCATGY 3 cut(s) 131, 1843, 3527
XcmI CCANNNNNNNNNTGG 1 cut(s) 3539
XmiI GTMKAC 1 cut(s) 1752
XmnI GAANNNNTTC 2 cut(s) 2325, 2805
XspI CTAG 4 cut(s) 59, 456, 1766, 2366
ZrmI AGTACT 1 cut(s) 1439
Zsp2I ATGCAT 2 cut(s) 2511, 2650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.