Rorug06G0047600

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000400
Physical Location & Seq
Reverse (-)
6269182 .. 6269682
501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0047600.1

Sequence Viewer

Length: 285 bp
ATGTGCTTAACGGATAACAATTTCAATAACTTGGTCACTGGTAATGTTGTGGACAAGTTACTACATGAATGGGGTTTGTGGGCTTTCGATTCGACTTCTACCACAACAGACGCTAATGGTTTCTTTGAGGCCTCCCTCTTCCACGGGGATTATGAAGTTAACATTACTCACCCCTCTGTCACAAATTCCTCCTTGGTTCACAGATTCAATGTGGCACCAAAATCTGAGTCCCAGGAACCATTGCAGCTTAAACTCTGTGTGAGAATACTCAATGAGGAATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 map03460
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

94

Amino Acids

10.57

Weight (kDa)

4.75

Isoelectric Point (pI)

31.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000400)

Species Orthologous Gene IDs
malus_domestica MD05G1050700.v1.1 MD05G1050800.v1.1 MD08G1110700.v1.1 MD15G1090000.v1.1 MD15G1090100.v1.1 MD15G1090300.v1.1
prunus_persica Prupe.1G541300_v2.0.a1 Prupe.1G541300_v2.0.a1 Prupe.8G077100_v2.0.a1 Prupe.8G077200_v2.0.a1 Prupe.8G077500_v2.0.a1 Prupe.8G077600_v2.0.a1 Prupe.8G211300_v2.0.a1
pyrus_communis pycom05g04280 pycom08g09220 pycom15g08440
rosa_chinensis RchiOBHm_Chr1g0348461 RchiOBHm_Chr1g0348561 RchiOBHm_Chr6g0269201 RchiOBHm_Chr6g0269411 RchiOBHm_Chr6g0269421 RchiOBHm_Chr6g0269431 RchiOBHm_Chr7g0232901 RchiOBHm_Chr7g0232931 RchiOBHm_Chr7g0232961 RchiOBHm_Chr7g0232971
rosa_laevigata RLG00000001310
rosa_multiflora Rmu_sc0000091.1_g000001 Rmu_sc0000091.1_g000002 Rmu_sc0000091.1_g000008 Rmu_sc0000743.1_g000003 Rmu_sc0000743.1_g000004 Rmu_sc0005353.1_g000002 Rmu_sc0008668.1_g000002 Rmu_sc0015938.1_g000001 Rmu_ssc0000018.1_g000023 Rmu_ssc0000291.1_g000019 Rmu_ssc0000291.1_g000020 Rmu_ssc0000291.1_g000026 Rmu_ssc0000291.1_g000027
rosa_roxburghii Rroxscaffold_3G00227800 Rroxscaffold_3G00227820 Rroxscaffold_4G00306930 Rroxscaffold_4G00306950 Rroxscaffold_7G00198730
rosa_rugosa Rorug01G0194900 Rorug01G0194900 Rorug01G0195000 Rorug01G0195100 Rorug06G0045900 Rorug06G0046100 Rorug06G0047500 Rorug06G0047500 Rorug06G0047600 Rorug06G0047700 Rorug07G0276400 Rorug07G0276600 Rorug07G0276800.1 Rorug07G0276900
rosa_samantha Rh1AG213000 Rh1AG213100 Rh1BG179500 Rh1CG197300 Rh1CG197400 Rh1DG209600 Rh6AG166200 Rh6AG168000 Rh6AG168100 Rh6AG168200 Rh6BG171700 Rh6BG171800 Rh6BG173500 Rh6CG165300 Rh6CG167500 Rh6CG167600 Rh6DG156900 Rh6DG159400 Rh6DG159500 Rh6DG159600 Rh7AG431600 Rh7AG431700 Rh7AG431800 Rh7AG432100 Rh7AG432200 Rh7BG404700 Rh7BG404800 Rh7BG404900 Rh7BG405000 Rh7CG450600 Rh7CG450700 Rh7CG450800 Rh7CG451200 Rh7DG421300
rosa_wichuraiana Rw0G004710 Rw0G010410 Rw1G018020 Rw1G018040 Rw6G014350 Rw6G014450 Rw6G014470 Rw7G035660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 214
AcsI RAATTY 1 cut(s) 184
AgsI TTSAA 2 cut(s) 25, 208
AjnI CCWGG 1 cut(s) 231
AluBI AGCT 1 cut(s) 247
AluI AGCT 1 cut(s) 247
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 244
ApoI RAATTY 1 cut(s) 184
ArsI GACNNNNNNTTYG 2 cut(s) 212, 244
AsuHPI GGTGA 1 cut(s) 161
BanI GGYRCC 1 cut(s) 214
BbvI GCAGC 1 cut(s) 256
BciT130I CCWGG 1 cut(s) 233
BfaI CTAG 1 cut(s) 283
BisI GCNGC 1 cut(s) 245
BlsI GCNGC 1 cut(s) 246
Bme1390I CCNGG 1 cut(s) 233
BmiI GGNNCC 2 cut(s) 216, 237
BmrFI CCNGG 1 cut(s) 233
BsaJI CCNNGG 3 cut(s) 142, 192, 231
Bse1I ACTGG 1 cut(s) 43
Bse3DI GCAATG 1 cut(s) 239
BseBI CCWGG 1 cut(s) 233
BseDI CCNNGG 3 cut(s) 142, 192, 231
BseMI GCAATG 1 cut(s) 239
BseMII CTCAG 1 cut(s) 216
BseNI ACTGG 1 cut(s) 43
BseXI GCAGC 1 cut(s) 256
BshFI GGCC 1 cut(s) 131
BshNI GGYRCC 1 cut(s) 214
BslFI GGGAC 1 cut(s) 214
BsmFI GGGAC 1 cut(s) 214
BsmI GAATGC 1 cut(s) 284
BsnI GGCC 1 cut(s) 131
BspANI GGCC 1 cut(s) 131
BspCNI CTCAG 1 cut(s) 217
BspLI GGNNCC 2 cut(s) 216, 237
BspT107I GGYRCC 1 cut(s) 214
BsrDI GCAATG 1 cut(s) 239
BsrI ACTGG 1 cut(s) 43
BssECI CCNNGG 3 cut(s) 142, 192, 231
BssT1I CCWWGG 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 233
Bst6I CTCTTC 1 cut(s) 143
BstDEI CTNAG 1 cut(s) 225
BstDSI CCRYGG 1 cut(s) 142
BstNI CCWGG 1 cut(s) 233
BstSCI CCNGG 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 256
BsuRI GGCC 1 cut(s) 131
BtgI CCRYGG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 36
CseI GACGC 1 cut(s) 119
CviAII CATG 1 cut(s) 65
CviJI RGCY 3 cut(s) 83, 131, 247
CviKI_1 RGCY 3 cut(s) 83, 131, 247
DdeI CTNAG 1 cut(s) 225
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 192
Eco147I AGGCCT 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 231
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 1 cut(s) 68
FaiI YATR 2 cut(s) 66, 153
FaqI GGGAC 1 cut(s) 214
FatI CATG 1 cut(s) 64
Fnu4HI GCNGC 1 cut(s) 245
Fsp4HI GCNGC 1 cut(s) 245
FspBI CTAG 1 cut(s) 283
GluI GCNGC 1 cut(s) 245
HaeIII GGCC 1 cut(s) 131
HgaI GACGC 1 cut(s) 119
Hin1II CATG 1 cut(s) 68
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 3 cut(s) 89, 204, 227
HpaI GTTAAC 1 cut(s) 160
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 3 cut(s) 52, 160, 199
Hpy188I TCNGA 1 cut(s) 226
Hpy8I GTNNAC 3 cut(s) 52, 160, 199
HpyCH4V TGCA 1 cut(s) 244
HpyF3I CTNAG 1 cut(s) 225
Hsp92II CATG 1 cut(s) 68
KspAI GTTAAC 1 cut(s) 160
LpnPI CCDG 3 cut(s) 24, 218, 245
Lsp1109I GCAGC 1 cut(s) 256
MaeI CTAG 1 cut(s) 283
MaeIII GTNAC 3 cut(s) 34, 57, 178
MboII GAAGA 1 cut(s) 130
MluCI AATT 2 cut(s) 19, 184
MlyI GAGTC 1 cut(s) 236
MnlI CCTC 6 cut(s) 121, 142, 146, 184, 199, 268
MseI TTAA 3 cut(s) 8, 159, 249
MspR9I CCNGG 1 cut(s) 233
Mva1269I GAATGC 1 cut(s) 284
MvaI CCWGG 1 cut(s) 233
NlaIII CATG 1 cut(s) 68
NlaIV GGNNCC 2 cut(s) 216, 237
NmuCI GTSAC 2 cut(s) 34, 178
PceI AGGCCT 1 cut(s) 131
PctI GAATGC 1 cut(s) 284
PfeI GAWTC 2 cut(s) 89, 204
PkrI GCNGC 1 cut(s) 246
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
Psp6I CCWGG 1 cut(s) 231
PspGI CCWGG 1 cut(s) 231
PspN4I GGNNCC 2 cut(s) 216, 237
SaqAI TTAA 3 cut(s) 8, 159, 249
SatI GCNGC 1 cut(s) 245
SchI GAGTC 1 cut(s) 236
ScrFI CCNGG 1 cut(s) 233
SetI ASST 1 cut(s) 249
SgeI CNNG 9 cut(s) 43, 51, 67, 77, 155, 157, 205, 244, 245
Sse9I AATT 2 cut(s) 19, 184
SseBI AGGCCT 1 cut(s) 131
SspMI CTAG 1 cut(s) 283
StuI AGGCCT 1 cut(s) 131
StyD4I CCNGG 1 cut(s) 231
StyI CCWWGG 1 cut(s) 192
TaqI TCGA 2 cut(s) 87, 92
TasI AATT 2 cut(s) 19, 184
TfiI GAWTC 2 cut(s) 89, 204
Tru1I TTAA 3 cut(s) 8, 159, 249
Tru9I TTAA 3 cut(s) 8, 159, 249
TscAI CASTG 1 cut(s) 43
TseFI GTSAC 2 cut(s) 34, 178
TseI GCWGC 1 cut(s) 244
Tsp45I GTSAC 2 cut(s) 34, 178
TspDTI ATGAA 2 cut(s) 81, 168
TspGWI ACGGA 1 cut(s) 26
TspRI CASTG 1 cut(s) 43
XapI RAATTY 1 cut(s) 184
XspI CTAG 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.