Rh7AG432200

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000400
Physical Location & Seq
Reverse (-)
58103856 .. 58111203
7348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG432200.1

Sequence Viewer

Length: 219 bp
ATGACACTGAATCTATCAAGTTGTAGTGAGCTCAAGGAGTTACCAAGAGGTACTACCAAGTTGAGAAATCTGAGACATCTTAACATAGATGATTGTCCAAGACTTGCTGGCATGCCACCATCAATGGGAATTTTACAACAACTTCAAACTTTGCCAGTATATATCGTCGGCCGCAACTTTGAAACTTCTATTTTTCAGCTCTCATCAATGAATCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 map03460
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

72

Amino Acids

8.1

Weight (kDa)

8.84

Isoelectric Point (pI)

62.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 2 - 65 6e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000400)

Species Orthologous Gene IDs
malus_domestica MD05G1050700.v1.1 MD05G1050800.v1.1 MD08G1110700.v1.1 MD15G1090000.v1.1 MD15G1090100.v1.1 MD15G1090300.v1.1
prunus_persica Prupe.1G541300_v2.0.a1 Prupe.1G541300_v2.0.a1 Prupe.8G077100_v2.0.a1 Prupe.8G077200_v2.0.a1 Prupe.8G077500_v2.0.a1 Prupe.8G077600_v2.0.a1 Prupe.8G211300_v2.0.a1
pyrus_communis pycom05g04280 pycom08g09220 pycom15g08440
rosa_chinensis RchiOBHm_Chr1g0348461 RchiOBHm_Chr1g0348561 RchiOBHm_Chr6g0269201 RchiOBHm_Chr6g0269411 RchiOBHm_Chr6g0269421 RchiOBHm_Chr6g0269431 RchiOBHm_Chr7g0232901 RchiOBHm_Chr7g0232931 RchiOBHm_Chr7g0232961 RchiOBHm_Chr7g0232971
rosa_laevigata RLG00000001310
rosa_multiflora Rmu_sc0000091.1_g000001 Rmu_sc0000091.1_g000002 Rmu_sc0000091.1_g000008 Rmu_sc0000743.1_g000003 Rmu_sc0000743.1_g000004 Rmu_sc0005353.1_g000002 Rmu_sc0008668.1_g000002 Rmu_sc0015938.1_g000001 Rmu_ssc0000018.1_g000023 Rmu_ssc0000291.1_g000019 Rmu_ssc0000291.1_g000020 Rmu_ssc0000291.1_g000026 Rmu_ssc0000291.1_g000027
rosa_roxburghii Rroxscaffold_3G00227800 Rroxscaffold_3G00227820 Rroxscaffold_4G00306930 Rroxscaffold_4G00306950 Rroxscaffold_7G00198730
rosa_rugosa Rorug01G0194900 Rorug01G0194900 Rorug01G0195000 Rorug01G0195100 Rorug06G0045900 Rorug06G0046100 Rorug06G0047500 Rorug06G0047500 Rorug06G0047600 Rorug06G0047700 Rorug07G0276400 Rorug07G0276600 Rorug07G0276800.1 Rorug07G0276900
rosa_samantha Rh1AG213000 Rh1AG213100 Rh1BG179500 Rh1CG197300 Rh1CG197400 Rh1DG209600 Rh6AG166200 Rh6AG168000 Rh6AG168100 Rh6AG168200 Rh6BG171700 Rh6BG171800 Rh6BG173500 Rh6CG165300 Rh6CG167500 Rh6CG167600 Rh6DG156900 Rh6DG159400 Rh6DG159500 Rh6DG159600 Rh7AG431600 Rh7AG431700 Rh7AG431800 Rh7AG432100 Rh7AG432200 Rh7BG404700 Rh7BG404800 Rh7BG404900 Rh7BG405000 Rh7CG450600 Rh7CG450700 Rh7CG450800 Rh7CG451200 Rh7DG421300
rosa_wichuraiana Rw0G004710 Rw0G010410 Rw1G018020 Rw1G018040 Rw6G014350 Rw6G014450 Rw6G014470 Rw7G035660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 172
AcoI YGGCCR 1 cut(s) 169
AcsI RAATTY 1 cut(s) 129
AfaI GTAC 1 cut(s) 52
AfiI CCNNNNNNNGG 1 cut(s) 125
AgsI TTSAA 2 cut(s) 146, 182
AluBI AGCT 2 cut(s) 31, 199
AluI AGCT 2 cut(s) 31, 199
Alw21I GWGCWC 1 cut(s) 33
Alw26I GTCTC 1 cut(s) 67
AoxI GGCC 1 cut(s) 169
ApoI RAATTY 1 cut(s) 129
BanII GRGCYC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 33
BccI CCATC 1 cut(s) 127
BcoDI GTCTC 1 cut(s) 67
BisI GCNGC 1 cut(s) 172
BlsI GCNGC 1 cut(s) 173
BpuEI CTTGAG 1 cut(s) 17
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 155
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 1 cut(s) 155
BseX3I CGGCCG 1 cut(s) 169
Bsh1285I CGRYCG 1 cut(s) 172
BshFI GGCC 1 cut(s) 171
BsiEI CGRYCG 1 cut(s) 172
BsiHKAI GWGCWC 1 cut(s) 33
BslI CCNNNNNNNGG 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 67
BsnI GGCC 1 cut(s) 171
Bsp1286I GDGCHC 1 cut(s) 33
BspACI CCGC 1 cut(s) 172
BspANI GGCC 1 cut(s) 171
BspCNI CTCAG 1 cut(s) 63
BsrI ACTGG 1 cut(s) 155
BstC8I GCNNGC 2 cut(s) 109, 113
BstDEI CTNAG 1 cut(s) 71
BstMAI GTCTC 1 cut(s) 67
BstMCI CGRYCG 1 cut(s) 172
BstNSI RCATGY 1 cut(s) 115
BstZI CGGCCG 1 cut(s) 169
BsuRI GGCC 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 5
Cac8I GCNNGC 2 cut(s) 109, 113
Csp6I GTAC 1 cut(s) 51
CviAII CATG 1 cut(s) 112
CviJI RGCY 3 cut(s) 31, 171, 199
CviKI_1 RGCY 3 cut(s) 31, 171, 199
CviQI GTAC 1 cut(s) 51
DdeI CTNAG 1 cut(s) 71
EaeI YGGCCR 1 cut(s) 169
EagI CGGCCG 1 cut(s) 169
Ecl136II GAGCTC 1 cut(s) 31
EclXI CGGCCG 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 33
Eco52I CGGCCG 1 cut(s) 169
Eco53kI GAGCTC 1 cut(s) 31
EcoICRI GAGCTC 1 cut(s) 31
EcoT38I GRGCYC 1 cut(s) 33
FaeI CATG 1 cut(s) 115
FaiI YATR 5 cut(s) 86, 113, 160, 162, 217
FatI CATG 1 cut(s) 111
Fnu4HI GCNGC 1 cut(s) 172
FriOI GRGCYC 1 cut(s) 33
Fsp4HI GCNGC 1 cut(s) 172
GluI GCNGC 1 cut(s) 172
HaeIII GGCC 1 cut(s) 171
Hin1II CATG 1 cut(s) 115
HinfI GANTC 2 cut(s) 10, 211
Hpy188I TCNGA 1 cut(s) 72
Hpy99I CGWCG 1 cut(s) 170
HpyF3I CTNAG 1 cut(s) 71
Hsp92II CATG 1 cut(s) 115
LpnPI CCDG 2 cut(s) 93, 168
MaeIII GTNAC 1 cut(s) 39
MhlI GDGCHC 1 cut(s) 33
MluCI AATT 1 cut(s) 129
MnlI CCTC 1 cut(s) 41
MseI TTAA 1 cut(s) 81
NlaIII CATG 1 cut(s) 115
NspI RCATGY 1 cut(s) 115
PaeI GCATGC 1 cut(s) 115
PfeI GAWTC 2 cut(s) 10, 211
PkrI GCNGC 1 cut(s) 173
Psp124BI GAGCTC 1 cut(s) 33
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
SacI GAGCTC 1 cut(s) 33
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 1 cut(s) 172
SduI GDGCHC 1 cut(s) 33
SetI ASST 3 cut(s) 33, 52, 201
SgeI CNNG 9 cut(s) 30, 46, 57, 70, 111, 116, 120, 124, 167
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
SphI GCATGC 1 cut(s) 115
Sse9I AATT 1 cut(s) 129
SsiI CCGC 1 cut(s) 172
SstI GAGCTC 1 cut(s) 33
TasI AATT 1 cut(s) 129
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 2 cut(s) 10, 211
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TscAI CASTG 1 cut(s) 12
TspRI CASTG 1 cut(s) 12
XapI RAATTY 1 cut(s) 129
XceI RCATGY 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.