Rh7BG404800

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000400
Physical Location & Seq
Reverse (-)
45310204 .. 45311274
1071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG404800.1

Sequence Viewer

Length: 1071 bp
ATGGAGTCTTTGATTGTATCTCCGATGGTAGAGGTGCTCTTTGGAAGGTTGGCTAACACTGTTGTTGGTGAAGTGCGAACTCGCAGAGAGTTTAAGATGGAGATCGAGAAGATGCGGGAGACGTTACCGGTGATTCAAGCGGTGATAGAAGATGCAGAGGAGCAGCAGAGGAAAAATAAGATGGTCAGGACTTGGCTGGCAAAGCTCAAAGACGTCGCAGTTGATGCTGATGATCTGCTTGATGAGGTTGCCACCCTAGCTCTGCGCAAGCATTTGATGAAAGAGGAATTTTACCGATCATGGTTTCCCTCCCAATATCTCCAACGACGGTATATTGAAGCTGTCGAGCGGAACGCCATAATTCACTACATATTTTACCAACAACTTGAGGAGCATTTTCGTTCACAGTCTAATCTGAACAACAAGGAGAGAAGAACTATGATAGTGAGAAAGATCGGAGCGTGGACAAGATATGAGGTCAGGAAAACTTGCTTAACTCTTGAATCGATTTCTACTTACCGTAAGAAGTCACGCAAACTAAAGGAGCTTCGTGCAAGATTGGATGATGTAGCCAAGGAAATGTCTAGTTTCCAGTTCAAAGAAACTCCTTCGTATGGACGGTCAAGTACCATGGAGAGACGAGAAACTGGACCCTCTGTCAATGAGTCAAAGGTTTATGGCAGAGAAGATGATGTGGATAAGATTGTGGGGATGCTATTGTCTTCCAGTAGTGGTCCTGAAGTTGAAGTAATTCCCATTGTTGGAATTGGAGGGATGGGGAAAACAACACTCGCTCAGGTAGTCTATAATGATCCGAGGGTTACAAGCCAGTTTCAGTCTTTGATGTGGGTGTCCGTTAATGATAATTTTAACCCGGCAAGGATCATAAATCAAATATTGTGTTATGTCAGAGGGGGTAGCCATGACTCGTTTCAGATTGGGGTGCTGCAATCTCAATTGAGAGAATCCTTACTGGGAAAAAGATATTTAATAGTACTCGATGATGTGTGGAATGAGGATCCAGATGAATGGGATAAAGTAATGAATCCATTGAAAGGCTCGGCAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 map03460
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

356

Amino Acids

41.26

Weight (kDa)

8.63

Isoelectric Point (pI)

47.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 10 - 92 2.5e-22 Rx N-terminal domain
NB-ARC PF00931 228 - 352 2.1e-26 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000400)

Species Orthologous Gene IDs
malus_domestica MD05G1050700.v1.1 MD05G1050800.v1.1 MD08G1110700.v1.1 MD15G1090000.v1.1 MD15G1090100.v1.1 MD15G1090300.v1.1
prunus_persica Prupe.1G541300_v2.0.a1 Prupe.1G541300_v2.0.a1 Prupe.8G077100_v2.0.a1 Prupe.8G077200_v2.0.a1 Prupe.8G077500_v2.0.a1 Prupe.8G077600_v2.0.a1 Prupe.8G211300_v2.0.a1
pyrus_communis pycom05g04280 pycom08g09220 pycom15g08440
rosa_chinensis RchiOBHm_Chr1g0348461 RchiOBHm_Chr1g0348561 RchiOBHm_Chr6g0269201 RchiOBHm_Chr6g0269411 RchiOBHm_Chr6g0269421 RchiOBHm_Chr6g0269431 RchiOBHm_Chr7g0232901 RchiOBHm_Chr7g0232931 RchiOBHm_Chr7g0232961 RchiOBHm_Chr7g0232971
rosa_laevigata RLG00000001310
rosa_multiflora Rmu_sc0000091.1_g000001 Rmu_sc0000091.1_g000002 Rmu_sc0000091.1_g000008 Rmu_sc0000743.1_g000003 Rmu_sc0000743.1_g000004 Rmu_sc0005353.1_g000002 Rmu_sc0008668.1_g000002 Rmu_sc0015938.1_g000001 Rmu_ssc0000018.1_g000023 Rmu_ssc0000291.1_g000019 Rmu_ssc0000291.1_g000020 Rmu_ssc0000291.1_g000026 Rmu_ssc0000291.1_g000027
rosa_roxburghii Rroxscaffold_3G00227800 Rroxscaffold_3G00227820 Rroxscaffold_4G00306930 Rroxscaffold_4G00306950 Rroxscaffold_7G00198730
rosa_rugosa Rorug01G0194900 Rorug01G0194900 Rorug01G0195000 Rorug01G0195100 Rorug06G0045900 Rorug06G0046100 Rorug06G0047500 Rorug06G0047500 Rorug06G0047600 Rorug06G0047700 Rorug07G0276400 Rorug07G0276600 Rorug07G0276800.1 Rorug07G0276900
rosa_samantha Rh1AG213000 Rh1AG213100 Rh1BG179500 Rh1CG197300 Rh1CG197400 Rh1DG209600 Rh6AG166200 Rh6AG168000 Rh6AG168100 Rh6AG168200 Rh6BG171700 Rh6BG171800 Rh6BG173500 Rh6CG165300 Rh6CG167500 Rh6CG167600 Rh6DG156900 Rh6DG159400 Rh6DG159500 Rh6DG159600 Rh7AG431600 Rh7AG431700 Rh7AG431800 Rh7AG432100 Rh7AG432200 Rh7BG404700 Rh7BG404800 Rh7BG404900 Rh7BG405000 Rh7CG450600 Rh7CG450700 Rh7CG450800 Rh7CG451200 Rh7DG421300
rosa_wichuraiana Rw0G004710 Rw0G010410 Rw1G018020 Rw1G018040 Rw6G014350 Rw6G014450 Rw6G014470 Rw7G035660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 216
Acc16I TGCGCA 1 cut(s) 266
Acc36I ACCTGC 1 cut(s) 1055
AccBSI CCGCTC 1 cut(s) 349
AciI CCGC 3 cut(s) 115, 140, 349
AclWI GGATC 4 cut(s) 806, 890, 1013, 1026
AcsI RAATTY 1 cut(s) 287
AcuI CTGAAG 1 cut(s) 759
AcyI GRCGYC 1 cut(s) 213
AfaI GTAC 2 cut(s) 628, 996
AfiI CCNNNNNNNGG 3 cut(s) 614, 761, 1055
AgeI ACCGGT 1 cut(s) 127
AgsI TTSAA 6 cut(s) 137, 338, 503, 598, 746, 1054
AhdI GACNNNNNGTC 1 cut(s) 656
AluBI AGCT 4 cut(s) 205, 260, 341, 547
AluI AGCT 4 cut(s) 205, 260, 341, 547
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 2 cut(s) 113, 631
AlwI GGATC 4 cut(s) 806, 890, 1013, 1026
ApeKI GCWGC 2 cut(s) 163, 946
ApoI RAATTY 1 cut(s) 287
AsiGI ACCGGT 1 cut(s) 127
Asp700I GAANNNNTTC 1 cut(s) 750
AspLEI GCGC 1 cut(s) 267
AspS9I GGNCC 2 cut(s) 650, 734
AsuC2I CCSGG 1 cut(s) 875
AsuHPI GGTGA 3 cut(s) 80, 142, 154
AvaII GGWCC 2 cut(s) 650, 734
BamHI GGATCC 1 cut(s) 1018
BbsI GAAGAC 1 cut(s) 714
Bbv12I GWGCWC 1 cut(s) 39
BbvI GCAGC 2 cut(s) 175, 933
BccI CCATC 4 cut(s) 19, 91, 175, 769
BcnI CCSGG 1 cut(s) 875
BcoDI GTCTC 2 cut(s) 113, 631
BfaI CTAG 2 cut(s) 257, 585
BfuAI ACCTGC 1 cut(s) 1055
BisI GCNGC 2 cut(s) 164, 947
BlsI GCNGC 2 cut(s) 165, 948
BmcAI AGTACT 1 cut(s) 996
Bme1390I CCNGG 1 cut(s) 875
Bme18I GGWCC 2 cut(s) 650, 734
BmeRI GACNNNNNGTC 1 cut(s) 656
BmgT120I GGNCC 2 cut(s) 650, 734
BmiI GGNNCC 2 cut(s) 652, 1020
BmrFI CCNGG 1 cut(s) 875
BmrI ACTGGG 1 cut(s) 983
BmsI GCATC 4 cut(s) 102, 142, 214, 702
BmuI ACTGGG 1 cut(s) 983
BpiI GAAGAC 1 cut(s) 714
Bpu10I CCTNAGC 1 cut(s) 795
BpuEI CTTGAG 1 cut(s) 407
BpuMI CCSGG 1 cut(s) 875
Bsa29I ATCGAT 1 cut(s) 506
BsaBI GATNNNNATC 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 213
BsaJI CCNNGG 3 cut(s) 573, 630, 815
BsaWI WCCGGW 1 cut(s) 127
Bsc4I CCNNNNNNNGG 3 cut(s) 614, 761, 1055
Bse118I RCCGGY 1 cut(s) 127
Bse1I ACTGG 5 cut(s) 592, 652, 726, 829, 978
Bse8I GATNNNNATC 1 cut(s) 101
BseCI ATCGAT 1 cut(s) 506
BseDI CCNNGG 3 cut(s) 573, 630, 815
BseGI GGATG 3 cut(s) 568, 717, 780
BseJI GATNNNNATC 1 cut(s) 101
BseLI CCNNNNNNNGG 3 cut(s) 614, 761, 1055
BseMII CTCAG 1 cut(s) 809
BseNI ACTGG 5 cut(s) 592, 652, 726, 829, 978
BseRI GAGGAG 2 cut(s) 173, 404
BseXI GCAGC 2 cut(s) 175, 933
BshTI ACCGGT 1 cut(s) 127
BshVI ATCGAT 1 cut(s) 506
BsiHKAI GWGCWC 1 cut(s) 39
BsiSI CCGG 2 cut(s) 128, 875
BslI CCNNNNNNNGG 3 cut(s) 614, 761, 1055
BsmAI GTCTC 2 cut(s) 113, 631
BsmBI CGTCTC 2 cut(s) 113, 631
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 7 cut(s) 102, 232, 296, 453, 811, 882, 1018
Bsp19I CCATGG 1 cut(s) 630
BspACI CCGC 3 cut(s) 115, 140, 349
BspCNI CTCAG 1 cut(s) 808
BspDI ATCGAT 1 cut(s) 506
BspLI GGNNCC 2 cut(s) 652, 1020
BspMI ACCTGC 1 cut(s) 1055
BspPI GGATC 4 cut(s) 806, 890, 1013, 1026
BsrBI CCGCTC 1 cut(s) 349
BsrFI RCCGGY 1 cut(s) 127
BsrI ACTGG 5 cut(s) 592, 652, 726, 829, 978
BssAI RCCGGY 1 cut(s) 127
BssECI CCNNGG 3 cut(s) 573, 630, 815
BssMI GATC 7 cut(s) 102, 232, 296, 453, 811, 882, 1018
BssNI GRCGYC 1 cut(s) 213
BssT1I CCWWGG 2 cut(s) 573, 630
Bst4CI ACNGT 5 cut(s) 61, 330, 408, 521, 621
BstACI GRCGYC 1 cut(s) 213
BstAPI GCANNNNNTGC 1 cut(s) 224
BstC8I GCNNGC 2 cut(s) 198, 269
BstDEI CTNAG 1 cut(s) 795
BstDSI CCRYGG 1 cut(s) 630
BstF5I GGATG 3 cut(s) 568, 717, 780
BstHHI GCGC 1 cut(s) 267
BstKTI GATC 7 cut(s) 105, 235, 299, 456, 814, 885, 1021
BstMAI GTCTC 2 cut(s) 113, 631
BstMBI GATC 7 cut(s) 102, 232, 296, 453, 811, 882, 1018
BstMWI GCNNNNNNNGC 3 cut(s) 202, 224, 257
BstSCI CCNGG 1 cut(s) 873
BstV1I GCAGC 2 cut(s) 175, 933
BstV2I GAAGAC 1 cut(s) 714
BstX2I RGATCY 1 cut(s) 1018
BstXI CCANNNNNNTGG 1 cut(s) 1029
BstYI RGATCY 1 cut(s) 1018
Bsu15I ATCGAT 1 cut(s) 506
BsuTUI ATCGAT 1 cut(s) 506
BtgI CCRYGG 1 cut(s) 630
BtsCI GGATG 3 cut(s) 568, 717, 780
BtsIMutI CAGTG 1 cut(s) 57
BveI ACCTGC 1 cut(s) 1055
Cac8I GCNNGC 2 cut(s) 198, 269
CfoI GCGC 1 cut(s) 267
Cfr10I RCCGGY 1 cut(s) 127
Cfr13I GGNCC 2 cut(s) 650, 734
ClaI ATCGAT 1 cut(s) 506
Csp6I GTAC 2 cut(s) 627, 995
CspAI ACCGGT 1 cut(s) 127
CviAII CATG 3 cut(s) 300, 631, 923
CviQI GTAC 2 cut(s) 627, 995
DdeI CTNAG 1 cut(s) 795
DpnI GATC 7 cut(s) 104, 234, 298, 455, 813, 884, 1020
DpnII GATC 7 cut(s) 102, 232, 296, 453, 811, 882, 1018
DriI GACNNNNNGTC 1 cut(s) 656
Eam1105I GACNNNNNGTC 1 cut(s) 656
Eco130I CCWWGG 2 cut(s) 573, 630
Eco47I GGWCC 2 cut(s) 650, 734
Eco57I CTGAAG 1 cut(s) 759
EcoT14I CCWWGG 2 cut(s) 573, 630
ErhI CCWWGG 2 cut(s) 573, 630
Esp3I CGTCTC 2 cut(s) 113, 631
FaeI CATG 3 cut(s) 303, 634, 926
FatI CATG 3 cut(s) 299, 630, 922
FauI CCCGC 1 cut(s) 108
Fnu4HI GCNGC 2 cut(s) 164, 947
FokI GGATG 3 cut(s) 575, 724, 787
Fsp4HI GCNGC 2 cut(s) 164, 947
FspBI CTAG 2 cut(s) 257, 585
FspI TGCGCA 1 cut(s) 266
GlaI GCGC 1 cut(s) 266
GluI GCNGC 2 cut(s) 164, 947
HapII CCGG 2 cut(s) 128, 875
HhaI GCGC 1 cut(s) 267
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 3 cut(s) 303, 634, 926
Hin6I GCGC 1 cut(s) 265
HinP1I GCGC 1 cut(s) 265
HinfI GANTC 7 cut(s) 5, 133, 503, 665, 926, 965, 1045
HpaII CCGG 2 cut(s) 128, 875
HphI GGTGA 3 cut(s) 80, 142, 154
Hpy166II GTNNAC 2 cut(s) 404, 465
Hpy188I TCNGA 6 cut(s) 24, 417, 458, 816, 911, 936
Hpy188III TCNNGA 6 cut(s) 106, 187, 481, 500, 737, 1022
Hpy8I GTNNAC 2 cut(s) 404, 465
Hpy99I CGWCG 2 cut(s) 218, 330
HpyAV CCTTC 2 cut(s) 39, 618
HpyCH4III ACNGT 5 cut(s) 61, 330, 408, 521, 621
HpyCH4IV ACGT 2 cut(s) 122, 213
HpyCH4V TGCA 3 cut(s) 155, 554, 949
HpyF10VI GCNNNNNNNGC 3 cut(s) 202, 224, 257
HpyF3I CTNAG 1 cut(s) 795
HpySE526I ACGT 2 cut(s) 122, 213
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 3 cut(s) 303, 634, 926
HspAI GCGC 1 cut(s) 265
Kzo9I GATC 7 cut(s) 102, 232, 296, 453, 811, 882, 1018
LmnI GCTCC 4 cut(s) 160, 391, 458, 544
Lsp1109I GCAGC 2 cut(s) 175, 933
LweI GCATC 4 cut(s) 102, 142, 214, 702
MaeI CTAG 2 cut(s) 257, 585
MaeII ACGT 2 cut(s) 122, 213
MaeIII GTNAC 3 cut(s) 123, 528, 820
MalI GATC 7 cut(s) 104, 234, 298, 455, 813, 884, 1020
MbiI CCGCTC 1 cut(s) 349
MboI GATC 7 cut(s) 102, 232, 296, 453, 811, 882, 1018
MboII GAAGA 5 cut(s) 121, 161, 444, 698, 714
MfeI CAATTG 1 cut(s) 956
MflI RGATCY 1 cut(s) 1018
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 6 cut(s) 287, 360, 750, 765, 865, 956
MlyI GAGTC 3 cut(s) 14, 674, 920
MmeI TCCRAC 2 cut(s) 346, 742
MroXI GAANNNNTTC 1 cut(s) 750
MseI TTAA 5 cut(s) 93, 494, 858, 870, 989
MspI CCGG 2 cut(s) 128, 875
MspR9I CCNGG 1 cut(s) 875
MunI CAATTG 1 cut(s) 956
MwoI GCNNNNNNNGC 3 cut(s) 202, 224, 257
NciI CCSGG 1 cut(s) 875
NcoI CCATGG 1 cut(s) 630
NdeII GATC 7 cut(s) 102, 232, 296, 453, 811, 882, 1018
NlaIII CATG 3 cut(s) 303, 634, 926
NlaIV GGNNCC 2 cut(s) 652, 1020
NmeAIII GCCGAG 1 cut(s) 1040
NmuCI GTSAC 1 cut(s) 528
NsbI TGCGCA 1 cut(s) 266
PdmI GAANNNNTTC 1 cut(s) 750
PfeI GAWTC 4 cut(s) 133, 503, 965, 1045
PinAI ACCGGT 1 cut(s) 127
PkrI GCNGC 2 cut(s) 165, 948
PleI GAGTC 3 cut(s) 13, 673, 920
PpsI GAGTC 3 cut(s) 13, 673, 920
PspN4I GGNNCC 2 cut(s) 652, 1020
PspPI GGNCC 2 cut(s) 650, 734
PsuI RGATCY 1 cut(s) 1018
RsaI GTAC 2 cut(s) 628, 996
RsaNI GTAC 2 cut(s) 627, 995
SaqAI TTAA 5 cut(s) 93, 494, 858, 870, 989
SatI GCNGC 2 cut(s) 164, 947
Sau3AI GATC 7 cut(s) 102, 232, 296, 453, 811, 882, 1018
Sau96I GGNCC 2 cut(s) 650, 734
ScaI AGTACT 1 cut(s) 996
SchI GAGTC 3 cut(s) 14, 674, 920
ScrFI CCNGG 1 cut(s) 875
SduI GDGCHC 1 cut(s) 39
SfaNI GCATC 4 cut(s) 102, 142, 214, 702
SinI GGWCC 2 cut(s) 650, 734
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
Sse9I AATT 6 cut(s) 287, 360, 750, 765, 865, 956
SsiI CCGC 3 cut(s) 115, 140, 349
SspI AATATT 1 cut(s) 897
SspMI CTAG 2 cut(s) 257, 585
StyD4I CCNGG 1 cut(s) 873
StyI CCWWGG 2 cut(s) 573, 630
TaaI ACNGT 5 cut(s) 61, 330, 408, 521, 621
TaiI ACGT 2 cut(s) 125, 216
TaqI TCGA 4 cut(s) 105, 345, 506, 999
TasI AATT 6 cut(s) 287, 360, 750, 765, 865, 956
TatI WGTACW 1 cut(s) 994
TfiI GAWTC 4 cut(s) 133, 503, 965, 1045
Tru1I TTAA 5 cut(s) 93, 494, 858, 870, 989
Tru9I TTAA 5 cut(s) 93, 494, 858, 870, 989
TscAI CASTG 1 cut(s) 64
TseFI GTSAC 1 cut(s) 528
TseI GCWGC 2 cut(s) 163, 946
Tsp45I GTSAC 1 cut(s) 528
TspDTI ATGAA 3 cut(s) 293, 1041, 1058
TspGWI ACGGA 1 cut(s) 844
TspRI CASTG 1 cut(s) 64
VpaK11BI GGWCC 2 cut(s) 650, 734
XapI RAATTY 1 cut(s) 287
XmnI GAANNNNTTC 1 cut(s) 750
XspI CTAG 2 cut(s) 257, 585
ZraI GACGTC 1 cut(s) 214
ZrmI AGTACT 1 cut(s) 996
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.