Rh7CG450800

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000400
Physical Location & Seq
Reverse (-)
59292821 .. 59293411
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG450800.1

Sequence Viewer

Length: 591 bp
ATGCAGGAGATGTTACCGGTGATTCAAGCAGTGATAGAGGATGCACAGGAGCAGCAGAGGAAAAATAAGAAGGTGAGGACTTGGCTGGCAAAGCTCAAAGACGTTGCAGTAGATGCTGATGATCTGCTTGATGAGGTTGCCACTCTAGTTCTACGCAAGAATTTCATGAAAAAGGAATTTCGCGAACCAGGTGCTGATACCAGATATGTTTTCCTACTAAAGCTTATTGCAGCACAGGAAGAGTTTGACAGCGAAAGTATTCGAATACTGCTTCATGTGGGAATTGGAAATCAGTCTCCTTCCTCGGATAGGAGCATGCAGCTGAGGATTAGTATGATTCTGAGAGAAATTGAAGCTACACAAAATACTTACACGGGAGAGGGCAAAATCAAGATGCTTCAGGCGATACTTTATACCAAACTTTATAGACTTGATTCACGTCCGAATGTGAACATGAAGGACAGGATTAGTATGATAGTGAGAAAGATTGGAGAGCGGACCAGATATGAGGTAAGGAAAACTAGCTTAACTCTTGAATCAATATCTACCTACCGTAAAAAGTGTTGGGTGTGTGGATCCGATTCCACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 map03460
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

196

Amino Acids

22.72

Weight (kDa)

9.39

Isoelectric Point (pI)

36.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 1 - 55 6.6e-15 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000400)

Species Orthologous Gene IDs
malus_domestica MD05G1050700.v1.1 MD05G1050800.v1.1 MD08G1110700.v1.1 MD15G1090000.v1.1 MD15G1090100.v1.1 MD15G1090300.v1.1
prunus_persica Prupe.1G541300_v2.0.a1 Prupe.1G541300_v2.0.a1 Prupe.8G077100_v2.0.a1 Prupe.8G077200_v2.0.a1 Prupe.8G077500_v2.0.a1 Prupe.8G077600_v2.0.a1 Prupe.8G211300_v2.0.a1
pyrus_communis pycom05g04280 pycom08g09220 pycom15g08440
rosa_chinensis RchiOBHm_Chr1g0348461 RchiOBHm_Chr1g0348561 RchiOBHm_Chr6g0269201 RchiOBHm_Chr6g0269411 RchiOBHm_Chr6g0269421 RchiOBHm_Chr6g0269431 RchiOBHm_Chr7g0232901 RchiOBHm_Chr7g0232931 RchiOBHm_Chr7g0232961 RchiOBHm_Chr7g0232971
rosa_laevigata RLG00000001310
rosa_multiflora Rmu_sc0000091.1_g000001 Rmu_sc0000091.1_g000002 Rmu_sc0000091.1_g000008 Rmu_sc0000743.1_g000003 Rmu_sc0000743.1_g000004 Rmu_sc0005353.1_g000002 Rmu_sc0008668.1_g000002 Rmu_sc0015938.1_g000001 Rmu_ssc0000018.1_g000023 Rmu_ssc0000291.1_g000019 Rmu_ssc0000291.1_g000020 Rmu_ssc0000291.1_g000026 Rmu_ssc0000291.1_g000027
rosa_roxburghii Rroxscaffold_3G00227800 Rroxscaffold_3G00227820 Rroxscaffold_4G00306930 Rroxscaffold_4G00306950 Rroxscaffold_7G00198730
rosa_rugosa Rorug01G0194900 Rorug01G0194900 Rorug01G0195000 Rorug01G0195100 Rorug06G0045900 Rorug06G0046100 Rorug06G0047500 Rorug06G0047500 Rorug06G0047600 Rorug06G0047700 Rorug07G0276400 Rorug07G0276600 Rorug07G0276800.1 Rorug07G0276900
rosa_samantha Rh1AG213000 Rh1AG213100 Rh1BG179500 Rh1CG197300 Rh1CG197400 Rh1DG209600 Rh6AG166200 Rh6AG168000 Rh6AG168100 Rh6AG168200 Rh6BG171700 Rh6BG171800 Rh6BG173500 Rh6CG165300 Rh6CG167500 Rh6CG167600 Rh6DG156900 Rh6DG159400 Rh6DG159500 Rh6DG159600 Rh7AG431600 Rh7AG431700 Rh7AG431800 Rh7AG432100 Rh7AG432200 Rh7BG404700 Rh7BG404800 Rh7BG404900 Rh7BG405000 Rh7CG450600 Rh7CG450700 Rh7CG450800 Rh7CG451200 Rh7DG421300
rosa_wichuraiana Rw0G004710 Rw0G010410 Rw1G018020 Rw1G018040 Rw6G014350 Rw6G014450 Rw6G014470 Rw7G035660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 496
AccII CGCG 1 cut(s) 183
AciI CCGC 1 cut(s) 496
AclWI GGATC 2 cut(s) 570, 583
AcsI RAATTY 2 cut(s) 160, 176
AcuI CTGAAG 1 cut(s) 383
AfiI CCNNNNNNNGG 1 cut(s) 309
AgeI ACCGGT 1 cut(s) 16
AgsI TTSAA 3 cut(s) 26, 353, 536
AjiI CACGTC 1 cut(s) 440
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 5 cut(s) 94, 223, 322, 356, 525
AluI AGCT 5 cut(s) 94, 223, 322, 356, 525
Alw26I GTCTC 1 cut(s) 300
AlwI GGATC 2 cut(s) 570, 583
AlwNI CAGNNNCTG 1 cut(s) 194
ApeKI GCWGC 3 cut(s) 52, 230, 319
ApoI RAATTY 2 cut(s) 160, 176
AsiGI ACCGGT 1 cut(s) 16
Asp700I GAANNNNTTC 1 cut(s) 258
AspS9I GGNCC 1 cut(s) 498
AsuHPI GGTGA 2 cut(s) 31, 85
AsuII TTCGAA 1 cut(s) 262
AvaII GGWCC 1 cut(s) 498
BamHI GGATCC 1 cut(s) 575
BbvCI CCTCAGC 1 cut(s) 323
BbvI GCAGC 3 cut(s) 64, 242, 331
BcgI CGANNNNNNTGC 2 cut(s) 173, 207
BciT130I CCWGG 1 cut(s) 189
BcoDI GTCTC 1 cut(s) 300
BfaI CTAG 2 cut(s) 146, 522
BisI GCNGC 3 cut(s) 53, 231, 320
BlsI GCNGC 3 cut(s) 54, 232, 321
Bme1390I CCNGG 1 cut(s) 189
Bme18I GGWCC 1 cut(s) 498
BmgBI CACGTC 1 cut(s) 440
BmgT120I GGNCC 1 cut(s) 498
BmiI GGNNCC 1 cut(s) 577
BmrFI CCNGG 1 cut(s) 189
BmsI GCATC 3 cut(s) 31, 103, 384
Bpu10I CCTNAGC 1 cut(s) 323
Bpu14I TTCGAA 1 cut(s) 262
BsaJI CCNNGG 1 cut(s) 303
BsaWI WCCGGW 1 cut(s) 16
Bsc4I CCNNNNNNNGG 1 cut(s) 309
Bse118I RCCGGY 1 cut(s) 16
BseBI CCWGG 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 303
BseGI GGATG 1 cut(s) 46
BseLI CCNNNNNNNGG 1 cut(s) 309
BseMII CTCAG 2 cut(s) 314, 332
BseXI GCAGC 3 cut(s) 64, 242, 331
Bsh1236I CGCG 1 cut(s) 183
BshTI ACCGGT 1 cut(s) 16
BsiSI CCGG 1 cut(s) 17
BslI CCNNNNNNNGG 1 cut(s) 309
BsmAI GTCTC 1 cut(s) 300
Bsp119I TTCGAA 1 cut(s) 262
Bsp143I GATC 2 cut(s) 121, 575
Bsp68I TCGCGA 1 cut(s) 183
BspACI CCGC 1 cut(s) 496
BspCNI CTCAG 2 cut(s) 315, 333
BspFNI CGCG 1 cut(s) 183
BspHI TCATGA 1 cut(s) 165
BspLI GGNNCC 1 cut(s) 577
BspPI GGATC 2 cut(s) 570, 583
BspT104I TTCGAA 1 cut(s) 262
BsrBI CCGCTC 1 cut(s) 496
BsrFI RCCGGY 1 cut(s) 16
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 2 cut(s) 121, 575
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 554
Bst6I CTCTTC 1 cut(s) 234
BstAPI GCANNNNNTGC 1 cut(s) 113
BstBI TTCGAA 1 cut(s) 262
BstC8I GCNNGC 2 cut(s) 87, 317
BstDEI CTNAG 2 cut(s) 323, 341
BstENI CCTNNNNNAGG 1 cut(s) 307
BstF5I GGATG 1 cut(s) 46
BstFNI CGCG 1 cut(s) 183
BstKTI GATC 2 cut(s) 124, 578
BstMAI GTCTC 1 cut(s) 300
BstMBI GATC 2 cut(s) 121, 575
BstMWI GCNNNNNNNGC 2 cut(s) 91, 113
BstNI CCWGG 1 cut(s) 189
BstNSI RCATGY 1 cut(s) 319
BstSCI CCNGG 1 cut(s) 187
BstUI CGCG 1 cut(s) 183
BstV1I GCAGC 3 cut(s) 64, 242, 331
BstX2I RGATCY 1 cut(s) 575
BstYI RGATCY 1 cut(s) 575
BtrI CACGTC 1 cut(s) 440
BtsCI GGATG 1 cut(s) 46
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 36
BtuMI TCGCGA 1 cut(s) 183
Cac8I GCNNGC 2 cut(s) 87, 317
CaiI CAGNNNCTG 1 cut(s) 194
CciI TCATGA 1 cut(s) 165
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 498
CsiI ACCWGGT 1 cut(s) 187
CspAI ACCGGT 1 cut(s) 16
CviAII CATG 4 cut(s) 166, 275, 316, 454
CviJI RGCY 6 cut(s) 85, 94, 223, 322, 356, 525
CviKI_1 RGCY 6 cut(s) 85, 94, 223, 322, 356, 525
DdeI CTNAG 2 cut(s) 323, 341
DpnI GATC 2 cut(s) 123, 577
DpnII GATC 2 cut(s) 121, 575
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco47I GGWCC 1 cut(s) 498
Eco57I CTGAAG 1 cut(s) 383
EcoNI CCTNNNNNAGG 1 cut(s) 307
EcoRII CCWGG 1 cut(s) 187
FaeI CATG 4 cut(s) 169, 278, 319, 457
FatI CATG 4 cut(s) 165, 274, 315, 453
Fnu4HI GCNGC 3 cut(s) 53, 231, 320
FokI GGATG 1 cut(s) 53
Fsp4HI GCNGC 3 cut(s) 53, 231, 320
FspBI CTAG 2 cut(s) 146, 522
GluI GCNGC 3 cut(s) 53, 231, 320
HapII CCGG 1 cut(s) 17
Hin1II CATG 4 cut(s) 169, 278, 319, 457
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 5 cut(s) 22, 337, 434, 536, 581
HpaII CCGG 1 cut(s) 17
HphI GGTGA 2 cut(s) 31, 85
Hpy166II GTNNAC 1 cut(s) 451
Hpy188I TCNGA 4 cut(s) 307, 342, 444, 580
Hpy188III TCNNGA 4 cut(s) 166, 182, 391, 533
Hpy8I GTNNAC 1 cut(s) 451
HpyAV CCTTC 3 cut(s) 64, 309, 451
HpyCH4III ACNGT 1 cut(s) 554
HpyCH4IV ACGT 2 cut(s) 102, 439
HpyCH4V TGCA 5 cut(s) 4, 44, 107, 230, 319
HpyF10VI GCNNNNNNNGC 2 cut(s) 91, 113
HpyF3I CTNAG 2 cut(s) 323, 341
HpySE526I ACGT 2 cut(s) 102, 439
Hsp92II CATG 4 cut(s) 169, 278, 319, 457
Kzo9I GATC 2 cut(s) 121, 575
LmnI GCTCC 2 cut(s) 49, 312
Lsp1109I GCAGC 3 cut(s) 64, 242, 331
LweI GCATC 3 cut(s) 31, 103, 384
MabI ACCWGGT 1 cut(s) 187
MaeI CTAG 2 cut(s) 146, 522
MaeII ACGT 2 cut(s) 102, 439
MaeIII GTNAC 1 cut(s) 12
MalI GATC 2 cut(s) 123, 577
MbiI CCGCTC 1 cut(s) 496
MboI GATC 2 cut(s) 121, 575
MboII GAAGA 1 cut(s) 251
MflI RGATCY 1 cut(s) 575
MluCI AATT 4 cut(s) 160, 176, 282, 348
MnlI CCTC 8 cut(s) 31, 51, 69, 127, 313, 318, 373, 502
MroXI GAANNNNTTC 1 cut(s) 258
MseI TTAA 1 cut(s) 527
MspA1I CMGCKG 1 cut(s) 322
MspI CCGG 1 cut(s) 17
MspR9I CCNGG 1 cut(s) 189
MvaI CCWGG 1 cut(s) 189
MvnI CGCG 1 cut(s) 183
MwoI GCNNNNNNNGC 2 cut(s) 91, 113
NdeII GATC 2 cut(s) 121, 575
NlaIII CATG 4 cut(s) 169, 278, 319, 457
NlaIV GGNNCC 1 cut(s) 577
NruI TCGCGA 1 cut(s) 183
NspI RCATGY 1 cut(s) 319
NspV TTCGAA 1 cut(s) 262
PaeI GCATGC 1 cut(s) 319
PagI TCATGA 1 cut(s) 165
PdmI GAANNNNTTC 1 cut(s) 258
PfeI GAWTC 5 cut(s) 22, 337, 434, 536, 581
PinAI ACCGGT 1 cut(s) 16
PkrI GCNGC 3 cut(s) 54, 232, 321
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 577
PspPI GGNCC 1 cut(s) 498
PstNI CAGNNNCTG 1 cut(s) 194
PsuI RGATCY 1 cut(s) 575
PvuII CAGCTG 1 cut(s) 322
RruI TCGCGA 1 cut(s) 183
SaqAI TTAA 1 cut(s) 527
SatI GCNGC 3 cut(s) 53, 231, 320
Sau3AI GATC 2 cut(s) 121, 575
Sau96I GGNCC 1 cut(s) 498
ScrFI CCNGG 1 cut(s) 189
SexAI ACCWGGT 1 cut(s) 187
SfaNI GCATC 3 cut(s) 31, 103, 384
SfuI TTCGAA 1 cut(s) 262
SinI GGWCC 1 cut(s) 498
SphI GCATGC 1 cut(s) 319
Sse9I AATT 4 cut(s) 160, 176, 282, 348
SsiI CCGC 1 cut(s) 496
SspMI CTAG 2 cut(s) 146, 522
StyD4I CCNGG 1 cut(s) 187
TaaI ACNGT 1 cut(s) 554
TaiI ACGT 2 cut(s) 105, 442
TaqI TCGA 1 cut(s) 262
TasI AATT 4 cut(s) 160, 176, 282, 348
TfiI GAWTC 5 cut(s) 22, 337, 434, 536, 581
Tru1I TTAA 1 cut(s) 527
Tru9I TTAA 1 cut(s) 527
TscAI CASTG 1 cut(s) 36
TseI GCWGC 3 cut(s) 52, 230, 319
TspDTI ATGAA 4 cut(s) 154, 182, 263, 470
TspRI CASTG 1 cut(s) 36
VpaK11BI GGWCC 1 cut(s) 498
XagI CCTNNNNNAGG 1 cut(s) 307
XapI RAATTY 2 cut(s) 160, 176
XceI RCATGY 1 cut(s) 319
XmnI GAANNNNTTC 1 cut(s) 258
XspI CTAG 2 cut(s) 146, 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.