RchiOBHm_Chr7g0232971

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000400
Physical Location & Seq
Reverse (-)
57175509 .. 57176825
1317 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20881

Sequence Viewer

Length: 1317 bp
ATGGAGTCTTTGATTGTGTCTCCGCTGGTAGAGGTGCTCTTTGGAAGGTTGGCTACCACTGTTGTTAGTGAAGTGCGAACTCGCAGAGGGGTCAAGAGAGAGATAGAGAGGATGCAGGAGATGTTACCGGTGATTCAAGCGGTGATAGAGGATGCAGAGGAGCAGCAGAGGAAAAATAAGAAGGTGAGGACTTGGCTGGCAAAGCTCAAAGACGTTGCAGTAGATGCTGATGATCTGCTTGATGAGGTTGCCACTCTAGTTCTACGCAAGAATTTCATGAAAAAGGAATTTCGCGGACCAGATGCTGCTACTAGATATGATTTCCTAATAATAAAGCTTATTGCAGCACAGGAAGAGTTTGACAGCGAAAGTATTCGAATACTGCTTCATGTGGGAATTGGAATTCTGTTTCCTTCCTCGGATAGGAGCATGGAGCTGAGGATTAGTATGATTCTGAGAGAAATGGAAGCTCTACAAAATACTTACACGGGAGAGGGCAAAATCAAGATTCTTCAGTTTATACTTTATAGCAAACTTTATGTACTTGATTCACGTCCGAATGTGAACATGAAGGACAGGATTGGTATGATACTGAGAAAGATTGGAGAGCGGACCAGATATGAGGTAAGGAAAACTAGCTTAACTCTTGAATCAATATCTACCTACCGTAAAAAGTCGCGTAAACTAAAGGAGATTTGTGGAAGATTGGATGATGTAGCCAAGGAAATGTCTACTTTCCAGTTCAAAGAAACTCAGTCGTATGGACGGTCAAGTACCATGGAGAGACCCCAAACTGGACCCTCTGTCAATGATTCAAAGGTTTATGGCAGAGAAGAGGATGTGGATAAAATTGTGGGGATGCTATTGTCTTCCAGTAGTGGTCCTGAAGTTGCAGTAATTCCCATTGTTGGTATTGGAGGGATGGGGAAAACAACACTTGCTCAGTTAGTTTATAATGATCCGAGGGTAACAAGCCAGTTTCAATCTTTAATGTGGGTGTCCGTCAATGACAATTTTAACCCGGCAAGGATCATAAATCAAATATTGAGTTATGTCGGACACGGCAGCCATGACTCATTTCAGATTGGGGTGCTGCAATCTCAATTGAGAGAATCCTTACTGGGAAAAAGATATTTGATAGTGCTCGATGATGTGTGGAATGAGGATCCAGATGAATGGGATAAAATAATGAATCCATTGAAAGGCTCCGCAGGTACAAGTAAAATTGTATTAACCACCCAGAGTGAGGCTGTTGCAGCCATATCTGGCACATTTCCCCCTTTTCATTTGGAGCCACTAACAAAAAAAGAGTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 map03460
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

438

Amino Acids

49.6

Weight (kDa)

8.57

Isoelectric Point (pI)

38.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 10 - 92 2.1e-23 Rx N-terminal domain
NB-ARC PF00931 278 - 438 7.6e-33 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000400)

Species Orthologous Gene IDs
malus_domestica MD05G1050700.v1.1 MD05G1050800.v1.1 MD08G1110700.v1.1 MD15G1090000.v1.1 MD15G1090100.v1.1 MD15G1090300.v1.1
prunus_persica Prupe.1G541300_v2.0.a1 Prupe.1G541300_v2.0.a1 Prupe.8G077100_v2.0.a1 Prupe.8G077200_v2.0.a1 Prupe.8G077500_v2.0.a1 Prupe.8G077600_v2.0.a1 Prupe.8G211300_v2.0.a1
pyrus_communis pycom05g04280 pycom08g09220 pycom15g08440
rosa_chinensis RchiOBHm_Chr1g0348461 RchiOBHm_Chr1g0348561 RchiOBHm_Chr6g0269201 RchiOBHm_Chr6g0269411 RchiOBHm_Chr6g0269421 RchiOBHm_Chr6g0269431 RchiOBHm_Chr7g0232901 RchiOBHm_Chr7g0232931 RchiOBHm_Chr7g0232961 RchiOBHm_Chr7g0232971
rosa_laevigata RLG00000001310
rosa_multiflora Rmu_sc0000091.1_g000001 Rmu_sc0000091.1_g000002 Rmu_sc0000091.1_g000008 Rmu_sc0000743.1_g000003 Rmu_sc0000743.1_g000004 Rmu_sc0005353.1_g000002 Rmu_sc0008668.1_g000002 Rmu_sc0015938.1_g000001 Rmu_ssc0000018.1_g000023 Rmu_ssc0000291.1_g000019 Rmu_ssc0000291.1_g000020 Rmu_ssc0000291.1_g000026 Rmu_ssc0000291.1_g000027
rosa_roxburghii Rroxscaffold_3G00227800 Rroxscaffold_3G00227820 Rroxscaffold_4G00306930 Rroxscaffold_4G00306950 Rroxscaffold_7G00198730
rosa_rugosa Rorug01G0194900 Rorug01G0194900 Rorug01G0195000 Rorug01G0195100 Rorug06G0045900 Rorug06G0046100 Rorug06G0047500 Rorug06G0047500 Rorug06G0047600 Rorug06G0047700 Rorug07G0276400 Rorug07G0276600 Rorug07G0276800.1 Rorug07G0276900
rosa_samantha Rh1AG213000 Rh1AG213100 Rh1BG179500 Rh1CG197300 Rh1CG197400 Rh1DG209600 Rh6AG166200 Rh6AG168000 Rh6AG168100 Rh6AG168200 Rh6BG171700 Rh6BG171800 Rh6BG173500 Rh6CG165300 Rh6CG167500 Rh6CG167600 Rh6DG156900 Rh6DG159400 Rh6DG159500 Rh6DG159600 Rh7AG431600 Rh7AG431700 Rh7AG431800 Rh7AG432100 Rh7AG432200 Rh7BG404700 Rh7BG404800 Rh7BG404900 Rh7BG405000 Rh7CG450600 Rh7CG450700 Rh7CG450800 Rh7CG451200 Rh7DG421300
rosa_wichuraiana Rw0G004710 Rw0G010410 Rw1G018020 Rw1G018040 Rw6G014350 Rw6G014450 Rw6G014470 Rw7G035660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 954
Acc36I ACCTGC 1 cut(s) 1202
AccBSI CCGCTC 1 cut(s) 610
AccI GTMKAC 1 cut(s) 731
AccII CGCG 2 cut(s) 294, 679
AciI CCGC 5 cut(s) 23, 140, 294, 610, 1209
AclWI GGATC 4 cut(s) 953, 1037, 1160, 1173
AcsI RAATTY 3 cut(s) 271, 287, 402
AcuI CTGAAG 2 cut(s) 497, 906
AfaI GTAC 3 cut(s) 543, 775, 1216
AfiI CCNNNNNNNGG 5 cut(s) 423, 794, 908, 1202, 1246
AgeI ACCGGT 1 cut(s) 127
AgsI TTSAA 6 cut(s) 137, 650, 745, 816, 983, 1201
AhdI GACNNNNNGTC 1 cut(s) 803
AjiI CACGTC 1 cut(s) 554
AluBI AGCT 5 cut(s) 205, 337, 436, 470, 639
AluI AGCT 5 cut(s) 205, 337, 436, 470, 639
Alw21I GWGCWC 2 cut(s) 39, 1146
Alw26I GTCTC 2 cut(s) 24, 778
AlwI GGATC 4 cut(s) 953, 1037, 1160, 1173
AlwNI CAGNNNCTG 1 cut(s) 305
ApeKI GCWGC 6 cut(s) 163, 305, 344, 1065, 1093, 1256
ApoI RAATTY 3 cut(s) 271, 287, 402
AsiGI ACCGGT 1 cut(s) 127
Asp700I GAANNNNTTC 1 cut(s) 372
AspS9I GGNCC 4 cut(s) 296, 612, 797, 881
AsuC2I CCSGG 1 cut(s) 1022
AsuHPI GGTGA 3 cut(s) 142, 154, 196
AsuII TTCGAA 1 cut(s) 376
AvaII GGWCC 4 cut(s) 296, 612, 797, 881
BamHI GGATCC 1 cut(s) 1165
BarI GAAGNNNNNNTAC 2 cut(s) 37, 69
BbsI GAAGAC 1 cut(s) 861
Bbv12I GWGCWC 2 cut(s) 39, 1146
BbvCI CCTCAGC 1 cut(s) 437
BbvI GCAGC 6 cut(s) 175, 292, 356, 1077, 1080, 1268
BccI CCATC 1 cut(s) 916
BceAI ACGGC 1 cut(s) 1078
BcnI CCSGG 1 cut(s) 1022
BcoDI GTCTC 2 cut(s) 24, 778
BfaI CTAG 4 cut(s) 257, 312, 636, 1315
BfuAI ACCTGC 1 cut(s) 1202
BisI GCNGC 6 cut(s) 164, 306, 345, 1066, 1094, 1257
BlsI GCNGC 6 cut(s) 165, 307, 346, 1067, 1095, 1258
Bme1390I CCNGG 1 cut(s) 1022
Bme18I GGWCC 4 cut(s) 296, 612, 797, 881
BmeRI GACNNNNNGTC 1 cut(s) 803
BmgBI CACGTC 1 cut(s) 554
BmgT120I GGNCC 4 cut(s) 296, 612, 797, 881
BmiI GGNNCC 4 cut(s) 799, 1167, 1207, 1293
BmrFI CCNGG 1 cut(s) 1022
BmrI ACTGGG 1 cut(s) 1130
BmsI GCATC 5 cut(s) 102, 142, 214, 292, 849
BmuI ACTGGG 1 cut(s) 1130
BpiI GAAGAC 1 cut(s) 861
Bpu10I CCTNAGC 1 cut(s) 437
Bpu14I TTCGAA 1 cut(s) 376
BpuMI CCSGG 1 cut(s) 1022
BsaI GGTCTC 1 cut(s) 778
BsaJI CCNNGG 4 cut(s) 417, 720, 777, 962
BsaWI WCCGGW 1 cut(s) 127
Bsc4I CCNNNNNNNGG 5 cut(s) 423, 794, 908, 1202, 1246
Bse118I RCCGGY 1 cut(s) 127
Bse1I ACTGG 5 cut(s) 739, 799, 873, 976, 1125
BseDI CCNNGG 4 cut(s) 417, 720, 777, 962
BseGI GGATG 6 cut(s) 117, 157, 715, 844, 864, 927
BseLI CCNNNNNNNGG 5 cut(s) 423, 794, 908, 1202, 1246
BseMII CTCAG 5 cut(s) 428, 446, 584, 767, 956
BseNI ACTGG 5 cut(s) 739, 799, 873, 976, 1125
BseRI GAGGAG 1 cut(s) 173
BseXI GCAGC 6 cut(s) 175, 292, 356, 1077, 1080, 1268
Bsh1236I CGCG 2 cut(s) 294, 679
BshTI ACCGGT 1 cut(s) 127
BsiHKAI GWGCWC 2 cut(s) 39, 1146
BsiSI CCGG 2 cut(s) 128, 1022
BslI CCNNNNNNNGG 5 cut(s) 423, 794, 908, 1202, 1246
BsmAI GTCTC 2 cut(s) 24, 778
Bso31I GGTCTC 1 cut(s) 778
Bsp119I TTCGAA 1 cut(s) 376
Bsp1286I GDGCHC 2 cut(s) 39, 1146
Bsp143I GATC 4 cut(s) 232, 958, 1029, 1165
Bsp19I CCATGG 1 cut(s) 777
BspACI CCGC 5 cut(s) 23, 140, 294, 610, 1209
BspCNI CTCAG 5 cut(s) 429, 447, 585, 766, 955
BspFNI CGCG 2 cut(s) 294, 679
BspHI TCATGA 1 cut(s) 276
BspLI GGNNCC 4 cut(s) 799, 1167, 1207, 1293
BspMI ACCTGC 1 cut(s) 1202
BspPI GGATC 4 cut(s) 953, 1037, 1160, 1173
BspT104I TTCGAA 1 cut(s) 376
BspTNI GGTCTC 1 cut(s) 778
BsrBI CCGCTC 1 cut(s) 610
BsrFI RCCGGY 1 cut(s) 127
BsrI ACTGG 5 cut(s) 739, 799, 873, 976, 1125
BssAI RCCGGY 1 cut(s) 127
BssECI CCNNGG 4 cut(s) 417, 720, 777, 962
BssMI GATC 4 cut(s) 232, 958, 1029, 1165
BssT1I CCWWGG 2 cut(s) 720, 777
Bst4CI ACNGT 3 cut(s) 61, 668, 768
Bst6I CTCTTC 2 cut(s) 348, 828
BstAPI GCANNNNNTGC 1 cut(s) 224
BstBI TTCGAA 1 cut(s) 376
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 5 cut(s) 437, 455, 593, 753, 942
BstDSI CCRYGG 1 cut(s) 777
BstENI CCTNNNNNAGG 1 cut(s) 421
BstF5I GGATG 6 cut(s) 117, 157, 715, 844, 864, 927
BstFNI CGCG 2 cut(s) 294, 679
BstKTI GATC 4 cut(s) 235, 961, 1032, 1168
BstMAI GTCTC 2 cut(s) 24, 778
BstMBI GATC 4 cut(s) 232, 958, 1029, 1165
BstMWI GCNNNNNNNGC 3 cut(s) 202, 224, 1256
BstSCI CCNGG 1 cut(s) 1020
BstUI CGCG 2 cut(s) 294, 679
BstV1I GCAGC 6 cut(s) 175, 292, 356, 1077, 1080, 1268
BstV2I GAAGAC 1 cut(s) 861
BstX2I RGATCY 1 cut(s) 1165
BstXI CCANNNNNNTGG 1 cut(s) 1176
BstYI RGATCY 1 cut(s) 1165
BtgI CCRYGG 1 cut(s) 777
BtrI CACGTC 1 cut(s) 554
BtsCI GGATG 6 cut(s) 117, 157, 715, 844, 864, 927
BtsIMutI CAGTG 1 cut(s) 57
BveI ACCTGC 1 cut(s) 1202
Cac8I GCNNGC 1 cut(s) 198
CaiI CAGNNNCTG 1 cut(s) 305
CciI TCATGA 1 cut(s) 276
Cfr10I RCCGGY 1 cut(s) 127
Cfr13I GGNCC 4 cut(s) 296, 612, 797, 881
Csp6I GTAC 3 cut(s) 542, 774, 1215
CspAI ACCGGT 1 cut(s) 127
CviAII CATG 6 cut(s) 277, 389, 430, 568, 778, 1070
CviQI GTAC 3 cut(s) 542, 774, 1215
DdeI CTNAG 5 cut(s) 437, 455, 593, 753, 942
DpnI GATC 4 cut(s) 234, 960, 1031, 1167
DpnII GATC 4 cut(s) 232, 958, 1029, 1165
DriI GACNNNNNGTC 1 cut(s) 803
Eam1104I CTCTTC 2 cut(s) 348, 828
Eam1105I GACNNNNNGTC 1 cut(s) 803
EarI CTCTTC 2 cut(s) 348, 828
Eco130I CCWWGG 2 cut(s) 720, 777
Eco31I GGTCTC 1 cut(s) 778
Eco47I GGWCC 4 cut(s) 296, 612, 797, 881
Eco57I CTGAAG 2 cut(s) 497, 906
EcoNI CCTNNNNNAGG 1 cut(s) 421
EcoRI GAATTC 1 cut(s) 402
EcoT14I CCWWGG 2 cut(s) 720, 777
ErhI CCWWGG 2 cut(s) 720, 777
FaeI CATG 6 cut(s) 280, 392, 433, 571, 781, 1073
FatI CATG 6 cut(s) 276, 388, 429, 567, 777, 1069
FblI GTMKAC 1 cut(s) 731
Fnu4HI GCNGC 6 cut(s) 164, 306, 345, 1066, 1094, 1257
FokI GGATG 6 cut(s) 124, 164, 722, 851, 871, 934
Fsp4HI GCNGC 6 cut(s) 164, 306, 345, 1066, 1094, 1257
FspBI CTAG 4 cut(s) 257, 312, 636, 1315
GluI GCNGC 6 cut(s) 164, 306, 345, 1066, 1094, 1257
HapII CCGG 2 cut(s) 128, 1022
Hin1II CATG 6 cut(s) 280, 392, 433, 571, 781, 1073
HindIII AAGCTT 1 cut(s) 335
HpaII CCGG 2 cut(s) 128, 1022
HphI GGTGA 3 cut(s) 142, 154, 196
Hpy166II GTNNAC 3 cut(s) 565, 683, 732
Hpy188I TCNGA 6 cut(s) 421, 456, 558, 963, 1058, 1083
Hpy188III TCNNGA 6 cut(s) 94, 277, 505, 647, 884, 1169
Hpy8I GTNNAC 3 cut(s) 565, 683, 732
HpyAV CCTTC 4 cut(s) 39, 175, 423, 565
HpyCH4III ACNGT 3 cut(s) 61, 668, 768
HpyCH4IV ACGT 2 cut(s) 213, 553
HpyCH4V TGCA 7 cut(s) 115, 155, 218, 344, 893, 1096, 1256
HpyF10VI GCNNNNNNNGC 3 cut(s) 202, 224, 1256
HpyF3I CTNAG 5 cut(s) 437, 455, 593, 753, 942
HpySE526I ACGT 2 cut(s) 213, 553
Hsp92II CATG 6 cut(s) 280, 392, 433, 571, 781, 1073
Kzo9I GATC 4 cut(s) 232, 958, 1029, 1165
LmnI GCTCC 5 cut(s) 160, 426, 433, 1211, 1291
Lsp1109I GCAGC 6 cut(s) 175, 292, 356, 1077, 1080, 1268
LweI GCATC 5 cut(s) 102, 142, 214, 292, 849
MaeI CTAG 4 cut(s) 257, 312, 636, 1315
MaeII ACGT 2 cut(s) 213, 553
MaeIII GTNAC 2 cut(s) 123, 967
MalI GATC 4 cut(s) 234, 960, 1031, 1167
MbiI CCGCTC 1 cut(s) 610
MboI GATC 4 cut(s) 232, 958, 1029, 1165
MboII GAAGA 5 cut(s) 365, 503, 714, 845, 861
MfeI CAATTG 1 cut(s) 1103
MflI RGATCY 1 cut(s) 1165
MhlI GDGCHC 2 cut(s) 39, 1146
MluCI AATT 9 cut(s) 271, 287, 396, 402, 849, 897, 1012, 1103, 1224
MlyI GAGTC 2 cut(s) 14, 1067
MmeI TCCRAC 1 cut(s) 1036
MroXI GAANNNNTTC 1 cut(s) 372
MseI TTAA 4 cut(s) 641, 989, 1017, 1232
MspA1I CMGCKG 1 cut(s) 25
MspI CCGG 2 cut(s) 128, 1022
MspR9I CCNGG 1 cut(s) 1022
MunI CAATTG 1 cut(s) 1103
MvnI CGCG 2 cut(s) 294, 679
MwoI GCNNNNNNNGC 3 cut(s) 202, 224, 1256
NciI CCSGG 1 cut(s) 1022
NcoI CCATGG 1 cut(s) 777
NdeII GATC 4 cut(s) 232, 958, 1029, 1165
NlaIII CATG 6 cut(s) 280, 392, 433, 571, 781, 1073
NlaIV GGNNCC 4 cut(s) 799, 1167, 1207, 1293
NspV TTCGAA 1 cut(s) 376
PagI TCATGA 1 cut(s) 276
PdmI GAANNNNTTC 1 cut(s) 372
PfeI GAWTC 8 cut(s) 133, 451, 508, 548, 650, 812, 1112, 1192
PinAI ACCGGT 1 cut(s) 127
PkrI GCNGC 6 cut(s) 165, 307, 346, 1067, 1095, 1258
PleI GAGTC 2 cut(s) 13, 1067
PpsI GAGTC 2 cut(s) 13, 1067
PsiI TTATAA 1 cut(s) 954
PspN4I GGNNCC 4 cut(s) 799, 1167, 1207, 1293
PspPI GGNCC 4 cut(s) 296, 612, 797, 881
PstNI CAGNNNCTG 1 cut(s) 305
PsuI RGATCY 1 cut(s) 1165
RsaI GTAC 3 cut(s) 543, 775, 1216
RsaNI GTAC 3 cut(s) 542, 774, 1215
SaqAI TTAA 4 cut(s) 641, 989, 1017, 1232
SatI GCNGC 6 cut(s) 164, 306, 345, 1066, 1094, 1257
Sau3AI GATC 4 cut(s) 232, 958, 1029, 1165
Sau96I GGNCC 4 cut(s) 296, 612, 797, 881
SchI GAGTC 2 cut(s) 14, 1067
ScrFI CCNGG 1 cut(s) 1022
SduI GDGCHC 2 cut(s) 39, 1146
SfaNI GCATC 5 cut(s) 102, 142, 214, 292, 849
SfuI TTCGAA 1 cut(s) 376
SinI GGWCC 4 cut(s) 296, 612, 797, 881
Sse9I AATT 9 cut(s) 271, 287, 396, 402, 849, 897, 1012, 1103, 1224
SsiI CCGC 5 cut(s) 23, 140, 294, 610, 1209
SspI AATATT 1 cut(s) 1044
SspMI CTAG 4 cut(s) 257, 312, 636, 1315
StyD4I CCNGG 1 cut(s) 1020
StyI CCWWGG 2 cut(s) 720, 777
TaaI ACNGT 3 cut(s) 61, 668, 768
TaiI ACGT 2 cut(s) 216, 556
TaqI TCGA 2 cut(s) 376, 1146
TasI AATT 9 cut(s) 271, 287, 396, 402, 849, 897, 1012, 1103, 1224
TatI WGTACW 1 cut(s) 541
TfiI GAWTC 8 cut(s) 133, 451, 508, 548, 650, 812, 1112, 1192
Tru1I TTAA 4 cut(s) 641, 989, 1017, 1232
Tru9I TTAA 4 cut(s) 641, 989, 1017, 1232
TscAI CASTG 1 cut(s) 64
TseI GCWGC 6 cut(s) 163, 305, 344, 1065, 1093, 1256
TspDTI ATGAA 7 cut(s) 265, 293, 377, 584, 1188, 1205, 1274
TspGWI ACGGA 1 cut(s) 991
TspRI CASTG 1 cut(s) 64
VpaK11BI GGWCC 4 cut(s) 296, 612, 797, 881
XagI CCTNNNNNAGG 1 cut(s) 421
XapI RAATTY 3 cut(s) 271, 287, 402
XmiI GTMKAC 1 cut(s) 731
XmnI GAANNNNTTC 1 cut(s) 372
XspI CTAG 4 cut(s) 257, 312, 636, 1315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.