Rmu_ssc0000291.1_g000026

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000291.1
OG0000400
Physical Location & Seq
Forward (+)
107814 .. 108944
1131 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000291.1_g000026.1.cds

Sequence Viewer

Length: 1131 bp
atggcagacctggtcgtatccccagctttgcaagtgatctttgacagaatagcatcccctgtcatagaaaagtttgctgacttgtgggatttcaaggacaacctccagaggctaagagagaccttgatgctgattcaacccactctcgaggatgcggaagagcaacaattctccaacaaagctgtcaaaatatggttgtcaaagctcgagaaggcagcttatgatgctgaggacggactgcactacttgactgctaaaggtatgatccctagcagtcgttatcaacttgatgatcttaagactgcttcccacattaaagagatgcttctggcattagaaacaactgtaaatgagggacttgttaagtttacttttacgaggcctaatatggtagatcgtcgatcttccgtgtgggagactagctcttttgtcatcaagtcacagatatatggaagagatgatgacaaagataaggtcgtgaaactgttgctgtcttctcaagctcaccaggaaggatatgcatcttgtatcgcaatagttggtattggaggaattggtaagaccactcttgctcaattagcatataatgacgagagagtaatccaaaacttcgatgttaggatgtggatttatgtctctgatgatttcaatgtcaagaagatcatgaagacaattatcgagtcagtaaccaatgatgagtgcaggttctcagacattgaacttcttcagtctcagctttggcgtctgctgcacaataaaagataccttctcgtgttggatgatgtttggacttcgcatcacaacgactgggacaaactaaaacctttgtttagagggggtgttgatggatgcaaagtcattgttaccacccgcaatacaaaaaccgcactcatgacagactctccaaattcccctttttatttgaagggcttagaggaggaggattgctgggctttgttcaagcaacaggcttttgggcgaggagaagaagagaaatatccacaccttttaccaattggtaagcagattgtcagaaaatgtggaggtgtgccattagcagcaaacgccagtgttggatgtaatgcgcttcaaaagaaatcaacaacagtggttgtctgtgcaaaatactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 map03460
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

376

Amino Acids

42.71

Weight (kDa)

6.42

Isoelectric Point (pI)

45.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000400)

Species Orthologous Gene IDs
malus_domestica MD05G1050700.v1.1 MD05G1050800.v1.1 MD08G1110700.v1.1 MD15G1090000.v1.1 MD15G1090100.v1.1 MD15G1090300.v1.1
prunus_persica Prupe.1G541300_v2.0.a1 Prupe.1G541300_v2.0.a1 Prupe.8G077100_v2.0.a1 Prupe.8G077200_v2.0.a1 Prupe.8G077500_v2.0.a1 Prupe.8G077600_v2.0.a1 Prupe.8G211300_v2.0.a1
pyrus_communis pycom05g04280 pycom08g09220 pycom15g08440
rosa_chinensis RchiOBHm_Chr1g0348461 RchiOBHm_Chr1g0348561 RchiOBHm_Chr6g0269201 RchiOBHm_Chr6g0269411 RchiOBHm_Chr6g0269421 RchiOBHm_Chr6g0269431 RchiOBHm_Chr7g0232901 RchiOBHm_Chr7g0232931 RchiOBHm_Chr7g0232961 RchiOBHm_Chr7g0232971
rosa_laevigata RLG00000001310
rosa_multiflora Rmu_sc0000091.1_g000001 Rmu_sc0000091.1_g000002 Rmu_sc0000091.1_g000008 Rmu_sc0000743.1_g000003 Rmu_sc0000743.1_g000004 Rmu_sc0005353.1_g000002 Rmu_sc0008668.1_g000002 Rmu_sc0015938.1_g000001 Rmu_ssc0000018.1_g000023 Rmu_ssc0000291.1_g000019 Rmu_ssc0000291.1_g000020 Rmu_ssc0000291.1_g000026 Rmu_ssc0000291.1_g000027
rosa_roxburghii Rroxscaffold_3G00227800 Rroxscaffold_3G00227820 Rroxscaffold_4G00306930 Rroxscaffold_4G00306950 Rroxscaffold_7G00198730
rosa_rugosa Rorug01G0194900 Rorug01G0194900 Rorug01G0195000 Rorug01G0195100 Rorug06G0045900 Rorug06G0046100 Rorug06G0047500 Rorug06G0047500 Rorug06G0047600 Rorug06G0047700 Rorug07G0276400 Rorug07G0276600 Rorug07G0276800.1 Rorug07G0276900
rosa_samantha Rh1AG213000 Rh1AG213100 Rh1BG179500 Rh1CG197300 Rh1CG197400 Rh1DG209600 Rh6AG166200 Rh6AG168000 Rh6AG168100 Rh6AG168200 Rh6BG171700 Rh6BG171800 Rh6BG173500 Rh6CG165300 Rh6CG167500 Rh6CG167600 Rh6DG156900 Rh6DG159400 Rh6DG159500 Rh6DG159600 Rh7AG431600 Rh7AG431700 Rh7AG431800 Rh7AG432100 Rh7AG432200 Rh7BG404700 Rh7BG404800 Rh7BG404900 Rh7BG405000 Rh7CG450600 Rh7CG450700 Rh7CG450800 Rh7CG451200 Rh7DG421300
rosa_wichuraiana Rw0G004710 Rw0G010410 Rw1G018020 Rw1G018040 Rw6G014350 Rw6G014450 Rw6G014470 Rw7G035660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 693
AciI CCGC 3 cut(s) 155, 871, 885
AclWI GGATC 1 cut(s) 259
AcsI RAATTY 1 cut(s) 907
AcuI CTGAAG 1 cut(s) 710
AcyI GRCGYC 1 cut(s) 742
AflII CTTAAG 1 cut(s) 296
AgsI TTSAA 7 cut(s) 94, 137, 649, 719, 925, 961, 1091
AjnI CCWGG 2 cut(s) 9, 507
AluBI AGCT 7 cut(s) 26, 182, 205, 218, 423, 503, 736
AluI AGCT 7 cut(s) 26, 182, 205, 218, 423, 503, 736
Alw26I GTCTC 4 cut(s) 113, 410, 640, 735
AlwI GGATC 1 cut(s) 259
Ama87I CYCGRG 2 cut(s) 146, 206
AoxI GGCC 1 cut(s) 380
ApeKI GCWGC 3 cut(s) 215, 748, 1058
ApoI RAATTY 1 cut(s) 907
ArsI GACNNNNNNTTYG 2 cut(s) 459, 491
Asp700I GAANNNNTTC 1 cut(s) 723
AspLEI GCGC 1 cut(s) 1087
AsuHPI GGTGA 1 cut(s) 497
AvaI CYCGRG 2 cut(s) 146, 206
BauI CACGAG 1 cut(s) 770
BbsI GAAGAC 2 cut(s) 486, 674
BbvCI CCTCAGC 1 cut(s) 228
BbvI GCAGC 3 cut(s) 227, 735, 1070
BccI CCATC 1 cut(s) 839
BciT130I CCWGG 2 cut(s) 11, 509
BciVI GTATCC 1 cut(s) 28
BcoDI GTCTC 4 cut(s) 113, 410, 640, 735
BfaI CTAG 2 cut(s) 270, 420
BfrI CTTAAG 1 cut(s) 296
BfuAI ACCTGC 1 cut(s) 693
BfuI GTATCC 1 cut(s) 28
BisI GCNGC 3 cut(s) 216, 749, 1059
BlsI GCNGC 3 cut(s) 217, 750, 1060
Bme1390I CCNGG 2 cut(s) 11, 509
BmeT110I CYCGRG 2 cut(s) 146, 206
BmrFI CCNGG 2 cut(s) 11, 509
BmrI ACTGGG 1 cut(s) 817
BmsI GCATC 8 cut(s) 62, 117, 142, 214, 312, 530, 805, 839
BmuI ACTGGG 1 cut(s) 817
BpiI GAAGAC 2 cut(s) 486, 674
BplI GAGNNNNNCTC 2 cut(s) 407, 439
BpmI CTGGAG 1 cut(s) 89
Bpu10I CCTNAGC 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 483
BsaBI GATNNNNATC 1 cut(s) 520
BsaHI GRCGYC 1 cut(s) 742
BsaI GGTCTC 1 cut(s) 113
BsaXI ACNNNNNCTCC 2 cut(s) 886, 916
Bse1I ACTGG 2 cut(s) 812, 1068
Bse8I GATNNNNATC 1 cut(s) 520
BseBI CCWGG 2 cut(s) 11, 509
BseGI GGATG 6 cut(s) 53, 157, 627, 784, 854, 1082
BseJI GATNNNNATC 1 cut(s) 520
BseMII CTCAG 3 cut(s) 219, 723, 746
BseNI ACTGG 2 cut(s) 812, 1068
BseRI GAGGAG 3 cut(s) 950, 953, 996
BseXI GCAGC 3 cut(s) 227, 735, 1070
BseYI CCCAGC 2 cut(s) 22, 948
BsgI GTGCAG 3 cut(s) 224, 721, 734
BshFI GGCC 1 cut(s) 382
BsiHKCI CYCGRG 2 cut(s) 146, 206
BslFI GGGAC 2 cut(s) 369, 824
BsmAI GTCTC 4 cut(s) 113, 410, 640, 735
BsmFI GGGAC 2 cut(s) 369, 824
BsnI GGCC 1 cut(s) 382
Bso31I GGTCTC 1 cut(s) 113
BsoBI CYCGRG 2 cut(s) 146, 206
Bsp143I GATC 6 cut(s) 36, 264, 292, 394, 401, 660
BspACI CCGC 3 cut(s) 155, 871, 885
BspANI GGCC 1 cut(s) 382
BspCNI CTCAG 3 cut(s) 220, 722, 745
BspHI TCATGA 2 cut(s) 663, 891
BspMI ACCTGC 1 cut(s) 693
BspPI GGATC 1 cut(s) 259
BspQI GCTCTTC 1 cut(s) 153
BspTI CTTAAG 1 cut(s) 296
BspTNI GGTCTC 1 cut(s) 113
BsrI ACTGG 2 cut(s) 812, 1068
BssMI GATC 6 cut(s) 36, 264, 292, 394, 401, 660
BssNI GRCGYC 1 cut(s) 742
BssSI CACGAG 1 cut(s) 770
Bst2BI CACGAG 1 cut(s) 770
Bst2UI CCWGG 2 cut(s) 11, 509
Bst4CI ACNGT 3 cut(s) 346, 486, 1108
Bst6I CTCTTC 3 cut(s) 153, 448, 984
BstACI GRCGYC 1 cut(s) 742
BstAFI CTTAAG 1 cut(s) 296
BstDEI CTNAG 5 cut(s) 113, 228, 709, 732, 931
BstF5I GGATG 6 cut(s) 53, 157, 627, 784, 854, 1082
BstHHI GCGC 1 cut(s) 1087
BstKTI GATC 6 cut(s) 39, 267, 295, 397, 404, 663
BstMAI GTCTC 4 cut(s) 113, 410, 640, 735
BstMBI GATC 6 cut(s) 36, 264, 292, 394, 401, 660
BstMWI GCNNNNNNNGC 4 cut(s) 224, 578, 748, 1064
BstNI CCWGG 2 cut(s) 11, 509
BstSCI CCNGG 2 cut(s) 9, 507
BstV1I GCAGC 3 cut(s) 227, 735, 1070
BstV2I GAAGAC 2 cut(s) 486, 674
BsuI GTATCC 1 cut(s) 28
BsuRI GGCC 1 cut(s) 382
BtsCI GGATG 6 cut(s) 53, 157, 627, 784, 854, 1082
BtsIMutI CAGTG 2 cut(s) 1075, 1113
BveI ACCTGC 1 cut(s) 693
CciI TCATGA 2 cut(s) 663, 891
CfoI GCGC 1 cut(s) 1087
CseI GACGC 1 cut(s) 731
CsiI ACCWGGT 1 cut(s) 9
CspCI CAANNNNNGTGG 2 cut(s) 1089, 1124
CviAII CATG 2 cut(s) 664, 892
DdeI CTNAG 5 cut(s) 113, 228, 709, 732, 931
DpnI GATC 6 cut(s) 38, 266, 294, 396, 403, 662
DpnII GATC 6 cut(s) 36, 264, 292, 394, 401, 660
Eam1104I CTCTTC 3 cut(s) 153, 448, 984
EarI CTCTTC 3 cut(s) 153, 448, 984
Eco147I AGGCCT 1 cut(s) 382
Eco31I GGTCTC 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 710
Eco88I CYCGRG 2 cut(s) 146, 206
EcoRII CCWGG 2 cut(s) 9, 507
EcoT22I ATGCAT 1 cut(s) 523
FaeI CATG 2 cut(s) 667, 895
FalI AAGNNNNNCTT 2 cut(s) 309, 341
FaqI GGGAC 2 cut(s) 369, 824
FatI CATG 2 cut(s) 663, 891
FauI CCCGC 1 cut(s) 878
Fnu4HI GCNGC 3 cut(s) 216, 749, 1059
FokI GGATG 6 cut(s) 40, 164, 634, 791, 861, 1089
Fsp4HI GCNGC 3 cut(s) 216, 749, 1059
FspBI CTAG 2 cut(s) 270, 420
GlaI GCGC 1 cut(s) 1086
GluI GCNGC 3 cut(s) 216, 749, 1059
GsaI CCCAGC 2 cut(s) 26, 952
GsuI CTGGAG 1 cut(s) 89
HaeIII GGCC 1 cut(s) 382
HgaI GACGC 1 cut(s) 731
HhaI GCGC 1 cut(s) 1087
Hin1I GRCGYC 1 cut(s) 742
Hin1II CATG 2 cut(s) 667, 895
Hin6I GCGC 1 cut(s) 1085
HinP1I GCGC 1 cut(s) 1085
HinfI GANTC 3 cut(s) 133, 680, 899
HphI GGTGA 1 cut(s) 497
Hpy166II GTNNAC 1 cut(s) 369
Hpy188I TCNGA 3 cut(s) 640, 712, 1034
Hpy188III TCNNGA 7 cut(s) 106, 146, 208, 478, 655, 664, 892
Hpy8I GTNNAC 1 cut(s) 369
Hpy99I CGWCG 1 cut(s) 402
HpyAV CCTTC 4 cut(s) 205, 506, 776, 919
HpyCH4III ACNGT 3 cut(s) 346, 486, 1108
HpyCH4V TGCA 7 cut(s) 31, 241, 521, 702, 751, 852, 1121
HpyF10VI GCNNNNNNNGC 4 cut(s) 224, 578, 748, 1064
HpyF3I CTNAG 5 cut(s) 113, 228, 709, 732, 931
Hsp92I GRCGYC 1 cut(s) 742
Hsp92II CATG 2 cut(s) 667, 895
HspAI GCGC 1 cut(s) 1085
Kzo9I GATC 6 cut(s) 36, 264, 292, 394, 401, 660
LguI GCTCTTC 1 cut(s) 153
Lsp1109I GCAGC 3 cut(s) 227, 735, 1070
LweI GCATC 8 cut(s) 62, 117, 142, 214, 312, 530, 805, 839
MabI ACCWGGT 1 cut(s) 9
MaeI CTAG 2 cut(s) 270, 420
MaeIII GTNAC 3 cut(s) 438, 685, 862
MalI GATC 6 cut(s) 38, 266, 294, 396, 403, 662
MboI GATC 6 cut(s) 36, 264, 292, 394, 401, 660
MboII GAAGA 9 cut(s) 170, 396, 465, 486, 670, 679, 716, 998, 1001
MfeI CAATTG 1 cut(s) 1014
MluCI AATT 6 cut(s) 167, 552, 575, 672, 907, 1014
MlyI GAGTC 2 cut(s) 689, 893
MmeI TCCRAC 3 cut(s) 198, 756, 1054
Mph1103I ATGCAT 1 cut(s) 523
MroXI GAANNNNTTC 1 cut(s) 723
MseI TTAA 3 cut(s) 297, 315, 363
MspCI CTTAAG 1 cut(s) 296
MspR9I CCNGG 2 cut(s) 11, 509
MunI CAATTG 1 cut(s) 1014
MvaI CCWGG 2 cut(s) 11, 509
MwoI GCNNNNNNNGC 4 cut(s) 224, 578, 748, 1064
NdeII GATC 6 cut(s) 36, 264, 292, 394, 401, 660
NlaIII CATG 2 cut(s) 667, 895
NmuCI GTSAC 1 cut(s) 438
NsiI ATGCAT 1 cut(s) 523
PaeR7I CTCGAG 2 cut(s) 146, 206
PagI TCATGA 2 cut(s) 663, 891
PceI AGGCCT 1 cut(s) 382
PciSI GCTCTTC 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 723
PfeI GAWTC 1 cut(s) 133
PflFI GACNNNGTC 1 cut(s) 11
PkrI GCNGC 3 cut(s) 217, 750, 1060
PleI GAGTC 2 cut(s) 688, 893
PpsI GAGTC 2 cut(s) 688, 893
Psp6I CCWGG 2 cut(s) 9, 507
PspFI CCCAGC 2 cut(s) 22, 948
PspGI CCWGG 2 cut(s) 9, 507
PsyI GACNNNGTC 1 cut(s) 11
SapI GCTCTTC 1 cut(s) 153
SaqAI TTAA 3 cut(s) 297, 315, 363
SatI GCNGC 3 cut(s) 216, 749, 1059
Sau3AI GATC 6 cut(s) 36, 264, 292, 394, 401, 660
SchI GAGTC 2 cut(s) 689, 893
ScrFI CCNGG 2 cut(s) 11, 509
SexAI ACCWGGT 1 cut(s) 9
SfaNI GCATC 8 cut(s) 62, 117, 142, 214, 312, 530, 805, 839
Sfr274I CTCGAG 2 cut(s) 146, 206
SlaI CTCGAG 2 cut(s) 146, 206
SmlI CTYRAG 4 cut(s) 146, 206, 296, 498
SmoI CTYRAG 4 cut(s) 146, 206, 296, 498
Sse9I AATT 6 cut(s) 167, 552, 575, 672, 907, 1014
SseBI AGGCCT 1 cut(s) 382
SsiI CCGC 3 cut(s) 155, 871, 885
SspMI CTAG 2 cut(s) 270, 420
StuI AGGCCT 1 cut(s) 382
StyD4I CCNGG 2 cut(s) 9, 507
TaaI ACNGT 3 cut(s) 346, 486, 1108
TaqI TCGA 5 cut(s) 147, 207, 400, 612, 678
TasI AATT 6 cut(s) 167, 552, 575, 672, 907, 1014
TfiI GAWTC 1 cut(s) 133
Tru1I TTAA 3 cut(s) 297, 315, 363
Tru9I TTAA 3 cut(s) 297, 315, 363
TscAI CASTG 2 cut(s) 1075, 1113
TseFI GTSAC 1 cut(s) 438
TseI GCWGC 3 cut(s) 215, 748, 1058
Tsp45I GTSAC 1 cut(s) 438
TspDTI ATGAA 1 cut(s) 680
TspGWI ACGGA 2 cut(s) 249, 397
TspRI CASTG 2 cut(s) 1075, 1113
Tth111I GACNNNGTC 1 cut(s) 11
Vha464I CTTAAG 1 cut(s) 296
XapI RAATTY 1 cut(s) 907
XhoI CTCGAG 2 cut(s) 146, 206
XmnI GAANNNNTTC 1 cut(s) 723
XspI CTAG 2 cut(s) 270, 420
Zsp2I ATGCAT 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.