Rorug06G0045900

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000400
Physical Location & Seq
Forward (+)
6039044 .. 6043194
4151 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0045900.1

Sequence Viewer

Length: 885 bp
ATGGGTGGCCTTGTGGTGAGTATTGCGATGACTCCCTTTGTACAACTTTGGGGGAGACCATGGAATTTGGTAGACATATCCTCAGCGGCTACTTTACTGGCCCTCCACGGCCTCTGTTTGTTTGCTCCGTTTCATTTCACCTGGGCTGCCTTTTGGGTGGCTGCTGCACTCTACATTCTCACAGGTTTGGGAGTCACTCTGGGTTTCCATAGACACCTTGCGCACAAGAGTTTCCAGCTTCCCAAATGGCTCGAATACTTGTTTGTCTATTTTGGGGTTCTATCACTTCAGGGAAGTCCGATAGAATGGGTGAGCACACACCGGTACCATCACCAGTTTACTGACACAGAGAGAGACCCTCACAGCCCCTTGGAGGGTTTCTGGTTTAGTCATATGGGTTGGATCCTTGATAGCACTTCTCGGTATCGAAAATATGGAGGACTGAAGAACGTTGAGGATATGAAAAAGCAGTGGTTCTATAGACTTCTTCATCGTACATACCCCGTACACGTATTTGTTTCTGGAGCATTGCTCTATGCCCTAGGTGGACTACCTTCTTTATTTGGGGAACGGTATGGAGTGAGGATAGTATATGTTTCCCACTTCACTTTGCTAGTGAACTCGGCCGGTCACATATGGGGAAAACAAGTATGGAACACCGGCGACTTGTCAAAGAACAATTGGTGGTTGGGATGGATCCCACTTGGAGAAGGGTGGCACAACAACCATCATGCATTTGAATACTCAGCTCGACAAGGCCTAGAATGGTGGCAAGTCGACTTCACTTGGTATGTAATCCGAGCTTTTCAAGCAATTGGGTTGGCAACTGACGTCAAAACTCCGACTGAATCTCAGATGCGTCGCAAAGCCCTTAAGAAGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 map03460
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

294

Amino Acids

34.12

Weight (kDa)

9.5

Isoelectric Point (pI)

29.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FA_desaturase PF00487 47 - 269 2.6e-18 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000400)

Species Orthologous Gene IDs
malus_domestica MD05G1050700.v1.1 MD05G1050800.v1.1 MD08G1110700.v1.1 MD15G1090000.v1.1 MD15G1090100.v1.1 MD15G1090300.v1.1
prunus_persica Prupe.1G541300_v2.0.a1 Prupe.1G541300_v2.0.a1 Prupe.8G077100_v2.0.a1 Prupe.8G077200_v2.0.a1 Prupe.8G077500_v2.0.a1 Prupe.8G077600_v2.0.a1 Prupe.8G211300_v2.0.a1
pyrus_communis pycom05g04280 pycom08g09220 pycom15g08440
rosa_chinensis RchiOBHm_Chr1g0348461 RchiOBHm_Chr1g0348561 RchiOBHm_Chr6g0269201 RchiOBHm_Chr6g0269411 RchiOBHm_Chr6g0269421 RchiOBHm_Chr6g0269431 RchiOBHm_Chr7g0232901 RchiOBHm_Chr7g0232931 RchiOBHm_Chr7g0232961 RchiOBHm_Chr7g0232971
rosa_laevigata RLG00000001310
rosa_multiflora Rmu_sc0000091.1_g000001 Rmu_sc0000091.1_g000002 Rmu_sc0000091.1_g000008 Rmu_sc0000743.1_g000003 Rmu_sc0000743.1_g000004 Rmu_sc0005353.1_g000002 Rmu_sc0008668.1_g000002 Rmu_sc0015938.1_g000001 Rmu_ssc0000018.1_g000023 Rmu_ssc0000291.1_g000019 Rmu_ssc0000291.1_g000020 Rmu_ssc0000291.1_g000026 Rmu_ssc0000291.1_g000027
rosa_roxburghii Rroxscaffold_3G00227800 Rroxscaffold_3G00227820 Rroxscaffold_4G00306930 Rroxscaffold_4G00306950 Rroxscaffold_7G00198730
rosa_rugosa Rorug01G0194900 Rorug01G0194900 Rorug01G0195000 Rorug01G0195100 Rorug06G0045900 Rorug06G0046100 Rorug06G0047500 Rorug06G0047500 Rorug06G0047600 Rorug06G0047700 Rorug07G0276400 Rorug07G0276600 Rorug07G0276800.1 Rorug07G0276900
rosa_samantha Rh1AG213000 Rh1AG213100 Rh1BG179500 Rh1CG197300 Rh1CG197400 Rh1DG209600 Rh6AG166200 Rh6AG168000 Rh6AG168100 Rh6AG168200 Rh6BG171700 Rh6BG171800 Rh6BG173500 Rh6CG165300 Rh6CG167500 Rh6CG167600 Rh6DG156900 Rh6DG159400 Rh6DG159500 Rh6DG159600 Rh7AG431600 Rh7AG431700 Rh7AG431800 Rh7AG432100 Rh7AG432200 Rh7BG404700 Rh7BG404800 Rh7BG404900 Rh7BG405000 Rh7CG450600 Rh7CG450700 Rh7CG450800 Rh7CG451200 Rh7DG421300
rosa_wichuraiana Rw0G004710 Rw0G010410 Rw1G018020 Rw1G018040 Rw6G014350 Rw6G014450 Rw6G014470 Rw7G035660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 834
Acc16I TGCGCA 1 cut(s) 222
Acc65I GGTACC 1 cut(s) 324
AccB1I GGYRCC 1 cut(s) 324
AccI GTMKAC 2 cut(s) 72, 777
AciI CCGC 1 cut(s) 86
AclI AACGTT 1 cut(s) 450
AclWI GGATC 4 cut(s) 397, 410, 691, 704
AcoI YGGCCR 1 cut(s) 624
AcsI RAATTY 1 cut(s) 64
AcuI CTGAAG 2 cut(s) 272, 464
AcyI GRCGYC 1 cut(s) 831
AfaI GTAC 5 cut(s) 42, 326, 496, 507, 881
AfiI CCNNNNNNNGG 2 cut(s) 373, 374
AflII CTTAAG 1 cut(s) 872
AflIII ACRYGT 1 cut(s) 508
AgeI ACCGGT 1 cut(s) 321
AgsI TTSAA 2 cut(s) 740, 809
AjnI CCWGG 1 cut(s) 140
AluBI AGCT 3 cut(s) 238, 749, 803
AluI AGCT 3 cut(s) 238, 749, 803
Alw21I GWGCWC 1 cut(s) 317
Alw26I GTCTC 2 cut(s) 49, 348
AlwI GGATC 4 cut(s) 397, 410, 691, 704
AoxI GGCC 5 cut(s) 7, 99, 109, 624, 757
ApeKI GCWGC 3 cut(s) 146, 161, 164
ApoI RAATTY 1 cut(s) 64
AsiGI ACCGGT 1 cut(s) 321
Asp718I GGTACC 1 cut(s) 324
AspA2I CCTAGG 1 cut(s) 541
AspLEI GCGC 1 cut(s) 223
AspS9I GGNCC 1 cut(s) 100
AsuHPI GGTGA 4 cut(s) 28, 130, 322, 323
AvrII CCTAGG 1 cut(s) 541
BaeI ACNNNNGTAYC 2 cut(s) 308, 341
BamHI GGATCC 2 cut(s) 402, 696
BanI GGYRCC 1 cut(s) 324
Bbv12I GWGCWC 1 cut(s) 317
BbvCI CCTCAGC 1 cut(s) 82
BbvI GCAGC 3 cut(s) 133, 148, 151
BccI CCATC 3 cut(s) 336, 687, 735
BceAI ACGGC 1 cut(s) 124
BciT130I CCWGG 1 cut(s) 142
BcoDI GTCTC 2 cut(s) 49, 348
BfaI CTAG 3 cut(s) 542, 614, 761
BfmI CTRYAG 1 cut(s) 478
BfrI CTTAAG 1 cut(s) 872
BisI GCNGC 4 cut(s) 87, 147, 162, 165
BlnI CCTAGG 1 cut(s) 541
BlsI GCNGC 4 cut(s) 88, 148, 163, 166
BmcAI AGTACT 1 cut(s) 881
Bme1390I CCNGG 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 100
BmiI GGNNCC 3 cut(s) 326, 404, 698
BmrFI CCNGG 1 cut(s) 142
BmsI GCATC 1 cut(s) 846
BplI GAGNNNNNCTC 4 cut(s) 343, 375, 516, 548
BpmI CTGGAG 1 cut(s) 543
Bpu10I CCTNAGC 1 cut(s) 82
BsaAI YACGTR 1 cut(s) 511
BsaHI GRCGYC 1 cut(s) 831
BsaI GGTCTC 2 cut(s) 49, 348
BsaJI CCNNGG 5 cut(s) 59, 106, 141, 369, 541
BsaWI WCCGGW 1 cut(s) 321
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
Bsc4I CCNNNNNNNGG 2 cut(s) 373, 374
Bse118I RCCGGY 3 cut(s) 321, 626, 659
Bse1I ACTGG 2 cut(s) 102, 334
Bse3DI GCAATG 1 cut(s) 527
BseBI CCWGG 1 cut(s) 142
BseDI CCNNGG 5 cut(s) 59, 106, 141, 369, 541
BseGI GGATG 1 cut(s) 698
BseLI CCNNNNNNNGG 2 cut(s) 373, 374
BseMI GCAATG 1 cut(s) 527
BseMII CTCAG 3 cut(s) 96, 759, 866
BseNI ACTGG 2 cut(s) 102, 334
BseX3I CGGCCG 1 cut(s) 624
BseXI GCAGC 3 cut(s) 133, 148, 151
BsgI GTGCAG 1 cut(s) 150
Bsh1285I CGRYCG 1 cut(s) 627
BshFI GGCC 5 cut(s) 9, 101, 111, 626, 759
BshNI GGYRCC 1 cut(s) 324
BshTI ACCGGT 1 cut(s) 321
BsiEI CGRYCG 1 cut(s) 627
BsiHKAI GWGCWC 1 cut(s) 317
BsiSI CCGG 3 cut(s) 322, 627, 660
BslI CCNNNNNNNGG 2 cut(s) 373, 374
BsmAI GTCTC 2 cut(s) 49, 348
BsnI GGCC 5 cut(s) 9, 101, 111, 626, 759
Bso31I GGTCTC 2 cut(s) 49, 348
Bsp1286I GDGCHC 1 cut(s) 317
Bsp1407I TGTACA 1 cut(s) 40
Bsp143I GATC 2 cut(s) 402, 696
Bsp19I CCATGG 1 cut(s) 59
BspACI CCGC 1 cut(s) 86
BspANI GGCC 5 cut(s) 9, 101, 111, 626, 759
BspCNI CTCAG 3 cut(s) 95, 758, 865
BspLI GGNNCC 3 cut(s) 326, 404, 698
BspPI GGATC 4 cut(s) 397, 410, 691, 704
BspT107I GGYRCC 1 cut(s) 324
BspTI CTTAAG 1 cut(s) 872
BspTNI GGTCTC 2 cut(s) 49, 348
BsrDI GCAATG 1 cut(s) 527
BsrFI RCCGGY 3 cut(s) 321, 626, 659
BsrGI TGTACA 1 cut(s) 40
BsrI ACTGG 2 cut(s) 102, 334
BssAI RCCGGY 3 cut(s) 321, 626, 659
BssECI CCNNGG 5 cut(s) 59, 106, 141, 369, 541
BssMI GATC 2 cut(s) 402, 696
BssNI GRCGYC 1 cut(s) 831
BssT1I CCWWGG 3 cut(s) 59, 369, 541
Bst2UI CCWGG 1 cut(s) 142
Bst4CI ACNGT 1 cut(s) 573
BstACI GRCGYC 1 cut(s) 831
BstAFI CTTAAG 1 cut(s) 872
BstAUI TGTACA 1 cut(s) 40
BstBAI YACGTR 1 cut(s) 511
BstDEI CTNAG 3 cut(s) 82, 745, 852
BstDSI CCRYGG 2 cut(s) 59, 106
BstF5I GGATG 1 cut(s) 698
BstHHI GCGC 1 cut(s) 223
BstKTI GATC 2 cut(s) 405, 699
BstMAI GTCTC 2 cut(s) 49, 348
BstMBI GATC 2 cut(s) 402, 696
BstMCI CGRYCG 1 cut(s) 627
BstMWI GCNNNNNNNGC 1 cut(s) 809
BstNI CCWGG 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 140
BstSFI CTRYAG 1 cut(s) 478
BstV1I GCAGC 3 cut(s) 133, 148, 151
BstX2I RGATCY 2 cut(s) 402, 696
BstYI RGATCY 2 cut(s) 402, 696
BstZI CGGCCG 1 cut(s) 624
BsuRI GGCC 5 cut(s) 9, 101, 111, 626, 759
BtgI CCRYGG 2 cut(s) 59, 106
BtgZI GCGATG 1 cut(s) 41
BtsCI GGATG 1 cut(s) 698
BtsI GCAGTG 1 cut(s) 476
BtsIMutI CAGTG 1 cut(s) 476
CfoI GCGC 1 cut(s) 223
Cfr10I RCCGGY 3 cut(s) 321, 626, 659
Cfr13I GGNCC 1 cut(s) 100
CseI GACGC 1 cut(s) 848
Csp6I GTAC 5 cut(s) 41, 325, 495, 506, 880
CspAI ACCGGT 1 cut(s) 321
CviAII CATG 2 cut(s) 60, 731
CviQI GTAC 5 cut(s) 41, 325, 495, 506, 880
DdeI CTNAG 3 cut(s) 82, 745, 852
DpnI GATC 2 cut(s) 404, 698
DpnII GATC 2 cut(s) 402, 696
EaeI YGGCCR 1 cut(s) 624
EagI CGGCCG 1 cut(s) 624
EclXI CGGCCG 1 cut(s) 624
Eco130I CCWWGG 3 cut(s) 59, 369, 541
Eco147I AGGCCT 1 cut(s) 759
Eco31I GGTCTC 2 cut(s) 49, 348
Eco52I CGGCCG 1 cut(s) 624
Eco57I CTGAAG 2 cut(s) 272, 464
EcoRII CCWGG 1 cut(s) 140
EcoT14I CCWWGG 3 cut(s) 59, 369, 541
EcoT22I ATGCAT 1 cut(s) 736
ErhI CCWWGG 3 cut(s) 59, 369, 541
FaeI CATG 2 cut(s) 63, 734
FatI CATG 2 cut(s) 59, 730
FauNDI CATATG 2 cut(s) 393, 635
FblI GTMKAC 2 cut(s) 72, 777
Fnu4HI GCNGC 4 cut(s) 87, 147, 162, 165
FokI GGATG 1 cut(s) 705
Fsp4HI GCNGC 4 cut(s) 87, 147, 162, 165
FspBI CTAG 3 cut(s) 542, 614, 761
FspI TGCGCA 1 cut(s) 222
GlaI GCGC 1 cut(s) 222
GluI GCNGC 4 cut(s) 87, 147, 162, 165
GsuI CTGGAG 1 cut(s) 543
HaeIII GGCC 5 cut(s) 9, 101, 111, 626, 759
HapII CCGG 3 cut(s) 322, 627, 660
HgaI GACGC 1 cut(s) 848
HhaI GCGC 1 cut(s) 223
Hin1I GRCGYC 1 cut(s) 831
Hin1II CATG 2 cut(s) 63, 734
Hin6I GCGC 1 cut(s) 221
HinP1I GCGC 1 cut(s) 221
HincII GTYRAC 1 cut(s) 778
HindII GTYRAC 1 cut(s) 778
HinfI GANTC 3 cut(s) 31, 192, 848
HpaII CCGG 3 cut(s) 322, 627, 660
HphI GGTGA 4 cut(s) 28, 130, 322, 323
Hpy166II GTNNAC 6 cut(s) 73, 339, 508, 548, 619, 778
Hpy188I TCNGA 4 cut(s) 300, 800, 843, 855
Hpy188III TCNNGA 1 cut(s) 522
Hpy8I GTNNAC 6 cut(s) 73, 339, 508, 548, 619, 778
Hpy99I CGWCG 1 cut(s) 864
HpyAV CCTTC 2 cut(s) 564, 704
HpyCH4III ACNGT 1 cut(s) 573
HpyCH4IV ACGT 3 cut(s) 450, 510, 831
HpyCH4V TGCA 2 cut(s) 167, 734
HpyF10VI GCNNNNNNNGC 1 cut(s) 809
HpyF3I CTNAG 3 cut(s) 82, 745, 852
HpySE526I ACGT 3 cut(s) 450, 510, 831
Hsp92I GRCGYC 1 cut(s) 831
Hsp92II CATG 2 cut(s) 63, 734
HspAI GCGC 1 cut(s) 221
KpnI GGTACC 1 cut(s) 328
Kzo9I GATC 2 cut(s) 402, 696
LmnI GCTCC 2 cut(s) 130, 524
Lsp1109I GCAGC 3 cut(s) 133, 148, 151
LweI GCATC 1 cut(s) 846
MaeI CTAG 3 cut(s) 542, 614, 761
MaeII ACGT 3 cut(s) 450, 510, 831
MaeIII GTNAC 2 cut(s) 193, 629
MalI GATC 2 cut(s) 404, 698
MboI GATC 2 cut(s) 402, 696
MboII GAAGA 2 cut(s) 457, 479
MfeI CAATTG 2 cut(s) 679, 813
MflI RGATCY 2 cut(s) 402, 696
MhlI GDGCHC 1 cut(s) 317
MluCI AATT 3 cut(s) 64, 679, 813
MlyI GAGTC 2 cut(s) 25, 201
MmeI TCCRAC 2 cut(s) 380, 866
MnlI CCTC 8 cut(s) 91, 113, 122, 367, 369, 431, 448, 576
Mph1103I ATGCAT 1 cut(s) 736
MseI TTAA 1 cut(s) 873
MspA1I CMGCKG 1 cut(s) 86
MspCI CTTAAG 1 cut(s) 872
MspI CCGG 3 cut(s) 322, 627, 660
MspR9I CCNGG 1 cut(s) 142
MunI CAATTG 2 cut(s) 679, 813
MvaI CCWGG 1 cut(s) 142
MwoI GCNNNNNNNGC 1 cut(s) 809
NcoI CCATGG 1 cut(s) 59
NdeI CATATG 2 cut(s) 393, 635
NdeII GATC 2 cut(s) 402, 696
NlaIII CATG 2 cut(s) 63, 734
NlaIV GGNNCC 3 cut(s) 326, 404, 698
NmeAIII GCCGAG 1 cut(s) 602
NmuCI GTSAC 2 cut(s) 193, 629
NsbI TGCGCA 1 cut(s) 222
NsiI ATGCAT 1 cut(s) 736
PceI AGGCCT 1 cut(s) 759
PfeI GAWTC 1 cut(s) 848
PinAI ACCGGT 1 cut(s) 321
PkrI GCNGC 4 cut(s) 88, 148, 163, 166
PleI GAGTC 2 cut(s) 25, 200
PpsI GAGTC 2 cut(s) 25, 200
Ppu21I YACGTR 1 cut(s) 511
Psp1406I AACGTT 1 cut(s) 450
Psp6I CCWGG 1 cut(s) 140
PspGI CCWGG 1 cut(s) 140
PspN4I GGNNCC 3 cut(s) 326, 404, 698
PspPI GGNCC 1 cut(s) 100
PsuI RGATCY 2 cut(s) 402, 696
RsaI GTAC 5 cut(s) 42, 326, 496, 507, 881
RsaNI GTAC 5 cut(s) 41, 325, 495, 506, 880
SalI GTCGAC 1 cut(s) 776
SaqAI TTAA 1 cut(s) 873
SatI GCNGC 4 cut(s) 87, 147, 162, 165
Sau3AI GATC 2 cut(s) 402, 696
Sau96I GGNCC 1 cut(s) 100
ScaI AGTACT 1 cut(s) 881
SchI GAGTC 2 cut(s) 25, 201
ScrFI CCNGG 1 cut(s) 142
SduI GDGCHC 1 cut(s) 317
SfaNI GCATC 1 cut(s) 846
SfcI CTRYAG 1 cut(s) 478
SgrAI CRCCGGYG 1 cut(s) 659
SmlI CTYRAG 1 cut(s) 872
SmoI CTYRAG 1 cut(s) 872
Sse9I AATT 3 cut(s) 64, 679, 813
SseBI AGGCCT 1 cut(s) 759
SsiI CCGC 1 cut(s) 86
SspMI CTAG 3 cut(s) 542, 614, 761
StuI AGGCCT 1 cut(s) 759
StyD4I CCNGG 1 cut(s) 140
StyI CCWWGG 3 cut(s) 59, 369, 541
TaaI ACNGT 1 cut(s) 573
TaiI ACGT 3 cut(s) 453, 513, 834
TaqI TCGA 4 cut(s) 252, 427, 751, 777
TasI AATT 3 cut(s) 64, 679, 813
TatI WGTACW 2 cut(s) 40, 879
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 1 cut(s) 848
Tru1I TTAA 1 cut(s) 873
Tru9I TTAA 1 cut(s) 873
TscAI CASTG 1 cut(s) 476
TseFI GTSAC 2 cut(s) 193, 629
TseI GCWGC 3 cut(s) 146, 161, 164
Tsp45I GTSAC 2 cut(s) 193, 629
TspDTI ATGAA 3 cut(s) 122, 476, 479
TspGWI ACGGA 1 cut(s) 117
TspRI CASTG 1 cut(s) 476
Vha464I CTTAAG 1 cut(s) 872
XapI RAATTY 1 cut(s) 64
XmaJI CCTAGG 1 cut(s) 541
XmiI GTMKAC 2 cut(s) 72, 777
XspI CTAG 3 cut(s) 542, 614, 761
ZraI GACGTC 1 cut(s) 832
ZrmI AGTACT 1 cut(s) 881
Zsp2I ATGCAT 1 cut(s) 736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.