Rmu_sc0000091.1_g000002

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000091.1
OG0000400
Physical Location & Seq
Forward (+)
1532 .. 2854
1323 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000091.1_g000002.1.cds

Sequence Viewer

Length: 1323 bp
atgcggtggcatgaacctaatgctgaagaggcggtagaaattcttgatggcctgaaaccacacaagaatttgaaaaagctagttatacatggttatccaggaatcagatttccagattggaaactgccaaatctgattgcagttgatttgtccaattgtaagaactgtgaatatcttccagcccttgggaatcttcttctactcaagactctttctctgcgtggaatggagagcgtgacgcgcattggctttgagttccatggtgatagtacagatatttgcttttcatcacttgaagaattatcgctcagtgattttccgaaattggaaacctggtcgagtgcaaataatgaaaatgcatttccgagcttgaggaagttaaccatacgtaggtgtcccaagttgacacagatcccattttgtttgtctcttcaacatttggagctgcgggattgtaatccatcttcaatcttcattggaggtttaactttgctgacagtgcttgtaatagaaaaacttccacagctgcgcactctaccacaagggctttctgcatcagttagtctgtcttctctggaggtcttatcttgccccaagctttgttcactgccttcggagatgggaaacctcactgcactgaaatcattgaccattcgttggtgtgatgagttgtcctctctgccacagagtttgcagaacctcaaagctctggaatcactagagattagtgactgtcatagtataatctcgatgccagatggtgcaattggaggtttgagttcccttcaaactttgtccattgagaactgcagtagtctgacttctttgtcttcgagtctggaacaactcgctttccttgagcggttcaccattatgtactgtccaaaccttggttctttcccagagggtgtgcaacacctctcaacccttcgaactttgtctatcttgagctgtccttggtttgattctttgccagaagggttgcaaatggtcaagacgttgcagtgtctggaaattagtagctgcccgaatttcacagctttgccagagtgggttgagaagcttgcttcactcagatctttgaccatttttgattgtcctaatttgaaactgttgccacaaagtctagaacttctcactaaactccagcacctctctattcaagaatgtcccgagcttgaggaaagatgtagacaaggcagtggtgaggattggctgaaaatagctcatgttccacataagtacattggatcaccagagatgaggcggtccagtagtgaagcaagtacatcgggcagctcttctgttgaaacatctgtatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 map03460
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

440

Amino Acids

48.72

Weight (kDa)

5.48

Isoelectric Point (pI)

61.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000400)

Species Orthologous Gene IDs
malus_domestica MD05G1050700.v1.1 MD05G1050800.v1.1 MD08G1110700.v1.1 MD15G1090000.v1.1 MD15G1090100.v1.1 MD15G1090300.v1.1
prunus_persica Prupe.1G541300_v2.0.a1 Prupe.1G541300_v2.0.a1 Prupe.8G077100_v2.0.a1 Prupe.8G077200_v2.0.a1 Prupe.8G077500_v2.0.a1 Prupe.8G077600_v2.0.a1 Prupe.8G211300_v2.0.a1
pyrus_communis pycom05g04280 pycom08g09220 pycom15g08440
rosa_chinensis RchiOBHm_Chr1g0348461 RchiOBHm_Chr1g0348561 RchiOBHm_Chr6g0269201 RchiOBHm_Chr6g0269411 RchiOBHm_Chr6g0269421 RchiOBHm_Chr6g0269431 RchiOBHm_Chr7g0232901 RchiOBHm_Chr7g0232931 RchiOBHm_Chr7g0232961 RchiOBHm_Chr7g0232971
rosa_laevigata RLG00000001310
rosa_multiflora Rmu_sc0000091.1_g000001 Rmu_sc0000091.1_g000002 Rmu_sc0000091.1_g000008 Rmu_sc0000743.1_g000003 Rmu_sc0000743.1_g000004 Rmu_sc0005353.1_g000002 Rmu_sc0008668.1_g000002 Rmu_sc0015938.1_g000001 Rmu_ssc0000018.1_g000023 Rmu_ssc0000291.1_g000019 Rmu_ssc0000291.1_g000020 Rmu_ssc0000291.1_g000026 Rmu_ssc0000291.1_g000027
rosa_roxburghii Rroxscaffold_3G00227800 Rroxscaffold_3G00227820 Rroxscaffold_4G00306930 Rroxscaffold_4G00306950 Rroxscaffold_7G00198730
rosa_rugosa Rorug01G0194900 Rorug01G0194900 Rorug01G0195000 Rorug01G0195100 Rorug06G0045900 Rorug06G0046100 Rorug06G0047500 Rorug06G0047500 Rorug06G0047600 Rorug06G0047700 Rorug07G0276400 Rorug07G0276600 Rorug07G0276800.1 Rorug07G0276900
rosa_samantha Rh1AG213000 Rh1AG213100 Rh1BG179500 Rh1CG197300 Rh1CG197400 Rh1DG209600 Rh6AG166200 Rh6AG168000 Rh6AG168100 Rh6AG168200 Rh6BG171700 Rh6BG171800 Rh6BG173500 Rh6CG165300 Rh6CG167500 Rh6CG167600 Rh6DG156900 Rh6DG159400 Rh6DG159500 Rh6DG159600 Rh7AG431600 Rh7AG431700 Rh7AG431800 Rh7AG432100 Rh7AG432200 Rh7BG404700 Rh7BG404800 Rh7BG404900 Rh7BG405000 Rh7CG450600 Rh7CG450700 Rh7CG450800 Rh7CG451200 Rh7DG421300
rosa_wichuraiana Rw0G004710 Rw0G010410 Rw1G018020 Rw1G018040 Rw6G014350 Rw6G014450 Rw6G014470 Rw7G035660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 826
Acc16I TGCGCA 1 cut(s) 530
AccB7I CCANNNNNTGG 3 cut(s) 185, 657, 890
AccBSI CCGCTC 1 cut(s) 862
AccI GTMKAC 1 cut(s) 1192
AccII CGCG 1 cut(s) 241
AciI CCGC 5 cut(s) 4, 32, 448, 862, 1267
AclWI GGATC 2 cut(s) 406, 1258
AcsI RAATTY 3 cut(s) 39, 67, 1030
AcuI CTGAAG 1 cut(s) 45
AfaI GTAC 4 cut(s) 271, 878, 1244, 1288
AfiI CCNNNNNNNGG 4 cut(s) 185, 390, 657, 890
AgsI TTSAA 8 cut(s) 73, 296, 434, 468, 788, 1108, 1163, 1310
AjnI CCWGG 2 cut(s) 97, 332
AjuI GAANNNNNNNTTGG 2 cut(s) 877, 909
Alw26I GTCTC 1 cut(s) 432
AlwI GGATC 2 cut(s) 406, 1258
AlwNI CAGNNNCTG 1 cut(s) 1009
Ama87I CYCGRG 1 cut(s) 1172
AoxI GGCC 1 cut(s) 49
ApeKI GCWGC 4 cut(s) 445, 526, 1023, 1296
ApoI RAATTY 3 cut(s) 39, 67, 1030
Asp700I GAANNNNTTC 2 cut(s) 174, 516
AspLEI GCGC 2 cut(s) 243, 531
AspS9I GGNCC 1 cut(s) 1269
AsuHPI GGTGA 4 cut(s) 275, 859, 1217, 1245
AsuII TTCGAA 1 cut(s) 931
AvaI CYCGRG 1 cut(s) 1172
AvaII GGWCC 1 cut(s) 1269
BarI GAAGNNNNNNTAC 4 cut(s) 448, 480, 805, 837
BbsI GAAGAC 2 cut(s) 561, 822
BbvI GCAGC 4 cut(s) 432, 513, 1010, 1308
BccI CCATC 4 cut(s) 41, 469, 613, 752
BcgI CGANNNNNNTGC 2 cut(s) 1272, 1306
BciT130I CCWGG 2 cut(s) 99, 334
BcoDI GTCTC 1 cut(s) 432
BfaI CTAG 3 cut(s) 80, 719, 1127
BfmI CTRYAG 1 cut(s) 808
BglII AGATCT 1 cut(s) 1076
BisI GCNGC 4 cut(s) 446, 527, 1024, 1297
BlsI GCNGC 4 cut(s) 447, 528, 1025, 1298
Bme1390I CCNGG 2 cut(s) 99, 334
Bme18I GGWCC 1 cut(s) 1269
BmeT110I CYCGRG 1 cut(s) 1172
BmgT120I GGNCC 1 cut(s) 1269
BmrFI CCNGG 2 cut(s) 99, 334
BmsI GCATC 2 cut(s) 563, 741
BpiI GAAGAC 2 cut(s) 561, 822
BplI GAGNNNNNCTC 2 cut(s) 659, 691
BpmI CTGGAG 2 cut(s) 596, 1130
Bpu14I TTCGAA 1 cut(s) 931
BpuEI CTTGAG 5 cut(s) 188, 391, 878, 967, 1199
BsaAI YACGTR 1 cut(s) 389
BsaBI GATNNNNATC 1 cut(s) 456
BsaJI CCNNGG 4 cut(s) 184, 259, 889, 956
Bsc4I CCNNNNNNNGG 4 cut(s) 185, 390, 657, 890
Bse1I ACTGG 1 cut(s) 1272
Bse8I GATNNNNATC 1 cut(s) 456
BseBI CCWGG 2 cut(s) 99, 334
BseDI CCNNGG 4 cut(s) 184, 259, 889, 956
BseJI GATNNNNATC 1 cut(s) 456
BseLI CCNNNNNNNGG 4 cut(s) 185, 390, 657, 890
BseMII CTCAG 2 cut(s) 322, 1087
BseNI ACTGG 1 cut(s) 1272
BseXI GCAGC 4 cut(s) 432, 513, 1010, 1308
BsgI GTGCAG 1 cut(s) 618
Bsh1236I CGCG 1 cut(s) 241
BshFI GGCC 1 cut(s) 51
BsiHKCI CYCGRG 1 cut(s) 1172
BslFI GGGAC 2 cut(s) 381, 1155
BslI CCNNNNNNNGG 4 cut(s) 185, 390, 657, 890
BsmAI GTCTC 1 cut(s) 432
BsmFI GGGAC 2 cut(s) 381, 1155
BsnI GGCC 1 cut(s) 51
BsoBI CYCGRG 1 cut(s) 1172
Bsp119I TTCGAA 1 cut(s) 931
Bsp143I GATC 3 cut(s) 411, 1076, 1250
Bsp19I CCATGG 1 cut(s) 259
BspACI CCGC 5 cut(s) 4, 32, 448, 862, 1267
BspANI GGCC 1 cut(s) 51
BspCNI CTCAG 2 cut(s) 321, 1086
BspFNI CGCG 1 cut(s) 241
BspMAI CTGCAG 1 cut(s) 812
BspPI GGATC 2 cut(s) 406, 1258
BspQI GCTCTTC 1 cut(s) 1306
BspT104I TTCGAA 1 cut(s) 931
BsrBI CCGCTC 1 cut(s) 862
BsrI ACTGG 1 cut(s) 1272
BssECI CCNNGG 4 cut(s) 184, 259, 889, 956
BssMI GATC 3 cut(s) 411, 1076, 1250
BssT1I CCWWGG 4 cut(s) 184, 259, 889, 956
Bst2UI CCWGG 2 cut(s) 99, 334
Bst4CI ACNGT 5 cut(s) 167, 499, 734, 881, 1113
Bst6I CTCTTC 3 cut(s) 21, 435, 1306
BstBAI YACGTR 1 cut(s) 389
BstBI TTCGAA 1 cut(s) 931
BstC8I GCNNGC 1 cut(s) 1065
BstDEI CTNAG 2 cut(s) 308, 1073
BstDSI CCRYGG 1 cut(s) 259
BstFNI CGCG 1 cut(s) 241
BstHHI GCGC 2 cut(s) 243, 531
BstKTI GATC 3 cut(s) 414, 1079, 1253
BstMAI GTCTC 1 cut(s) 432
BstMBI GATC 3 cut(s) 411, 1076, 1250
BstMWI GCNNNNNNNGC 3 cut(s) 29, 240, 499
BstNI CCWGG 2 cut(s) 99, 334
BstSCI CCNGG 2 cut(s) 97, 332
BstSFI CTRYAG 1 cut(s) 808
BstSNI TACGTA 1 cut(s) 389
BstUI CGCG 1 cut(s) 241
BstV1I GCAGC 4 cut(s) 432, 513, 1010, 1308
BstV2I GAAGAC 2 cut(s) 561, 822
BstX2I RGATCY 2 cut(s) 411, 1076
BstYI RGATCY 2 cut(s) 411, 1076
BsuRI GGCC 1 cut(s) 51
BtgI CCRYGG 1 cut(s) 259
BtsI GCAGTG 4 cut(s) 605, 630, 1010, 1207
BtsIMutI CAGTG 7 cut(s) 316, 504, 605, 630, 635, 1010, 1207
Cac8I GCNNGC 1 cut(s) 1065
CaiI CAGNNNCTG 1 cut(s) 1009
CfoI GCGC 2 cut(s) 243, 531
Cfr13I GGNCC 1 cut(s) 1269
CseI GACGC 1 cut(s) 247
CsiI ACCWGGT 1 cut(s) 332
Csp6I GTAC 4 cut(s) 270, 877, 1243, 1287
CspCI CAANNNNNGTGG 2 cut(s) 672, 707
CviAII CATG 4 cut(s) 11, 89, 260, 1229
CviQI GTAC 4 cut(s) 270, 877, 1243, 1287
DdeI CTNAG 2 cut(s) 308, 1073
DpnI GATC 3 cut(s) 413, 1078, 1252
DpnII GATC 3 cut(s) 411, 1076, 1250
DrdI GACNNNNNNGTC 1 cut(s) 826
DseDI GACNNNNNNGTC 1 cut(s) 826
Eam1104I CTCTTC 3 cut(s) 21, 435, 1306
EarI CTCTTC 3 cut(s) 21, 435, 1306
Eco105I TACGTA 1 cut(s) 389
Eco130I CCWWGG 4 cut(s) 184, 259, 889, 956
Eco47I GGWCC 1 cut(s) 1269
Eco57I CTGAAG 1 cut(s) 45
Eco88I CYCGRG 1 cut(s) 1172
EcoRII CCWGG 2 cut(s) 97, 332
EcoT14I CCWWGG 4 cut(s) 184, 259, 889, 956
EcoT22I ATGCAT 1 cut(s) 361
ErhI CCWWGG 4 cut(s) 184, 259, 889, 956
FaeI CATG 4 cut(s) 14, 92, 263, 1232
FaqI GGGAC 2 cut(s) 381, 1155
FatI CATG 4 cut(s) 10, 88, 259, 1228
FauI CCCGC 1 cut(s) 441
FblI GTMKAC 1 cut(s) 1192
Fnu4HI GCNGC 4 cut(s) 446, 527, 1024, 1297
Fsp4HI GCNGC 4 cut(s) 446, 527, 1024, 1297
FspBI CTAG 3 cut(s) 80, 719, 1127
FspI TGCGCA 1 cut(s) 530
GlaI GCGC 2 cut(s) 242, 530
GluI GCNGC 4 cut(s) 446, 527, 1024, 1297
GsuI CTGGAG 2 cut(s) 596, 1130
HaeIII GGCC 1 cut(s) 51
HgaI GACGC 1 cut(s) 247
HhaI GCGC 2 cut(s) 243, 531
Hin1II CATG 4 cut(s) 14, 92, 263, 1232
Hin6I GCGC 2 cut(s) 241, 529
HinP1I GCGC 2 cut(s) 241, 529
HincII GTYRAC 2 cut(s) 381, 405
HindII GTYRAC 2 cut(s) 381, 405
HindIII AAGCTT 2 cut(s) 596, 1061
HinfI GANTC 6 cut(s) 102, 190, 208, 713, 835, 965
HpaI GTTAAC 1 cut(s) 381
HphI GGTGA 4 cut(s) 275, 859, 1217, 1245
Hpy166II GTNNAC 5 cut(s) 381, 405, 605, 867, 1193
Hpy188I TCNGA 7 cut(s) 107, 135, 321, 366, 616, 819, 1076
Hpy8I GTNNAC 5 cut(s) 381, 405, 605, 867, 1193
HpyAV CCTTC 4 cut(s) 621, 794, 938, 971
HpyCH4III ACNGT 5 cut(s) 167, 499, 734, 881, 1113
HpyCH4IV ACGT 2 cut(s) 388, 998
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 240, 499
HpyF3I CTNAG 2 cut(s) 308, 1073
HpySE526I ACGT 2 cut(s) 388, 998
Hsp92II CATG 4 cut(s) 14, 92, 263, 1232
HspAI GCGC 2 cut(s) 241, 529
KspAI GTTAAC 1 cut(s) 381
Kzo9I GATC 3 cut(s) 411, 1076, 1250
LguI GCTCTTC 1 cut(s) 1306
LmnI GCTCC 1 cut(s) 442
Lsp1109I GCAGC 4 cut(s) 432, 513, 1010, 1308
LweI GCATC 2 cut(s) 563, 741
MabI ACCWGGT 1 cut(s) 332
MaeI CTAG 3 cut(s) 80, 719, 1127
MaeII ACGT 2 cut(s) 388, 998
MaeIII GTNAC 2 cut(s) 235, 728
MalI GATC 3 cut(s) 413, 1078, 1252
MbiI CCGCTC 1 cut(s) 862
MboI GATC 3 cut(s) 411, 1076, 1250
MfeI CAATTG 2 cut(s) 154, 765
MflI RGATCY 2 cut(s) 411, 1076
MluCI AATT 9 cut(s) 39, 67, 154, 299, 323, 765, 1014, 1030, 1102
MlyI GAGTC 2 cut(s) 202, 844
Mph1103I ATGCAT 1 cut(s) 361
MroXI GAANNNNTTC 2 cut(s) 174, 516
MseI TTAA 2 cut(s) 380, 485
MslI CAYNNNNRTG 1 cut(s) 872
MspA1I CMGCKG 1 cut(s) 526
MspR9I CCNGG 2 cut(s) 99, 334
MunI CAATTG 2 cut(s) 154, 765
MvaI CCWGG 2 cut(s) 99, 334
MvnI CGCG 1 cut(s) 241
MwoI GCNNNNNNNGC 3 cut(s) 29, 240, 499
NcoI CCATGG 1 cut(s) 259
NdeII GATC 3 cut(s) 411, 1076, 1250
NlaIII CATG 4 cut(s) 14, 92, 263, 1232
NmuCI GTSAC 2 cut(s) 235, 728
NsbI TGCGCA 1 cut(s) 530
NsiI ATGCAT 1 cut(s) 361
NspV TTCGAA 1 cut(s) 931
PciSI GCTCTTC 1 cut(s) 1306
PdmI GAANNNNTTC 2 cut(s) 174, 516
PfeI GAWTC 4 cut(s) 102, 190, 713, 965
PflMI CCANNNNNTGG 3 cut(s) 185, 657, 890
PfoI TCCNGGA 1 cut(s) 97
PkrI GCNGC 4 cut(s) 447, 528, 1025, 1298
PleI GAGTC 2 cut(s) 202, 843
PpsI GAGTC 2 cut(s) 202, 843
Ppu21I YACGTR 1 cut(s) 389
Psp6I CCWGG 2 cut(s) 97, 332
PspGI CCWGG 2 cut(s) 97, 332
PspPI GGNCC 1 cut(s) 1269
PstI CTGCAG 1 cut(s) 812
PstNI CAGNNNCTG 1 cut(s) 1009
PsuI RGATCY 2 cut(s) 411, 1076
PvuII CAGCTG 1 cut(s) 526
RsaI GTAC 4 cut(s) 271, 878, 1244, 1288
RsaNI GTAC 4 cut(s) 270, 877, 1243, 1287
RseI CAYNNNNRTG 1 cut(s) 872
SapI GCTCTTC 1 cut(s) 1306
SaqAI TTAA 2 cut(s) 380, 485
SatI GCNGC 4 cut(s) 446, 527, 1024, 1297
Sau3AI GATC 3 cut(s) 411, 1076, 1250
Sau96I GGNCC 1 cut(s) 1269
SchI GAGTC 2 cut(s) 202, 844
ScrFI CCNGG 2 cut(s) 99, 334
SexAI ACCWGGT 1 cut(s) 332
SfaNI GCATC 2 cut(s) 563, 741
SfcI CTRYAG 1 cut(s) 808
SfuI TTCGAA 1 cut(s) 931
SinI GGWCC 1 cut(s) 1269
SmiMI CAYNNNNRTG 1 cut(s) 872
SmlI CTYRAG 5 cut(s) 203, 370, 857, 946, 1178
SmoI CTYRAG 5 cut(s) 203, 370, 857, 946, 1178
SnaBI TACGTA 1 cut(s) 389
Sse9I AATT 9 cut(s) 39, 67, 154, 299, 323, 765, 1014, 1030, 1102
SsiI CCGC 5 cut(s) 4, 32, 448, 862, 1267
SspMI CTAG 3 cut(s) 80, 719, 1127
StyD4I CCNGG 2 cut(s) 97, 332
StyI CCWWGG 4 cut(s) 184, 259, 889, 956
TaaI ACNGT 5 cut(s) 167, 499, 734, 881, 1113
TaiI ACGT 2 cut(s) 391, 1001
TaqI TCGA 4 cut(s) 338, 749, 833, 931
TasI AATT 9 cut(s) 39, 67, 154, 299, 323, 765, 1014, 1030, 1102
TatI WGTACW 4 cut(s) 269, 876, 1242, 1286
TfiI GAWTC 4 cut(s) 102, 190, 713, 965
Tru1I TTAA 2 cut(s) 380, 485
Tru9I TTAA 2 cut(s) 380, 485
TscAI CASTG 7 cut(s) 316, 504, 612, 637, 642, 1010, 1207
TseFI GTSAC 2 cut(s) 235, 728
TseI GCWGC 4 cut(s) 445, 526, 1023, 1296
Tsp45I GTSAC 2 cut(s) 235, 728
TspDTI ATGAA 4 cut(s) 27, 276, 366, 463
TspRI CASTG 7 cut(s) 316, 504, 612, 637, 642, 1010, 1207
Van91I CCANNNNNTGG 3 cut(s) 185, 657, 890
VpaK11BI GGWCC 1 cut(s) 1269
XapI RAATTY 3 cut(s) 39, 67, 1030
XbaI TCTAGA 1 cut(s) 1126
XmiI GTMKAC 1 cut(s) 1192
XmnI GAANNNNTTC 2 cut(s) 174, 516
XspI CTAG 3 cut(s) 80, 719, 1127
Zsp2I ATGCAT 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.