MD15G1090300.v1.1

disease resistance

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
6276768 .. 6277997
1230 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1090300.v1.1.491

Sequence Viewer

Length: 1116 bp
ATGCTTCCTCGTAGGGCAAGTGGGCTTGTATCATTGCAGACTTTAAACTTAATTGGGTGCTACAATCTTCGCTATTTGCCTTTCTTGGGAAAGATGACCTGCCTCAGACATCTCAATCTAACTGGATGTGAACAATTAACTGACATGCCTGCTGGTATTGAAAGATTACATCAACTTCAGACATTGCCATTGTATGTCGCTAGCTTCAGCAGATCTGATATCCTTAAAACTCTGGACCAATTAAATCCTTTTCACAATTTGAACCTTAGTGCTCTGGAACAATTAAATCTTTATGGCAAGTTGAATCTAACACACTTAGAGACAGTATGGAATGCAGTGGAAGCGAAAACAGCTCGGCTAATGATGAAGAAAAATCTCGATTCATTGGGATTATACTGGGGAGCATACCAGCGGAGGTCCCAAGATGTGGACAAATCATTGGGGATAGTACCTAAACGCCGAGAAGCTTCAATGGTGGGATTCCAAGTTACACGTGCTGAAGAAATTCTCAACAGTTTACAGCCACCGAAAAATATAAAAAAGCTAGTTATAAATGGCTATCCAGGAATTAGATTTGCTGCTTGGGCTCTCCCGGAATATGTAATTGCAGTTGAAATTGCGAACTGCCAAAATTGTAGACATCTTCCAGCCCTTGGGAATCTTCTGCGGCTTAAGACTCTTTATCTGCATGGGATGCATGGCGTGAGGAGCATTGGTACAGAGTTCTACGGTGATGGTGCAGACATAAGATTTTCATCACTTGAAGAACTAAGACTCAGTGAATTTCCCAACTTGGAAGAGTGGTCAAGCACAAATAGCGAAAATTCATTCCCGAGCCTGAGGAAATTAACCGTTAAAAGATGTCCCAAGCTAGCACATATTCCATCGCCTCAGTCCCTTCAACATCTAGAGCTGCAAGATTGTAATCCAACGTTGACGTCTGTAGGAAGTTTAAGTCTGCTTTCTGTGCTTGTTCTAGAAAACATACCAGGCCTACTCACTTTCCCAGAAGGGTTCATTGCATCAGCTTGTCTGTCTTCTTTGAAGATCTTGTCCTGTCCCAAGCTTCGTTCACTGCCTTTGCAGATCAGAAACCTTACTGCTCTGAATCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

372

Amino Acids

41.58

Weight (kDa)

9.18

Isoelectric Point (pI)

59.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 11 - 285 1.5e-10 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 89 - 232 2e-24 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000400)

Species Orthologous Gene IDs
malus_domestica MD05G1050700.v1.1 MD05G1050800.v1.1 MD08G1110700.v1.1 MD15G1090000.v1.1 MD15G1090100.v1.1 MD15G1090300.v1.1
prunus_persica Prupe.1G541300_v2.0.a1 Prupe.1G541300_v2.0.a1 Prupe.8G077100_v2.0.a1 Prupe.8G077200_v2.0.a1 Prupe.8G077500_v2.0.a1 Prupe.8G077600_v2.0.a1 Prupe.8G211300_v2.0.a1
pyrus_communis pycom05g04280 pycom08g09220 pycom15g08440
rosa_chinensis RchiOBHm_Chr1g0348461 RchiOBHm_Chr1g0348561 RchiOBHm_Chr6g0269201 RchiOBHm_Chr6g0269411 RchiOBHm_Chr6g0269421 RchiOBHm_Chr6g0269431 RchiOBHm_Chr7g0232901 RchiOBHm_Chr7g0232931 RchiOBHm_Chr7g0232961 RchiOBHm_Chr7g0232971
rosa_laevigata RLG00000001310
rosa_multiflora Rmu_sc0000091.1_g000001 Rmu_sc0000091.1_g000002 Rmu_sc0000091.1_g000008 Rmu_sc0000743.1_g000003 Rmu_sc0000743.1_g000004 Rmu_sc0005353.1_g000002 Rmu_sc0008668.1_g000002 Rmu_sc0015938.1_g000001 Rmu_ssc0000018.1_g000023 Rmu_ssc0000291.1_g000019 Rmu_ssc0000291.1_g000020 Rmu_ssc0000291.1_g000026 Rmu_ssc0000291.1_g000027
rosa_roxburghii Rroxscaffold_3G00227800 Rroxscaffold_3G00227820 Rroxscaffold_4G00306930 Rroxscaffold_4G00306950 Rroxscaffold_7G00198730
rosa_rugosa Rorug01G0194900 Rorug01G0194900 Rorug01G0195000 Rorug01G0195100 Rorug06G0045900 Rorug06G0046100 Rorug06G0047500 Rorug06G0047500 Rorug06G0047600 Rorug06G0047700 Rorug07G0276400 Rorug07G0276600 Rorug07G0276800.1 Rorug07G0276900
rosa_samantha Rh1AG213000 Rh1AG213100 Rh1BG179500 Rh1CG197300 Rh1CG197400 Rh1DG209600 Rh6AG166200 Rh6AG168000 Rh6AG168100 Rh6AG168200 Rh6BG171700 Rh6BG171800 Rh6BG173500 Rh6CG165300 Rh6CG167500 Rh6CG167600 Rh6DG156900 Rh6DG159400 Rh6DG159500 Rh6DG159600 Rh7AG431600 Rh7AG431700 Rh7AG431800 Rh7AG432100 Rh7AG432200 Rh7BG404700 Rh7BG404800 Rh7BG404900 Rh7BG405000 Rh7CG450600 Rh7CG450700 Rh7CG450800 Rh7CG451200 Rh7DG421300
rosa_wichuraiana Rw0G004710 Rw0G010410 Rw1G018020 Rw1G018040 Rw6G014350 Rw6G014450 Rw6G014470 Rw7G035660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 551
AatII GACGTC 1 cut(s) 941
Acc36I ACCTGC 1 cut(s) 107
AccB7I CCANNNNNTGG 2 cut(s) 427, 653
AccI GTMKAC 1 cut(s) 637
AciI CCGC 2 cut(s) 412, 667
AclI AACGTT 1 cut(s) 932
AcsI RAATTY 3 cut(s) 504, 782, 823
AcuI CTGAAG 3 cut(s) 161, 190, 519
AcvI CACGTG 1 cut(s) 494
AcyI GRCGYC 1 cut(s) 938
AfaI GTAC 2 cut(s) 450, 718
AfiI CCNNNNNNNGG 3 cut(s) 86, 427, 653
AflII CTTAAG 1 cut(s) 671
AflIII ACRYGT 1 cut(s) 491
AgsI TTSAA 8 cut(s) 161, 262, 304, 471, 614, 764, 902, 1045
AjnI CCWGG 2 cut(s) 562, 988
AluBI AGCT 8 cut(s) 204, 353, 467, 544, 871, 913, 1028, 1066
AluI AGCT 8 cut(s) 204, 353, 467, 544, 871, 913, 1028, 1066
Alw21I GWGCWC 1 cut(s) 274
Alw26I GTCTC 1 cut(s) 314
Ama87I CYCGRG 1 cut(s) 832
AoxI GGCC 1 cut(s) 991
ApeKI GCWGC 2 cut(s) 578, 913
ApoI RAATTY 3 cut(s) 504, 782, 823
Asp700I GAANNNNTTC 1 cut(s) 504
AspS9I GGNCC 2 cut(s) 235, 417
AsuC2I CCSGG 1 cut(s) 593
AsuHPI GGTGA 1 cut(s) 743
AsuNHI GCTAGC 2 cut(s) 200, 871
AvaI CYCGRG 1 cut(s) 832
AvaII GGWCC 2 cut(s) 235, 417
AxyI CCTNAGG 1 cut(s) 839
BanII GRGCYC 1 cut(s) 589
BbrPI CACGTG 1 cut(s) 494
BbsI GAAGAC 1 cut(s) 1029
Bbv12I GWGCWC 1 cut(s) 274
BbvI GCAGC 2 cut(s) 565, 900
BccI CCATC 2 cut(s) 728, 892
BciT130I CCWGG 2 cut(s) 564, 990
BcnI CCSGG 1 cut(s) 593
BcoDI GTCTC 1 cut(s) 314
BfaI CTAG 5 cut(s) 201, 545, 872, 908, 977
BfmI CTRYAG 1 cut(s) 942
BfrI CTTAAG 1 cut(s) 671
BfuAI ACCTGC 1 cut(s) 107
BglII AGATCT 2 cut(s) 212, 1047
BisI GCNGC 3 cut(s) 579, 668, 914
BlsI GCNGC 3 cut(s) 580, 669, 915
Bme1390I CCNGG 3 cut(s) 564, 593, 990
Bme18I GGWCC 2 cut(s) 235, 417
BmeT110I CYCGRG 1 cut(s) 832
BmgT120I GGNCC 2 cut(s) 235, 417
BmiI GGNNCC 1 cut(s) 419
BmrFI CCNGG 3 cut(s) 564, 593, 990
BmrI ACTGGG 1 cut(s) 406
BmsI GCATC 2 cut(s) 684, 1031
BmtI GCTAGC 2 cut(s) 204, 875
BmuI ACTGGG 1 cut(s) 406
BpiI GAAGAC 1 cut(s) 1029
BpuMI CCSGG 1 cut(s) 593
BsaAI YACGTR 1 cut(s) 494
BsaBI GATNNNNATC 2 cut(s) 754, 924
BsaHI GRCGYC 1 cut(s) 938
BsaJI CCNNGG 1 cut(s) 652
BsaXI ACNNNNNCTCC 2 cut(s) 700, 730
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 427, 653
Bse1I ACTGG 2 cut(s) 127, 401
Bse21I CCTNAGG 1 cut(s) 839
Bse3DI GCAATG 3 cut(s) 32, 182, 1017
Bse8I GATNNNNATC 2 cut(s) 754, 924
BseBI CCWGG 2 cut(s) 564, 990
BseDI CCNNGG 1 cut(s) 652
BseGI GGATG 2 cut(s) 131, 699
BseJI GATNNNNATC 2 cut(s) 754, 924
BseLI CCNNNNNNNGG 3 cut(s) 86, 427, 653
BseMI GCAATG 3 cut(s) 32, 182, 1017
BseMII CTCAG 4 cut(s) 118, 790, 830, 905
BseNI ACTGG 2 cut(s) 127, 401
BseRI GAGGAG 1 cut(s) 721
BseXI GCAGC 2 cut(s) 565, 900
BsgI GTGCAG 1 cut(s) 759
BshFI GGCC 1 cut(s) 993
BsiHKAI GWGCWC 1 cut(s) 274
BsiHKCI CYCGRG 1 cut(s) 832
BsiSI CCGG 1 cut(s) 593
BslFI GGGAC 4 cut(s) 403, 849, 880, 1044
BslI CCNNNNNNNGG 3 cut(s) 86, 427, 653
BsmAI GTCTC 1 cut(s) 314
BsmFI GGGAC 4 cut(s) 403, 849, 880, 1044
BsmI GAATGC 1 cut(s) 337
BsnI GGCC 1 cut(s) 993
BsoBI CYCGRG 1 cut(s) 832
Bsp1286I GDGCHC 2 cut(s) 274, 589
Bsp143I GATC 3 cut(s) 212, 1047, 1086
BspACI CCGC 2 cut(s) 412, 667
BspANI GGCC 1 cut(s) 993
BspCNI CTCAG 4 cut(s) 117, 789, 831, 904
BspLI GGNNCC 1 cut(s) 419
BspMI ACCTGC 1 cut(s) 107
BspOI GCTAGC 2 cut(s) 204, 875
BspTI CTTAAG 1 cut(s) 671
BsrDI GCAATG 3 cut(s) 32, 182, 1017
BsrI ACTGG 2 cut(s) 127, 401
BssECI CCNNGG 1 cut(s) 652
BssMI GATC 3 cut(s) 212, 1047, 1086
BssNI GRCGYC 1 cut(s) 938
BssT1I CCWWGG 1 cut(s) 652
Bst2UI CCWGG 2 cut(s) 564, 990
Bst4CI ACNGT 4 cut(s) 325, 515, 731, 853
Bst6I CTCTTC 1 cut(s) 792
BstACI GRCGYC 1 cut(s) 938
BstAFI CTTAAG 1 cut(s) 671
BstAPI GCANNNNNTGC 1 cut(s) 694
BstBAI YACGTR 1 cut(s) 494
BstC8I GCNNGC 3 cut(s) 150, 202, 873
BstDEI CTNAG 7 cut(s) 104, 266, 316, 770, 776, 839, 891
BstF5I GGATG 2 cut(s) 131, 699
BstKTI GATC 3 cut(s) 215, 1050, 1089
BstMAI GTCTC 1 cut(s) 314
BstMBI GATC 3 cut(s) 212, 1047, 1086
BstMWI GCNNNNNNNGC 7 cut(s) 341, 350, 584, 694, 708, 816, 967
BstNI CCWGG 2 cut(s) 564, 990
BstNSI RCATGY 1 cut(s) 148
BstSCI CCNGG 3 cut(s) 562, 591, 988
BstSFI CTRYAG 1 cut(s) 942
BstV1I GCAGC 2 cut(s) 565, 900
BstV2I GAAGAC 1 cut(s) 1029
BstX2I RGATCY 2 cut(s) 212, 1047
BstYI RGATCY 2 cut(s) 212, 1047
Bsu36I CCTNAGG 1 cut(s) 839
BsuRI GGCC 1 cut(s) 993
BtgZI GCGATG 1 cut(s) 870
BtsCI GGATG 2 cut(s) 131, 699
BtsI GCAGTG 2 cut(s) 342, 1073
BtsIMutI CAGTG 3 cut(s) 342, 784, 1073
BveI ACCTGC 1 cut(s) 107
Cac8I GCNNGC 3 cut(s) 150, 202, 873
Cfr13I GGNCC 2 cut(s) 235, 417
Csp6I GTAC 2 cut(s) 449, 717
CviAII CATG 3 cut(s) 145, 689, 698
CviQI GTAC 2 cut(s) 449, 717
DdeI CTNAG 7 cut(s) 104, 266, 316, 770, 776, 839, 891
DpnI GATC 3 cut(s) 214, 1049, 1088
DpnII GATC 3 cut(s) 212, 1047, 1086
DraI TTTAAA 1 cut(s) 45
Eam1104I CTCTTC 1 cut(s) 792
EarI CTCTTC 1 cut(s) 792
Eco130I CCWWGG 1 cut(s) 652
Eco147I AGGCCT 1 cut(s) 993
Eco24I GRGCYC 1 cut(s) 589
Eco32I GATATC 1 cut(s) 220
Eco47I GGWCC 2 cut(s) 235, 417
Eco57I CTGAAG 3 cut(s) 161, 190, 519
Eco72I CACGTG 1 cut(s) 494
Eco81I CCTNAGG 1 cut(s) 839
Eco88I CYCGRG 1 cut(s) 832
EcoO109I RGGNCCY 1 cut(s) 417
EcoRII CCWGG 2 cut(s) 562, 988
EcoRV GATATC 1 cut(s) 220
EcoT14I CCWWGG 1 cut(s) 652
EcoT22I ATGCAT 1 cut(s) 699
EcoT38I GRGCYC 1 cut(s) 589
ErhI CCWWGG 1 cut(s) 652
FaeI CATG 3 cut(s) 148, 692, 701
FaqI GGGAC 4 cut(s) 403, 849, 880, 1044
FatI CATG 3 cut(s) 144, 688, 697
FblI GTMKAC 1 cut(s) 637
Fnu4HI GCNGC 3 cut(s) 579, 668, 914
FokI GGATG 2 cut(s) 138, 706
FriOI GRGCYC 1 cut(s) 589
Fsp4HI GCNGC 3 cut(s) 579, 668, 914
FspBI CTAG 5 cut(s) 201, 545, 872, 908, 977
GluI GCNGC 3 cut(s) 579, 668, 914
HaeIII GGCC 1 cut(s) 993
HapII CCGG 1 cut(s) 593
Hin1I GRCGYC 1 cut(s) 938
Hin1II CATG 3 cut(s) 148, 692, 701
HincII GTYRAC 1 cut(s) 936
HindII GTYRAC 1 cut(s) 936
HindIII AAGCTT 2 cut(s) 465, 1064
HinfI GANTC 7 cut(s) 304, 380, 480, 658, 676, 774, 1108
HpaII CCGG 1 cut(s) 593
HphI GGTGA 1 cut(s) 743
Hpy166II GTNNAC 6 cut(s) 131, 430, 518, 638, 936, 1073
Hpy188I TCNGA 5 cut(s) 107, 180, 217, 1091, 1107
Hpy188III TCNNGA 6 cut(s) 233, 275, 377, 832, 908, 977
Hpy8I GTNNAC 6 cut(s) 131, 430, 518, 638, 936, 1073
HpyAV CCTTC 2 cut(s) 908, 1004
HpyCH4III ACNGT 4 cut(s) 325, 515, 731, 853
HpyCH4IV ACGT 3 cut(s) 493, 932, 938
HpyCH4V TGCA 9 cut(s) 37, 335, 608, 688, 697, 740, 916, 1022, 1084
HpyF10VI GCNNNNNNNGC 7 cut(s) 341, 350, 584, 694, 708, 816, 967
HpyF3I CTNAG 7 cut(s) 104, 266, 316, 770, 776, 839, 891
HpySE526I ACGT 3 cut(s) 493, 932, 938
Hsp92I GRCGYC 1 cut(s) 938
Hsp92II CATG 3 cut(s) 148, 692, 701
Kzo9I GATC 3 cut(s) 212, 1047, 1086
LmnI GCTCC 2 cut(s) 401, 708
Lsp1109I GCAGC 2 cut(s) 565, 900
LweI GCATC 2 cut(s) 684, 1031
MaeI CTAG 5 cut(s) 201, 545, 872, 908, 977
MaeII ACGT 3 cut(s) 493, 932, 938
MaeIII GTNAC 1 cut(s) 487
MalI GATC 3 cut(s) 214, 1049, 1088
MboI GATC 3 cut(s) 212, 1047, 1086
MboII GAAGA 9 cut(s) 59, 379, 512, 635, 653, 776, 809, 1029, 1057
MflI RGATCY 2 cut(s) 212, 1047
MhlI GDGCHC 2 cut(s) 274, 589
MlyI GAGTC 2 cut(s) 670, 768
MmeI TCCRAC 1 cut(s) 953
MnlI CCTC 6 cut(s) 18, 113, 408, 699, 834, 900
Mph1103I ATGCAT 1 cut(s) 699
MroXI GAANNNNTTC 1 cut(s) 504
MspA1I CMGCKG 1 cut(s) 412
MspCI CTTAAG 1 cut(s) 671
MspI CCGG 1 cut(s) 593
MspR9I CCNGG 3 cut(s) 564, 593, 990
Mva1269I GAATGC 1 cut(s) 337
MvaI CCWGG 2 cut(s) 564, 990
MwoI GCNNNNNNNGC 7 cut(s) 341, 350, 584, 694, 708, 816, 967
NciI CCSGG 1 cut(s) 593
NdeII GATC 3 cut(s) 212, 1047, 1086
NheI GCTAGC 2 cut(s) 200, 871
NlaIII CATG 3 cut(s) 148, 692, 701
NlaIV GGNNCC 1 cut(s) 419
NmeAIII GCCGAG 2 cut(s) 334, 485
NsiI ATGCAT 1 cut(s) 699
NspI RCATGY 1 cut(s) 148
PceI AGGCCT 1 cut(s) 993
PctI GAATGC 1 cut(s) 337
PdmI GAANNNNTTC 1 cut(s) 504
PfeI GAWTC 5 cut(s) 304, 380, 480, 658, 1108
PflMI CCANNNNNTGG 2 cut(s) 427, 653
PfoI TCCNGGA 2 cut(s) 562, 591
PkrI GCNGC 3 cut(s) 580, 669, 915
PleI GAGTC 2 cut(s) 670, 768
PmaCI CACGTG 1 cut(s) 494
PmlI CACGTG 1 cut(s) 494
PpsI GAGTC 2 cut(s) 670, 768
Ppu21I YACGTR 1 cut(s) 494
PpuMI RGGWCCY 1 cut(s) 417
PsiI TTATAA 1 cut(s) 551
Psp1406I AACGTT 1 cut(s) 932
Psp5II RGGWCCY 1 cut(s) 417
Psp6I CCWGG 2 cut(s) 562, 988
PspCI CACGTG 1 cut(s) 494
PspGI CCWGG 2 cut(s) 562, 988
PspN4I GGNNCC 1 cut(s) 419
PspPI GGNCC 2 cut(s) 235, 417
PspPPI RGGWCCY 1 cut(s) 417
PsuI RGATCY 2 cut(s) 212, 1047
RsaI GTAC 2 cut(s) 450, 718
RsaNI GTAC 2 cut(s) 449, 717
SatI GCNGC 3 cut(s) 579, 668, 914
Sau3AI GATC 3 cut(s) 212, 1047, 1086
Sau96I GGNCC 2 cut(s) 235, 417
SchI GAGTC 2 cut(s) 670, 768
ScrFI CCNGG 3 cut(s) 564, 593, 990
SduI GDGCHC 2 cut(s) 274, 589
SfaNI GCATC 2 cut(s) 684, 1031
SfcI CTRYAG 1 cut(s) 942
SinI GGWCC 2 cut(s) 235, 417
SmlI CTYRAG 1 cut(s) 671
SmoI CTYRAG 1 cut(s) 671
SseBI AGGCCT 1 cut(s) 993
SsiI CCGC 2 cut(s) 412, 667
SspMI CTAG 5 cut(s) 201, 545, 872, 908, 977
StuI AGGCCT 1 cut(s) 993
StyD4I CCNGG 3 cut(s) 562, 591, 988
StyI CCWWGG 1 cut(s) 652
TaaI ACNGT 4 cut(s) 325, 515, 731, 853
TaiI ACGT 3 cut(s) 496, 935, 941
TaqI TCGA 1 cut(s) 378
TauI GCSGC 1 cut(s) 670
TfiI GAWTC 5 cut(s) 304, 380, 480, 658, 1108
TscAI CASTG 3 cut(s) 342, 784, 1080
TseI GCWGC 2 cut(s) 578, 913
TspDTI ATGAA 5 cut(s) 372, 380, 744, 816, 1006
TspRI CASTG 3 cut(s) 342, 784, 1080
Van91I CCANNNNNTGG 2 cut(s) 427, 653
Vha464I CTTAAG 1 cut(s) 671
VpaK11BI GGWCC 2 cut(s) 235, 417
XapI RAATTY 3 cut(s) 504, 782, 823
XbaI TCTAGA 2 cut(s) 907, 976
XceI RCATGY 1 cut(s) 148
XmiI GTMKAC 1 cut(s) 637
XmnI GAANNNNTTC 1 cut(s) 504
XspI CTAG 5 cut(s) 201, 545, 872, 908, 977
ZraI GACGTC 1 cut(s) 939
Zsp2I ATGCAT 1 cut(s) 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.