pycom15g08090

Lipolytic acyl hydrolase (LAH)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000265
Physical Location & Seq
Reverse (-)
5005775 .. 5006120
346 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 300 bp
ATGCAGGATGACACATTAACTGAACAAGTATCTTCTGTGGACATAGCCGACAAGAAGAATTTGGATGATCTTCTCAAAGTGGGTGAAGGCCTCTTGAAAAAACCAGTTTCTAGGGTTAATTTGGAGACTGGCAGGGTTGAGCCTTCAAAACACGAGTCCAATGAAGAGGCTCTCACTAGGTACACCATATCAATTACCAAAACCAGATATAAATTTTTACAGTTTCTGTGGTTTGCAAAACTATTATCTGAAGAGAAGTGGCTTCGCCTTGCAAAGTCGCCTGTTGCAAAGCCTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Patatin

Protein Analysis

100

Amino Acids

11.38

Weight (kDa)

8.89

Isoelectric Point (pI)

34.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000265)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26560
fragaria_vesca FvH4_2g34690 FvH4_2g34750 FvH4_2g34750 FvH4_2g34754 FvH4_2g34770 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34780 FvH4_2g34800 FvH4_2g34800 FvH4_2g34811 FvH4_4g24280 FvH4_4g24280
malus_domestica MD08G1104900.v1.1 MD08G1105100.v1.1 MD08G1105300.v1.1 MD08G1105500.v1.1 MD08G1105900.v1.1 MD15G1085500.v1.1 MD15G1085600.v1.1 MD15G1085800.v1.1 MD15G1085900.v1.1 MD15G1086000.v1.1 MD15G1086500.v1.1
prunus_persica Prupe.1G439600_v2.0.a1 Prupe.1G439700_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439800_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G439900_v2.0.a1 Prupe.1G440100_v2.0.a1
pyrus_communis pycom08g08620 pycom08g08640 pycom08g08650 pycom08g08680 pycom08g08700 pycom15g08080 pycom15g08090 pycom15g08110 pycom15g08140
rosa_chinensis RchiOBHm_Chr3g0482851 RchiOBHm_Chr3g0482871 RchiOBHm_Chr6g0307241 RchiOBHm_Chr6g0307291 RchiOBHm_Chr6g0307341 RchiOBHm_Chr6g0307351 RchiOBHm_Chr6g0307381 RchiOBHm_Chr6g0307391 RchiOBHm_Chr6g0307491 RchiOBHm_Chr6g0307661
rosa_laevigata RLG00000008291 RLG00000010711 RLG00000010718 RLG00000010719 RLG00000010721 RLG00000010722 RLG00000023319 RLG00000023320
rosa_multiflora Rmu_co8005452.1_g000001 Rmu_co8126120.1_g000001 Rmu_sc0000031.1_g000008 Rmu_sc0000031.1_g000009 Rmu_sc0000031.1_g000011 Rmu_sc0000031.1_g000020 Rmu_sc0001612.1_g000003 Rmu_sc0003419.1_g000004 Rmu_sc0005715.1_g000002 Rmu_sc0005715.1_g000003 Rmu_sc0010071.1_g000001 Rmu_sc0010071.1_g000008 Rmu_ssc0000175.1_g000026 Rmu_ssc0000175.1_g000028
rosa_roxburghii Rroxscaffold_2G00138670 Rroxscaffold_6G00398870 Rroxscaffold_7G00160950 Rroxscaffold_7G00160980 Rroxscaffold_7G00161030 Rroxscaffold_7G00161040 Rroxscaffold_7G00161060
rosa_rugosa Rorug03G0201600 Rorug03G0201900 Rorug05G0124400 Rorug06G0357900 Rorug06G0358000 Rorug06G0358200 Rorug06G0358300 Rorug06G0358400 Rorug06G0358700 Rorug06G0358800
rosa_samantha Rh2AG174100 Rh2AG174200 Rh2AG174600 Rh2BG015200 Rh2CG179000 Rh2CG179100 Rh2CG179200 Rh2CG181300 Rh2DG180400 Rh3AG250400 Rh3AG250600 Rh3BG286800 Rh3CG284300 Rh3DG279900 Rh5DG283200 Rh5DG283300 Rh5DG283400 Rh6AG468500 Rh6AG468700 Rh6BG431300 Rh6BG431600 Rh6BG431700 Rh6BG431800 Rh6BG431900 Rh6BG479000 Rh6BG479300 Rh6CG483700 Rh6CG483800 Rh6CG484700 Rh6DG470300 Rh6DG470400 Rh6DG470600 Rh6DG471300 Rh6DG471500
rosa_wichuraiana Rw3G022650 Rw3G022670 Rw6G040840 Rw6G040850 Rw6G040920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 58, 212
AcuI CTGAAG 1 cut(s) 270
AfaI GTAC 1 cut(s) 182
AgsI TTSAA 2 cut(s) 97, 147
Alw26I GTCTC 1 cut(s) 119
AlwNI CAGNNNCTG 1 cut(s) 226
AoxI GGCC 1 cut(s) 88
ApoI RAATTY 2 cut(s) 58, 212
ArsI GACNNNNNNTTYG 2 cut(s) 140, 172
AsuHPI GGTGA 1 cut(s) 95
BauI CACGAG 1 cut(s) 152
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 2 cut(s) 111, 177
Bse1I ACTGG 2 cut(s) 104, 133
BseGI GGATG 2 cut(s) 13, 70
BseNI ACTGG 2 cut(s) 104, 133
BshFI GGCC 1 cut(s) 90
BsmAI GTCTC 1 cut(s) 119
BsnI GGCC 1 cut(s) 90
Bsp143I GATC 1 cut(s) 67
BspANI GGCC 1 cut(s) 90
BsrI ACTGG 2 cut(s) 104, 133
BssMI GATC 1 cut(s) 67
BssSI CACGAG 1 cut(s) 152
Bst2BI CACGAG 1 cut(s) 152
Bst4CI ACNGT 1 cut(s) 222
Bst6I CTCTTC 2 cut(s) 159, 246
BstF5I GGATG 2 cut(s) 13, 70
BstKTI GATC 1 cut(s) 70
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 1 cut(s) 67
BsuRI GGCC 1 cut(s) 90
BtsCI GGATG 2 cut(s) 13, 70
CaiI CAGNNNCTG 1 cut(s) 226
Csp6I GTAC 1 cut(s) 181
CviJI RGCY 6 cut(s) 47, 90, 142, 170, 262, 292
CviKI_1 RGCY 6 cut(s) 47, 90, 142, 170, 262, 292
CviQI GTAC 1 cut(s) 181
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
Eam1104I CTCTTC 2 cut(s) 159, 246
EarI CTCTTC 2 cut(s) 159, 246
Eco147I AGGCCT 1 cut(s) 90
Eco57I CTGAAG 1 cut(s) 270
FaiI YATR 3 cut(s) 44, 188, 210
FokI GGATG 2 cut(s) 20, 77
FspBI CTAG 2 cut(s) 111, 177
HaeIII GGCC 1 cut(s) 90
HinfI GANTC 1 cut(s) 155
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 2 cut(s) 40, 183
Hpy188I TCNGA 1 cut(s) 250
Hpy188III TCNNGA 1 cut(s) 94
Hpy8I GTNNAC 2 cut(s) 40, 183
HpyAV CCTTC 2 cut(s) 80, 153
HpyCH4III ACNGT 1 cut(s) 222
HpyCH4V TGCA 4 cut(s) 4, 236, 272, 287
Kzo9I GATC 1 cut(s) 67
LpnPI CCDG 5 cut(s) 114, 117, 118, 217, 294
MaeI CTAG 2 cut(s) 111, 177
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MboII GAAGA 5 cut(s) 24, 62, 67, 176, 263
MluCI AATT 4 cut(s) 58, 118, 192, 212
MlyI GAGTC 1 cut(s) 164
MnlI CCTC 2 cut(s) 101, 160
MseI TTAA 2 cut(s) 17, 117
NdeII GATC 1 cut(s) 67
PceI AGGCCT 1 cut(s) 90
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PstNI CAGNNNCTG 1 cut(s) 226
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SaqAI TTAA 2 cut(s) 17, 117
Sau3AI GATC 1 cut(s) 67
SchI GAGTC 1 cut(s) 164
SetI ASST 1 cut(s) 182
Sse9I AATT 4 cut(s) 58, 118, 192, 212
SseBI AGGCCT 1 cut(s) 90
SspMI CTAG 2 cut(s) 111, 177
StuI AGGCCT 1 cut(s) 90
TaaI ACNGT 1 cut(s) 222
TasI AATT 4 cut(s) 58, 118, 192, 212
Tru1I TTAA 2 cut(s) 17, 117
Tru9I TTAA 2 cut(s) 17, 117
TspDTI ATGAA 1 cut(s) 177
XapI RAATTY 2 cut(s) 58, 212
XspI CTAG 2 cut(s) 111, 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.