Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000710

Physical Location & Seq

Genomic Coordinates Reverse (-)

62231672 .. 62237117

Gene Structure 5446 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGATTACTGTGAAGAAGAAAGGGAAGACATGGAGTTGCCGCTATTTGACTTCACCACTATTGCTGATGCCACTGATAACTTTTCAAGCAATAACAAACTGGGACAAGGTGGTTTTGGACCTGTGTACAAGGGTACATTGATAGGAGGGAAAGAAATAGCTGTAAAGAGGCGATCCAAGGAATCTGGTCAAGGAATGAGGGAGTTCAAAAATGAAGCTTGCGGATTCATCCCAAGAGATCATGAAGGCAAGCCAATTGTTGATGTCTCTAAAAATGGCGGAAGAGCTTCAGTGCCTATGGTCGAGGCTCTTGCTCTACGAGATGGCTTACAGCACACAACAAGGAAAGGAGTGAGGAAACTACAAGTTGAGGGAGATTCAAAACTAGTCATTGATGCAATCACAAAAAAGTTTAGCCCCCCTTGGAGAATACAGCAAATCATTGAGGACATTCACAACATTGCCTCGAAGTTTGAGGACATAACCTTCAAGCATATATTTAGGGAACCAAATTTTACGGCAGTTGCTTGTGCTCATCTTGGCTTAAACTGTAATAGAGAAAAGAGTTGGGAACCTTGGCTCCCATCTAGGATTGCTAGGGCTGTTCATTTTGATAATCTCGGGCATGCTTTCTCGATTATGGGATGGAGCCAATTGAAATTGGGTTTGTTGGAGCCAATTGAAATTGGGTTGAACTATGCTCATCATCGAAACTTGGTATCTCTCATTGGTTACTGCGATGAAGGTGACACTATGGCACTTGTTTTTGAGTATGTAGCCAATGGAAATTTGCAGCAACATTTATCAGGGTTGGATTATCTACATAATGGTTGCAAGCCACCTATAGTCCATAGAGGTCTGAAGGCTTCCAATATCTTGTTAAATGAAAAGTTGCAAGCCAAGATAGCTGATTTGGTCTTTCTAAAGTTCTTGCAACTGAAAGCGCCACTCATATATCAACTGATGCCAAAGGAACATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

327

Amino Acids

36.77

Weight (kDa)

7.21

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	74 - 179	2.1e-19	Reverse transcriptase-like
Pkinase	PF00069	233 - 312	4.9e-09	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000710)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18562 FvH4_2g17721 FvH4_2g21141 FvH4_2g33371 FvH4_3g14411 FvH4_3g25761 FvH4_3g27831 FvH4_4g02991 FvH4_4g13392 FvH4_4g17203 FvH4_4g27942 FvH4_5g15941 FvH4_5g16792 FvH4_5g24522 FvH4_5g27791 FvH4_5g35301 FvH4_6g16961 FvH4_6g18361 FvH4_6g18903 FvH4_6g21761 FvH4_6g31891
prunus_persica	Prupe.6G046000_v2.0.a1
pyrus_communis	pycom03g10270 pycom05g07740 pycom05g31010
rosa_chinensis	RchiOBHm_Chr1g0334811 RchiOBHm_Chr1g0356971 RchiOBHm_Chr1g0374401 RchiOBHm_Chr4g0404581
rosa_multiflora	Rmu_co8304929.1_g000001 Rmu_sc0001211.1_g000044 Rmu_sc0001651.1_g000019 Rmu_sc0001767.1_g000002 Rmu_sc0002248.1_g000001 Rmu_sc0002322.1_g000060 Rmu_sc0007034.1_g000034 Rmu_sc0007497.1_g000003 Rmu_sc0009436.1_g000009 Rmu_sc0010161.1_g000019 Rmu_ssc0000170.1_g000001
rosa_roxburghii	Rroxscaffold_3G00241750 Rroxscaffold_6G00400320 Rroxscaffold_7G00193750
rosa_rugosa	Rorug02G0062900 Rorug02G0235200 Rorug02G0436900 Rorug02G0593600 Rorug03G0104100 Rorug03G0181700 Rorug03G0204900 Rorug03G0234400 Rorug03G0264000 Rorug03G0264100 Rorug04G0142000 Rorug04G0183700 Rorug05G0147400 Rorug05G0276200 Rorug05G0339800 Rorug05G0353400 Rorug05G0417900 Rorug06G0461500 Rorug07G0017900 Rorug07G0067700 Rorug07G0166200 Rorug07G0205400
rosa_wichuraiana	Rw1G034260 Rw2G025350 Rw2G034810 Rw3G029390 Rw5G023470 Rw5G036860 Rw6G040600 Rw7G042610

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	41, 222, 279
AclWI	GGATC	1 cut(s)	168
AcsI	RAATTY	2 cut(s)	511, 787
AcuI	CTGAAG	2 cut(s)	273, 881
AfaI	GTAC	2 cut(s)	128, 136
AgsI	TTSAA	7 cut(s)	87, 208, 381, 490, 658, 683, 694
AhlI	ACTAGT	1 cut(s)	385
AloI	GAACNNNNNNTCC	2 cut(s)	564, 596
AluBI	AGCT	4 cut(s)	161, 218, 287, 908
AluI	AGCT	4 cut(s)	161, 218, 287, 908
Alw21I	GWGCWC	1 cut(s)	535
Alw26I	GTCTC	1 cut(s)	271
AlwI	GGATC	1 cut(s)	168
Ama87I	CYCGRG	1 cut(s)	620
ApeKI	GCWGC	1 cut(s)	793
ApoI	RAATTY	2 cut(s)	511, 787
Asp700I	GAANNNNTTC	1 cut(s)	286
AspLEI	GCGC	1 cut(s)	946
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	2 cut(s)	46, 758
AvaI	CYCGRG	1 cut(s)	620
AvaII	GGWCC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	535
BbvI	GCAGC	1 cut(s)	805
BccI	CCATC	3 cut(s)	317, 592, 639
BceAI	ACGGC	1 cut(s)	534
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BcoDI	GTCTC	1 cut(s)	271
BcuI	ACTAGT	1 cut(s)	385
BfaI	CTAG	3 cut(s)	386, 588, 597
BfmI	CTRYAG	1 cut(s)	843
BfoI	RGCGCY	1 cut(s)	947
BisI	GCNGC	2 cut(s)	41, 794
BlsI	GCNGC	2 cut(s)	42, 795
Bme18I	GGWCC	1 cut(s)	119
BmeT110I	CYCGRG	1 cut(s)	620
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	5 cut(s)	507, 573, 581, 650, 675
BmrI	ACTGGG	1 cut(s)	110
BmsI	GCATC	3 cut(s)	58, 385, 954
BmuI	ACTGGG	1 cut(s)	110
BpiI	GAAGAC	1 cut(s)	33
BsaJI	CCNNGG	3 cut(s)	177, 422, 575
BsaXI	ACNNNNNCTCC	2 cut(s)	564, 594
Bse1I	ACTGG	1 cut(s)	105
Bse3DI	GCAATG	1 cut(s)	459
BseDI	CCNNGG	3 cut(s)	177, 422, 575
BseGI	GGATG	3 cut(s)	228, 650, 976
BseMI	GCAATG	1 cut(s)	459
BseNI	ACTGG	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	805
BsiHKAI	GWGCWC	1 cut(s)	535
BsiHKCI	CYCGRG	1 cut(s)	620
BslFI	GGGAC	1 cut(s)	117
BsmAI	GTCTC	1 cut(s)	271
BsmFI	GGGAC	1 cut(s)	117
BsoBI	CYCGRG	1 cut(s)	620
Bsp1286I	GDGCHC	1 cut(s)	535
Bsp1407I	TGTACA	1 cut(s)	126
Bsp143I	GATC	2 cut(s)	173, 238
BspACI	CCGC	3 cut(s)	41, 222, 279
BspHI	TCATGA	1 cut(s)	241
BspLI	GGNNCC	5 cut(s)	507, 573, 581, 650, 675
BspPI	GGATC	1 cut(s)	168
BspQI	GCTCTTC	1 cut(s)	277
BsrDI	GCAATG	1 cut(s)	459
BsrGI	TGTACA	1 cut(s)	126
BsrI	ACTGG	1 cut(s)	105
BssECI	CCNNGG	3 cut(s)	177, 422, 575
BssMI	GATC	2 cut(s)	173, 238
BssT1I	CCWWGG	3 cut(s)	177, 422, 575
Bst4CI	ACNGT	2 cut(s)	11, 551
Bst6I	CTCTTC	1 cut(s)	277
BstAUI	TGTACA	1 cut(s)	126
BstC8I	GCNNGC	5 cut(s)	220, 251, 627, 836, 897
BstF5I	GGATG	3 cut(s)	228, 650, 976
BstH2I	RGCGCY	1 cut(s)	947
BstHHI	GCGC	1 cut(s)	946
BstKTI	GATC	2 cut(s)	176, 241
BstMAI	GTCTC	1 cut(s)	271
BstMBI	GATC	2 cut(s)	173, 238
BstMWI	GCNNNNNNNGC	1 cut(s)	905
BstNSI	RCATGY	1 cut(s)	629
BstSFI	CTRYAG	1 cut(s)	843
BstV1I	GCAGC	1 cut(s)	805
BstV2I	GAAGAC	1 cut(s)	33
BtgZI	GCGATG	1 cut(s)	753
BtsCI	GGATG	3 cut(s)	228, 650, 976
BtsIMutI	CAGTG	2 cut(s)	72, 297
Cac8I	GCNNGC	5 cut(s)	220, 251, 627, 836, 897
CciI	TCATGA	1 cut(s)	241
CfoI	GCGC	1 cut(s)	946
Cfr13I	GGNCC	1 cut(s)	119
Csp6I	GTAC	2 cut(s)	127, 135
CviAII	CATG	3 cut(s)	31, 242, 626
CviQI	GTAC	2 cut(s)	127, 135
DpnI	GATC	2 cut(s)	175, 240
DpnII	GATC	2 cut(s)	173, 238
Eam1104I	CTCTTC	1 cut(s)	277
EarI	CTCTTC	1 cut(s)	277
EciI	GGCGGA	1 cut(s)	294
Eco130I	CCWWGG	3 cut(s)	177, 422, 575
Eco47I	GGWCC	1 cut(s)	119
Eco57I	CTGAAG	2 cut(s)	273, 881
Eco88I	CYCGRG	1 cut(s)	620
EcoT14I	CCWWGG	3 cut(s)	177, 422, 575
ErhI	CCWWGG	3 cut(s)	177, 422, 575
FaeI	CATG	3 cut(s)	34, 245, 629
FaqI	GGGAC	1 cut(s)	117
FatI	CATG	3 cut(s)	30, 241, 625
Fnu4HI	GCNGC	2 cut(s)	41, 794
FokI	GGATG	3 cut(s)	215, 657, 963
Fsp4HI	GCNGC	2 cut(s)	41, 794
FspBI	CTAG	3 cut(s)	386, 588, 597
GlaI	GCGC	1 cut(s)	945
GluI	GCNGC	2 cut(s)	41, 794
HaeII	RGCGCY	1 cut(s)	947
HhaI	GCGC	1 cut(s)	946
Hin1II	CATG	3 cut(s)	34, 245, 629
Hin6I	GCGC	1 cut(s)	944
HinP1I	GCGC	1 cut(s)	944
HindIII	AAGCTT	1 cut(s)	216
HinfI	GANTC	3 cut(s)	182, 225, 377
HphI	GGTGA	2 cut(s)	46, 758
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	1 cut(s)	861
Hpy188III	TCNNGA	2 cut(s)	242, 634
Hpy8I	GTNNAC	1 cut(s)	127
HpyAV	CCTTC	4 cut(s)	239, 496, 737, 856
HpyCH4III	ACNGT	2 cut(s)	11, 551
HpyCH4V	TGCA	5 cut(s)	398, 793, 834, 895, 934
HpyF10VI	GCNNNNNNNGC	1 cut(s)	905
Hsp92II	CATG	3 cut(s)	34, 245, 629
HspAI	GCGC	1 cut(s)	944
Kzo9I	GATC	2 cut(s)	173, 238
LguI	GCTCTTC	1 cut(s)	277
LmnI	GCTCC	3 cut(s)	585, 648, 673
LpnPI	CCDG	4 cut(s)	86, 135, 171, 792
Lsp1109I	GCAGC	1 cut(s)	805
LweI	GCATC	3 cut(s)	58, 385, 954
MaeI	CTAG	3 cut(s)	386, 588, 597
MaeIII	GTNAC	2 cut(s)	731, 746
MalI	GATC	2 cut(s)	175, 240
MboI	GATC	2 cut(s)	173, 238
MboII	GAAGA	4 cut(s)	26, 29, 38, 294
MfeI	CAATTG	3 cut(s)	255, 653, 678
MhlI	GDGCHC	1 cut(s)	535
MluCI	AATT	7 cut(s)	255, 511, 653, 659, 678, 684, 787
MmeI	TCCRAC	2 cut(s)	651, 792
MroXI	GAANNNNTTC	1 cut(s)	286
MseI	TTAA	2 cut(s)	545, 881
MunI	CAATTG	3 cut(s)	255, 653, 678
MwoI	GCNNNNNNNGC	1 cut(s)	905
NdeII	GATC	2 cut(s)	173, 238
NlaIII	CATG	3 cut(s)	34, 245, 629
NlaIV	GGNNCC	5 cut(s)	507, 573, 581, 650, 675
NmuCI	GTSAC	1 cut(s)	746
NspI	RCATGY	1 cut(s)	629
PaeI	GCATGC	1 cut(s)	629
PagI	TCATGA	1 cut(s)	241
PciSI	GCTCTTC	1 cut(s)	277
PdmI	GAANNNNTTC	1 cut(s)	286
PfeI	GAWTC	3 cut(s)	182, 225, 377
PkrI	GCNGC	2 cut(s)	42, 795
PspN4I	GGNNCC	5 cut(s)	507, 573, 581, 650, 675
PspPI	GGNCC	1 cut(s)	119
RsaI	GTAC	2 cut(s)	128, 136
RsaNI	GTAC	2 cut(s)	127, 135
SapI	GCTCTTC	1 cut(s)	277
SaqAI	TTAA	2 cut(s)	545, 881
SatI	GCNGC	2 cut(s)	41, 794
Sau3AI	GATC	2 cut(s)	173, 238
Sau96I	GGNCC	1 cut(s)	119
SduI	GDGCHC	1 cut(s)	535
SfaNI	GCATC	3 cut(s)	58, 385, 954
SfcI	CTRYAG	1 cut(s)	843
SinI	GGWCC	1 cut(s)	119
SpeI	ACTAGT	1 cut(s)	385
SphI	GCATGC	1 cut(s)	629
Sse9I	AATT	7 cut(s)	255, 511, 653, 659, 678, 684, 787
SsiI	CCGC	3 cut(s)	41, 222, 279
SspMI	CTAG	3 cut(s)	386, 588, 597
StyI	CCWWGG	3 cut(s)	177, 422, 575
TaaI	ACNGT	2 cut(s)	11, 551
TaqI	TCGA	4 cut(s)	303, 467, 635, 709
TasI	AATT	7 cut(s)	255, 511, 653, 659, 678, 684, 787
TatI	WGTACW	1 cut(s)	126
TauI	GCSGC	1 cut(s)	43
TfiI	GAWTC	3 cut(s)	182, 225, 377
Tru1I	TTAA	2 cut(s)	545, 881
Tru9I	TTAA	2 cut(s)	545, 881
TscAI	CASTG	2 cut(s)	79, 297
TseFI	GTSAC	1 cut(s)	746
TseI	GCWGC	1 cut(s)	793
Tsp45I	GTSAC	1 cut(s)	746
TspDTI	ATGAA	6 cut(s)	217, 228, 258, 596, 756, 900
TspRI	CASTG	2 cut(s)	79, 297
VpaK11BI	GGWCC	1 cut(s)	119
XapI	RAATTY	2 cut(s)	511, 787
XceI	RCATGY	1 cut(s)	629
XmnI	GAANNNNTTC	1 cut(s)	286
XspI	CTAG	3 cut(s)	386, 588, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.