RchiOBHm_Chr0c40g0503411

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
OG0000292
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 645 bp
ATGAAATTCTCTGGCCTTTCTATTTGCAGAATTATTCCATGTTTAGAAAATGCAACATGTCCGAAAGATCTATCTCACTCTCTCCGTATAAATTGTGGTGGAAGTGTGATAGTTGTTAATGAAAATATCACCACACCCATAACATATGAAGCAGATAACGATGATGGTGGCCCTTCATCATTTTATAGCAAAAGCGATTGGGGGTCTAGCAGCACTGGTTATTACCCTGATGATAACACAGAAGACACCTTTATTGTGTATAATATATCTACACTCCCTATGCCCGATCCTCAGCTGTACATGACTGCACGTGTTTCACCCATCTCTCTAACTTATTTTGGGTTTTGCCTGATTAATGGAAACTACATAGTGAGGCTCCATTTTGCAGAGATAATGTTTACAAATGACAAAACATATCGTAGCTTGGGAAGGCGTATATTTGATGTTTACATTCAGGGGAAACGAGTGGAGAAGGATTTTAATATTGCGGATGTAGCAGGCGGGAATGGTATATTAGTTATAAGAAACTATACTGCTTCTGTAACAAATCATACCTTGGAGATTCGTTTCTTTTGGAATGGGAAAGGAACACAGGTTATCCCTAAAAAGGAGTCTATGGTCCTCTTATATCAGCCATTTCTGTAG

Protein Analysis

214

Amino Acids

24.08

Weight (kDa)

5.91

Isoelectric Point (pI)

33.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin PF11721 27 - 203 6e-39 Malectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000292)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53420 AT3G14840
fragaria_vesca FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17840 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17841 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17850 FvH4_3g17851
malus_domestica MD03G1246600.v1.1 MD06G1045200.v1.1 MD06G1045400.v1.1 MD11G1267800.v1.1 MD11G1267900.v1.1 MD11G1268100.v1.1 MD11G1268300.v1.1 MD11G1268500.v1.1 MD11G1268600.v1.1
prunus_persica Prupe.4G157700_v2.0.a1 Prupe.4G157700_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157800_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1 Prupe.4G157900_v2.0.a1
pyrus_communis pycom03g19540 pycom11g23600 pycom11g23630 pycom11g23690 pycom11g23720 pycom11g23730 pycom11g23740 pycom11g23750
rosa_chinensis RchiOBHm_Chr0c40g0503411 RchiOBHm_Chr0c40g0503421 RchiOBHm_Chr5g0029631 RchiOBHm_Chr5g0029661 RchiOBHm_Chr5g0029701 RchiOBHm_Chr5g0029741 RchiOBHm_Chr5g0029771 RchiOBHm_Chr5g0029781 RchiOBHm_Chr5g0029811 RchiOBHm_Chr5g0029851 RchiOBHm_Chr5g0029871 RchiOBHm_Chr5g0029891 RchiOBHm_Chr7g0222221
rosa_laevigata RLG00000017380 RLG00000032873 RLG00000033188 RLG00000033190 RLG00000033192 RLG00000033193 RLG00000033194 RLG00000033196 RLG00000033199 RLG00000033238
rosa_multiflora Rmu_co8359987.1_g000001 Rmu_co8444909.1_g000001 Rmu_sc0001608.1_g000007 Rmu_sc0001608.1_g000009 Rmu_sc0001608.1_g000013 Rmu_sc0001608.1_g000018 Rmu_sc0001608.1_g000023 Rmu_sc0001608.1_g000040 Rmu_sc0003238.1_g000016 Rmu_sc0003368.1_g000026 Rmu_sc0003368.1_g000034 Rmu_sc0003368.1_g000043 Rmu_sc0003368.1_g000047 Rmu_sc0003368.1_g000052 Rmu_sc0003368.1_g000054 Rmu_sc0004963.1_g000001
rosa_roxburghii Rroxscaffold_1G00050080 Rroxscaffold_1G00050090 Rroxscaffold_1G00050110 Rroxscaffold_1G00050120 Rroxscaffold_1G00050180 Rroxscaffold_1G00050190 Rroxscaffold_1G00050220 Rroxscaffold_1G00050270 Rroxscaffold_1G00050300
rosa_rugosa Rorug04G0065200 Rorug05G0114900 Rorug05G0115000 Rorug05G0115100 Rorug05G0120100 Rorug05G0238900
rosa_samantha Rh5AG207800 Rh5AG208000 Rh5AG208300 Rh5AG208400 Rh5AG208800 Rh5AG294900 Rh5AG295000 Rh5AG295400 Rh5CG230400 Rh7AG347800
rosa_wichuraiana Rw0G005370 Rw0G012460 Rw0G019060 Rw5G018910 Rw5G018920 Rw5G018930 Rw5G018940 Rw5G018960 Rw5G018970 Rw5G018980 Rw5G018990 Rw5G019000 Rw7G029840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 521
AciI CCGC 2 cut(s) 488, 501
AclWI GGATC 1 cut(s) 281
AcsI RAATTY 1 cut(s) 5
AcvI CACGTG 1 cut(s) 311
AfaI GTAC 1 cut(s) 299
AfiI CCNNNNNNNGG 1 cut(s) 607
AflIII ACRYGT 2 cut(s) 56, 310
AluBI AGCT 2 cut(s) 295, 423
AluI AGCT 2 cut(s) 295, 423
AlwI GGATC 1 cut(s) 281
AoxI GGCC 2 cut(s) 13, 169
ApeKI GCWGC 1 cut(s) 210
ApoI RAATTY 1 cut(s) 5
AseI ATTAAT 1 cut(s) 354
AspS9I GGNCC 2 cut(s) 170, 619
AsuHPI GGTGA 2 cut(s) 121, 309
AvaII GGWCC 1 cut(s) 619
BbrPI CACGTG 1 cut(s) 311
BbsI GAAGAC 1 cut(s) 249
BbvCI CCTCAGC 1 cut(s) 291
BbvI GCAGC 1 cut(s) 222
BccI CCATC 2 cut(s) 158, 329
BfaI CTAG 1 cut(s) 207
BfmI CTRYAG 1 cut(s) 641
BglII AGATCT 1 cut(s) 67
BisI GCNGC 1 cut(s) 211
BlsI GCNGC 1 cut(s) 212
Bme18I GGWCC 1 cut(s) 619
BmgT120I GGNCC 2 cut(s) 170, 619
BmiI GGNNCC 1 cut(s) 377
BpiI GAAGAC 1 cut(s) 249
Bpu10I CCTNAGC 1 cut(s) 291
BsaAI YACGTR 1 cut(s) 311
BsaJI CCNNGG 1 cut(s) 555
Bsc4I CCNNNNNNNGG 1 cut(s) 607
Bse1I ACTGG 1 cut(s) 220
BseDI CCNNGG 1 cut(s) 555
BseGI GGATG 1 cut(s) 496
BseLI CCNNNNNNNGG 1 cut(s) 607
BseMII CTCAG 1 cut(s) 305
BseNI ACTGG 1 cut(s) 220
BseXI GCAGC 1 cut(s) 222
BsgI GTGCAG 1 cut(s) 291
BshFI GGCC 2 cut(s) 15, 171
BslI CCNNNNNNNGG 1 cut(s) 607
BsnI GGCC 2 cut(s) 15, 171
Bsp1407I TGTACA 1 cut(s) 297
Bsp143I GATC 2 cut(s) 67, 286
BspACI CCGC 2 cut(s) 488, 501
BspANI GGCC 2 cut(s) 15, 171
BspCNI CTCAG 1 cut(s) 304
BspLI GGNNCC 1 cut(s) 377
BspPI GGATC 1 cut(s) 281
BsrGI TGTACA 1 cut(s) 297
BsrI ACTGG 1 cut(s) 220
BssECI CCNNGG 1 cut(s) 555
BssMI GATC 2 cut(s) 67, 286
BssT1I CCWWGG 1 cut(s) 555
BstAUI TGTACA 1 cut(s) 297
BstBAI YACGTR 1 cut(s) 311
BstC8I GCNNGC 1 cut(s) 499
BstDEI CTNAG 1 cut(s) 291
BstF5I GGATG 1 cut(s) 496
BstKTI GATC 2 cut(s) 70, 289
BstMBI GATC 2 cut(s) 67, 286
BstMWI GCNNNNNNNGC 1 cut(s) 494
BstNSI RCATGY 1 cut(s) 60
BstSFI CTRYAG 1 cut(s) 641
BstV1I GCAGC 1 cut(s) 222
BstV2I GAAGAC 1 cut(s) 249
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
BsuRI GGCC 2 cut(s) 15, 171
BtsCI GGATG 1 cut(s) 496
BtsIMutI CAGTG 1 cut(s) 213
Cac8I GCNNGC 1 cut(s) 499
Cfr13I GGNCC 2 cut(s) 170, 619
Csp6I GTAC 1 cut(s) 298
CviAII CATG 3 cut(s) 39, 57, 301
CviJI RGCY 6 cut(s) 15, 171, 295, 376, 423, 634
CviKI_1 RGCY 6 cut(s) 15, 171, 295, 376, 423, 634
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 1 cut(s) 291
DpnI GATC 2 cut(s) 69, 288
DpnII GATC 2 cut(s) 67, 286
Eco130I CCWWGG 1 cut(s) 555
Eco47I GGWCC 1 cut(s) 619
Eco72I CACGTG 1 cut(s) 311
EcoT14I CCWWGG 1 cut(s) 555
ErhI CCWWGG 1 cut(s) 555
FaeI CATG 3 cut(s) 42, 60, 304
FatI CATG 3 cut(s) 38, 56, 300
FauI CCCGC 1 cut(s) 494
FauNDI CATATG 1 cut(s) 145
Fnu4HI GCNGC 1 cut(s) 211
FokI GGATG 1 cut(s) 503
Fsp4HI GCNGC 1 cut(s) 211
FspBI CTAG 1 cut(s) 207
GluI GCNGC 1 cut(s) 211
HaeIII GGCC 2 cut(s) 15, 171
Hin1II CATG 3 cut(s) 42, 60, 304
HinfI GANTC 2 cut(s) 562, 611
HphI GGTGA 2 cut(s) 121, 309
Hpy166II GTNNAC 2 cut(s) 399, 448
Hpy188I TCNGA 1 cut(s) 63
Hpy8I GTNNAC 2 cut(s) 399, 448
HpyAV CCTTC 3 cut(s) 183, 423, 466
HpyCH4IV ACGT 1 cut(s) 310
HpyCH4V TGCA 4 cut(s) 27, 53, 308, 386
HpyF10VI GCNNNNNNNGC 1 cut(s) 494
HpyF3I CTNAG 1 cut(s) 291
HpySE526I ACGT 1 cut(s) 310
Hsp92II CATG 3 cut(s) 42, 60, 304
Kzo9I GATC 2 cut(s) 67, 286
LmnI GCTCC 1 cut(s) 381
LpnPI CCDG 6 cut(s) 201, 240, 362, 440, 483, 578
Lsp1109I GCAGC 1 cut(s) 222
MaeI CTAG 1 cut(s) 207
MaeII ACGT 1 cut(s) 310
MaeIII GTNAC 1 cut(s) 541
MalI GATC 2 cut(s) 69, 288
MboI GATC 2 cut(s) 67, 286
MboII GAAGA 1 cut(s) 254
MflI RGATCY 1 cut(s) 67
MluCI AATT 3 cut(s) 5, 30, 91
MlyI GAGTC 1 cut(s) 620
MnlI CCTC 3 cut(s) 300, 366, 632
MseI TTAA 3 cut(s) 117, 354, 480
MspA1I CMGCKG 1 cut(s) 295
MwoI GCNNNNNNNGC 1 cut(s) 494
NdeI CATATG 1 cut(s) 145
NdeII GATC 2 cut(s) 67, 286
NlaIII CATG 3 cut(s) 42, 60, 304
NlaIV GGNNCC 1 cut(s) 377
NspI RCATGY 1 cut(s) 60
PciI ACATGT 1 cut(s) 56
PfeI GAWTC 1 cut(s) 562
PkrI GCNGC 1 cut(s) 212
PleI GAGTC 1 cut(s) 619
PmaCI CACGTG 1 cut(s) 311
PmlI CACGTG 1 cut(s) 311
PpsI GAGTC 1 cut(s) 619
Ppu21I YACGTR 1 cut(s) 311
PscI ACATGT 1 cut(s) 56
PshBI ATTAAT 1 cut(s) 354
PsiI TTATAA 1 cut(s) 521
PspCI CACGTG 1 cut(s) 311
PspN4I GGNNCC 1 cut(s) 377
PspPI GGNCC 2 cut(s) 170, 619
PsuI RGATCY 1 cut(s) 67
PvuII CAGCTG 1 cut(s) 295
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
SaqAI TTAA 3 cut(s) 117, 354, 480
SatI GCNGC 1 cut(s) 211
Sau3AI GATC 2 cut(s) 67, 286
Sau96I GGNCC 2 cut(s) 170, 619
SchI GAGTC 1 cut(s) 620
SetI ASST 6 cut(s) 251, 297, 313, 425, 557, 597
SfcI CTRYAG 1 cut(s) 641
SinI GGWCC 1 cut(s) 619
Sse9I AATT 3 cut(s) 5, 30, 91
SsiI CCGC 2 cut(s) 488, 501
SspI AATATT 1 cut(s) 484
SspMI CTAG 1 cut(s) 207
StyI CCWWGG 1 cut(s) 555
TaiI ACGT 1 cut(s) 313
TasI AATT 3 cut(s) 5, 30, 91
TatI WGTACW 1 cut(s) 297
TfiI GAWTC 1 cut(s) 562
Tru1I TTAA 3 cut(s) 117, 354, 480
Tru9I TTAA 3 cut(s) 117, 354, 480
TscAI CASTG 1 cut(s) 220
TseI GCWGC 1 cut(s) 210
TspDTI ATGAA 4 cut(s) 17, 135, 162, 165
TspGWI ACGGA 1 cut(s) 74
TspRI CASTG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 619
VspI ATTAAT 1 cut(s) 354
XapI RAATTY 1 cut(s) 5
XceI RCATGY 1 cut(s) 60
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.