Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000783

Physical Location & Seq

Genomic Coordinates Reverse (-)

20758130 .. 20759142

Gene Structure 1013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44049

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGATCCAACAACGGGAAATGATACATTTGCAAAGCTATATGGTGCAGCTACTGTCTACTATAATTACAGTGGGACGGCCAAGTGTTTCGATCTTAATGATAAATCAGATCCTCACGACCTCGGAGGATGGGATTGGCAGAATCTTGATTGCCCAGATCTGGTTTGGTGGTGATGAGGGATCTGCTCTTGATCCGTCTTTTGAGGGGGGCGATAGCGACCGACGCGGTGGCCAGATCGTTACTTTTGGAGGTGGTGATGCCTGGTGGTGTTCCGACGAGGGTAGTGCGGTCTTCTATGGTGGAGGCAGTCTGTTTCGGGTTGACCTCTACCCGATGCGTTCTTCTGGATCGACGGTGGCGGTGGCGATTGTCGGTGGCCTTGAACGCAAGACTGGTTTTCAGCCTTCGCCTAAAGGCGGCGACGGTTTCTGGGTGGGATTAGATCCTCTTGGAGATGAGGGCAGTGATCTGCAGAGGGTGAAGGATGGTGATATGGCCCGCTCTGCTTTCGTTGGCGGATGGGGTGGGAATCGGCTTGGTCACGATGGCCTCGTAGGGGCTATGTGGCGGAGTTTTGCAACGGCGAGGCAACTGGGAGGTGGTGGTGGGGTGCCCTTAGTACTTCTGGGGGTGGCCTTCGTAATTGCCATGTGGACTGAGGCTTTGTGGGCTGTTGCTTGCTGGTGGGCCTGGGCTTTCATAATTTTGGACGGGATGGAAGGTGATCTGTCATCTTCCAGTCCTAGTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

250

Amino Acids

26.53

Weight (kDa)

4.56

Isoelectric Point (pI)

47.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000783)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0474951 RchiOBHm_Chr4g0445321 RchiOBHm_Chr5g0016061 RchiOBHm_Chr5g0029401 RchiOBHm_Chr7g0233151
rosa_laevigata	RLG00000002375 RLG00000002823 RLG00000002896 RLG00000003592 RLG00000003843 RLG00000005840 RLG00000008293 RLG00000012102 RLG00000013197 RLG00000016959 RLG00000018233 RLG00000019847 RLG00000023131 RLG00000027840 RLG00000028025 RLG00000028621 RLG00000029122 RLG00000031472 RLG00000031740 RLG00000032291 RLG00000036121
rosa_multiflora	Rmu_sc0004277.1_g000092 Rmu_sc0007019.1_g000008 Rmu_sc0015060.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225560 Rroxscaffold_4G00282260
rosa_rugosa	Rorug03G0193700 Rorug03G0193800
rosa_samantha	Rh1AG034200 Rh1BG030300 Rh1CG033700 Rh2AG674000 Rh2BG312500 Rh2BG685200 Rh2CG648200 Rh2DG699100 Rh3BG279900 Rh4AG080800 Rh4BG423800 Rh4BG433700 Rh4CG088300 Rh4CG399600 Rh4CG438000 Rh4DG429600 Rh5AG205800 Rh5AG219700 Rh5BG204500 Rh5CG226300 Rh5CG242700 Rh5DG207900 Rh5DG208000 Rh6AG244300 Rh6AG386900 Rh6BG098000 Rh6CG263600 Rh6CG356900 Rh6DG255800 Rh6DG405600 Rh7AG318300 Rh7BG360200 Rh7CG189300 Rh7CG335100 Rh7DG370000
rosa_wichuraiana	Rw5G018750 Rw5G020040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	610
AccBSI	CCGCTC	1 cut(s)	501
AccI	GTMKAC	1 cut(s)	56
AccII	CGCG	1 cut(s)	225
AciI	CCGC	7 cut(s)	225, 287, 359, 417, 499, 516, 568
AclWI	GGATC	5 cut(s)	103, 185, 187, 355, 437
AcoI	YGGCCR	2 cut(s)	77, 229
AfaI	GTAC	1 cut(s)	621
AfiI	CCNNNNNNNGG	4 cut(s)	13, 159, 416, 556
AgsI	TTSAA	1 cut(s)	383
AjnI	CCWGG	2 cut(s)	260, 689
AluBI	AGCT	2 cut(s)	36, 49
AluI	AGCT	2 cut(s)	36, 49
AlwI	GGATC	5 cut(s)	103, 185, 187, 355, 437
AlwNI	CAGNNNCTG	1 cut(s)	52
AoxI	GGCC	7 cut(s)	77, 229, 376, 495, 547, 633, 687
ApeKI	GCWGC	1 cut(s)	46
ArsI	GACNNNNNNTTYG	2 cut(s)	646, 678
AspS9I	GGNCC	2 cut(s)	496, 687
AsuHPI	GGTGA	5 cut(s)	182, 266, 490, 500, 734
BaeGI	GKGCMC	1 cut(s)	615
BalI	TGGCCA	1 cut(s)	231
BanI	GGYRCC	1 cut(s)	610
BbsI	GAAGAC	1 cut(s)	283
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	5 cut(s)	122, 479, 513, 539, 709
BceAI	ACGGC	2 cut(s)	92, 597
BcgI	CGANNNNNNTGC	2 cut(s)	266, 300
BciT130I	CCWGG	2 cut(s)	262, 691
BfaI	CTAG	1 cut(s)	744
BfmI	CTRYAG	1 cut(s)	470
BglII	AGATCT	1 cut(s)	156
BisI	GCNGC	2 cut(s)	47, 418
BlsI	GCNGC	2 cut(s)	48, 419
BmcAI	AGTACT	1 cut(s)	621
Bme1390I	CCNGG	2 cut(s)	262, 691
BmgT120I	GGNCC	2 cut(s)	496, 687
BmiI	GGNNCC	1 cut(s)	612
BmrFI	CCNGG	2 cut(s)	262, 691
BmrI	ACTGGG	1 cut(s)	602
BmsI	GCATC	2 cut(s)	247, 324
BmuI	ACTGGG	1 cut(s)	602
BpiI	GAAGAC	1 cut(s)	283
BsaJI	CCNNGG	2 cut(s)	120, 690
Bsc4I	CCNNNNNNNGG	4 cut(s)	13, 159, 416, 556
Bse1I	ACTGG	3 cut(s)	397, 597, 738
BseBI	CCWGG	2 cut(s)	262, 691
BseDI	CCNNGG	2 cut(s)	120, 690
BseGI	GGATG	4 cut(s)	133, 490, 524, 720
BseLI	CCNNNNNNNGG	4 cut(s)	13, 159, 416, 556
BseMII	CTCAG	1 cut(s)	648
BseNI	ACTGG	3 cut(s)	397, 597, 738
BseSI	GKGCMC	1 cut(s)	615
BseXI	GCAGC	1 cut(s)	58
BsgI	GTGCAG	1 cut(s)	65
Bsh1236I	CGCG	1 cut(s)	225
Bsh1285I	CGRYCG	1 cut(s)	220
BshFI	GGCC	7 cut(s)	79, 231, 378, 497, 549, 635, 689
BshNI	GGYRCC	1 cut(s)	610
BsiEI	CGRYCG	1 cut(s)	220
BslFI	GGGAC	1 cut(s)	87
BslI	CCNNNNNNNGG	4 cut(s)	13, 159, 416, 556
BsmFI	GGGAC	1 cut(s)	87
BsnI	GGCC	7 cut(s)	79, 231, 378, 497, 549, 635, 689
Bsp1286I	GDGCHC	1 cut(s)	615
BspACI	CCGC	7 cut(s)	225, 287, 359, 417, 499, 516, 568
BspANI	GGCC	7 cut(s)	79, 231, 378, 497, 549, 635, 689
BspCNI	CTCAG	1 cut(s)	649
BspFNI	CGCG	1 cut(s)	225
BspLI	GGNNCC	1 cut(s)	612
BspMAI	CTGCAG	1 cut(s)	474
BspPI	GGATC	5 cut(s)	103, 185, 187, 355, 437
BspT107I	GGYRCC	1 cut(s)	610
BsrBI	CCGCTC	1 cut(s)	501
BsrI	ACTGG	3 cut(s)	397, 597, 738
BssECI	CCNNGG	2 cut(s)	120, 690
Bst2UI	CCWGG	2 cut(s)	262, 691
Bst4CI	ACNGT	4 cut(s)	54, 70, 355, 425
BstC8I	GCNNGC	2 cut(s)	499, 679
BstDEI	CTNAG	2 cut(s)	616, 657
BstF5I	GGATG	4 cut(s)	133, 490, 524, 720
BstFNI	CGCG	1 cut(s)	225
BstMCI	CGRYCG	1 cut(s)	220
BstMWI	GCNNNNNNNGC	4 cut(s)	222, 384, 503, 668
BstNI	CCWGG	2 cut(s)	262, 691
BstSCI	CCNGG	2 cut(s)	260, 689
BstSFI	CTRYAG	1 cut(s)	470
BstSLI	GKGCMC	1 cut(s)	615
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	1 cut(s)	58
BstV2I	GAAGAC	1 cut(s)	283
BstX2I	RGATCY	4 cut(s)	108, 156, 179, 442
BstYI	RGATCY	4 cut(s)	108, 156, 179, 442
BsuRI	GGCC	7 cut(s)	79, 231, 378, 497, 549, 635, 689
BtsCI	GGATG	4 cut(s)	133, 490, 524, 720
BtsI	GCAGTG	1 cut(s)	469
BtsIMutI	CAGTG	2 cut(s)	75, 469
Cac8I	GCNNGC	2 cut(s)	499, 679
CaiI	CAGNNNCTG	1 cut(s)	52
Cfr13I	GGNCC	2 cut(s)	496, 687
CseI	GACGC	1 cut(s)	231
Csp6I	GTAC	1 cut(s)	620
CviAII	CATG	1 cut(s)	649
CviQI	GTAC	1 cut(s)	620
DdeI	CTNAG	2 cut(s)	616, 657
EaeI	YGGCCR	2 cut(s)	77, 229
EciI	GGCGGA	2 cut(s)	531, 583
EcoRII	CCWGG	2 cut(s)	260, 689
FaeI	CATG	1 cut(s)	652
FaiI	YATR	8 cut(s)	39, 41, 62, 297, 494, 563, 650, 701
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	1 cut(s)	648
FauI	CCCGC	1 cut(s)	506
FblI	GTMKAC	1 cut(s)	56
Fnu4HI	GCNGC	2 cut(s)	47, 418
FokI	GGATG	4 cut(s)	140, 497, 531, 727
Fsp4HI	GCNGC	2 cut(s)	47, 418
FspBI	CTAG	1 cut(s)	744
GluI	GCNGC	2 cut(s)	47, 418
HaeIII	GGCC	7 cut(s)	79, 231, 378, 497, 549, 635, 689
HgaI	GACGC	1 cut(s)	231
Hin1II	CATG	1 cut(s)	652
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HinfI	GANTC	2 cut(s)	141, 529
HphI	GGTGA	5 cut(s)	182, 266, 490, 500, 734
Hpy166II	GTNNAC	3 cut(s)	57, 322, 654
Hpy188I	TCNGA	3 cut(s)	108, 124, 274
Hpy188III	TCNNGA	5 cut(s)	115, 145, 188, 345, 542
Hpy8I	GTNNAC	3 cut(s)	57, 322, 654
Hpy99I	CGWCG	4 cut(s)	225, 278, 355, 425
HpyAV	CCTTC	4 cut(s)	414, 475, 646, 713
HpyCH4III	ACNGT	4 cut(s)	54, 70, 355, 425
HpyCH4V	TGCA	4 cut(s)	31, 46, 472, 578
HpyF10VI	GCNNNNNNNGC	4 cut(s)	222, 384, 503, 668
HpyF3I	CTNAG	2 cut(s)	616, 657
Hsp92II	CATG	1 cut(s)	652
Lsp1109I	GCAGC	1 cut(s)	58
LweI	GCATC	2 cut(s)	247, 324
MaeI	CTAG	1 cut(s)	744
MaeIII	GTNAC	2 cut(s)	238, 539
MbiI	CCGCTC	1 cut(s)	501
MboII	GAAGA	3 cut(s)	283, 333, 726
MflI	RGATCY	4 cut(s)	108, 156, 179, 442
MhlI	GDGCHC	1 cut(s)	615
MlsI	TGGCCA	1 cut(s)	231
MluCI	AATT	3 cut(s)	63, 642, 702
MluNI	TGGCCA	1 cut(s)	231
MmeI	TCCRAC	2 cut(s)	31, 297
Mox20I	TGGCCA	1 cut(s)	231
MscI	TGGCCA	1 cut(s)	231
MseI	TTAA	1 cut(s)	95
Msp20I	TGGCCA	1 cut(s)	231
MspR9I	CCNGG	2 cut(s)	262, 691
MvaI	CCWGG	2 cut(s)	262, 691
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	4 cut(s)	222, 384, 503, 668
NlaIII	CATG	1 cut(s)	652
NlaIV	GGNNCC	1 cut(s)	612
NmuCI	GTSAC	1 cut(s)	539
PcsI	WCGNNNNNNNCGW	1 cut(s)	549
PfeI	GAWTC	2 cut(s)	141, 529
PkrI	GCNGC	2 cut(s)	48, 419
Psp6I	CCWGG	2 cut(s)	260, 689
PspGI	CCWGG	2 cut(s)	260, 689
PspN4I	GGNNCC	1 cut(s)	612
PspPI	GGNCC	2 cut(s)	496, 687
PstI	CTGCAG	1 cut(s)	474
PstNI	CAGNNNCTG	1 cut(s)	52
PsuI	RGATCY	4 cut(s)	108, 156, 179, 442
RsaI	GTAC	1 cut(s)	621
RsaNI	GTAC	1 cut(s)	620
SaqAI	TTAA	1 cut(s)	95
SatI	GCNGC	2 cut(s)	47, 418
Sau96I	GGNCC	2 cut(s)	496, 687
ScaI	AGTACT	1 cut(s)	621
ScrFI	CCNGG	2 cut(s)	262, 691
SduI	GDGCHC	1 cut(s)	615
SetI	ASST	7 cut(s)	38, 51, 122, 253, 327, 601, 724
SfaNI	GCATC	2 cut(s)	247, 324
SfcI	CTRYAG	1 cut(s)	470
Sse9I	AATT	3 cut(s)	63, 642, 702
SsiI	CCGC	7 cut(s)	225, 287, 359, 417, 499, 516, 568
SspMI	CTAG	1 cut(s)	744
StyD4I	CCNGG	2 cut(s)	260, 689
TaaI	ACNGT	4 cut(s)	54, 70, 355, 425
TaqI	TCGA	2 cut(s)	89, 350
TaqII	GACCGA	1 cut(s)	234
TasI	AATT	3 cut(s)	63, 642, 702
TatI	WGTACW	1 cut(s)	619
TauI	GCSGC	1 cut(s)	420
TfiI	GAWTC	2 cut(s)	141, 529
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TscAI	CASTG	2 cut(s)	75, 469
TseFI	GTSAC	1 cut(s)	539
TseI	GCWGC	1 cut(s)	46
Tsp45I	GTSAC	1 cut(s)	539
TspDTI	ATGAA	1 cut(s)	688
TspGWI	ACGGA	1 cut(s)	183
TspRI	CASTG	2 cut(s)	75, 469
XcmI	CCANNNNNNNNNTGG	1 cut(s)	161
XmiI	GTMKAC	1 cut(s)	56
XspI	CTAG	1 cut(s)	744
ZrmI	AGTACT	1 cut(s)	621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.