Rh6BG098000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000783
Physical Location & Seq
Reverse (-)
15334548 .. 15334916
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG098000.1

Sequence Viewer

Length: 369 bp
ATGGTCCTCCCTTCGTTTGTTTGGTTGGTTCACAGGTTGAGGTGGCGGGGGTTCTCTCCGACGTGCCCATCTGTTTTGTCCTTGCGGTTTCTTCTAGGTCCAATGGTTGTGCTGGATGCTAGACATTGGTTGTTCCTGGAGTCGTCCCGATTAGGAAACAGTCTGGTGGTGGATGGATTTGATTGTGGAACTGACTGTGGTCGTCGAGGTTGGTATGTTGGCAAGACCCGATTTCAGGTGTCTGAGGCGGCTTTGGAGCAAGGAGCGATGTTGGCGGATCGTGTTGAGGTTCCGCCAATAGTGCTTGTAAAGCTTCGGCGCTGGGCATGGGATGCACTTGATAGAGATACTAGCGGCGGTGTTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.73

Weight (kDa)

9.09

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 46, 85, 248, 275, 293, 354, 357
AclWI GGATC 1 cut(s) 285
AfiI CCNNNNNNNGG 1 cut(s) 235
AjiI CACGTC 1 cut(s) 63
AjnI CCWGG 1 cut(s) 135
AluBI AGCT 1 cut(s) 313
AluI AGCT 1 cut(s) 313
AlwI GGATC 1 cut(s) 285
AspLEI GCGC 1 cut(s) 321
AspS9I GGNCC 2 cut(s) 4, 98
AvaII GGWCC 2 cut(s) 4, 98
BaeGI GKGCMC 1 cut(s) 68
BccI CCATC 2 cut(s) 76, 167
BciT130I CCWGG 1 cut(s) 137
BfaI CTAG 3 cut(s) 95, 120, 351
BfoI RGCGCY 1 cut(s) 322
BisI GCNGC 2 cut(s) 249, 355
BlsI GCNGC 2 cut(s) 250, 356
Bme1390I CCNGG 1 cut(s) 137
Bme18I GGWCC 2 cut(s) 4, 98
BmgBI CACGTC 1 cut(s) 63
BmgT120I GGNCC 2 cut(s) 4, 98
BmiI GGNNCC 1 cut(s) 291
BmrFI CCNGG 1 cut(s) 137
BmsI GCATC 2 cut(s) 106, 322
BoxI GACNNNNGTC 1 cut(s) 198
BpmI CTGGAG 1 cut(s) 158
Bsc4I CCNNNNNNNGG 1 cut(s) 235
BseBI CCWGG 1 cut(s) 137
BseGI GGATG 3 cut(s) 121, 178, 337
BseLI CCNNNNNNNGG 1 cut(s) 235
BseMII CTCAG 1 cut(s) 234
BseSI GKGCMC 1 cut(s) 68
BseYI CCCAGC 1 cut(s) 321
BslFI GGGAC 1 cut(s) 130
BslI CCNNNNNNNGG 1 cut(s) 235
BsmFI GGGAC 1 cut(s) 130
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 1 cut(s) 277
BspACI CCGC 7 cut(s) 46, 85, 248, 275, 293, 354, 357
BspCNI CTCAG 1 cut(s) 235
BspLI GGNNCC 1 cut(s) 291
BspPI GGATC 1 cut(s) 285
BssMI GATC 1 cut(s) 277
Bst2UI CCWGG 1 cut(s) 137
Bst4CI ACNGT 2 cut(s) 161, 197
BstAPI GCANNNNNTGC 1 cut(s) 332
BstDEI CTNAG 1 cut(s) 243
BstF5I GGATG 3 cut(s) 121, 178, 337
BstH2I RGCGCY 1 cut(s) 322
BstHHI GCGC 1 cut(s) 321
BstKTI GATC 1 cut(s) 280
BstMBI GATC 1 cut(s) 277
BstMWI GCNNNNNNNGC 5 cut(s) 272, 301, 310, 332, 363
BstNI CCWGG 1 cut(s) 137
BstPAI GACNNNNGTC 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 135
BstSLI GKGCMC 1 cut(s) 68
BtgZI GCGATG 1 cut(s) 281
BtrI CACGTC 1 cut(s) 63
BtsCI GGATG 3 cut(s) 121, 178, 337
CfoI GCGC 1 cut(s) 321
Cfr13I GGNCC 2 cut(s) 4, 98
CviAII CATG 1 cut(s) 327
CviJI RGCY 3 cut(s) 251, 313, 366
CviKI_1 RGCY 3 cut(s) 251, 313, 366
DdeI CTNAG 1 cut(s) 243
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
EciI GGCGGA 2 cut(s) 282, 290
Eco47I GGWCC 2 cut(s) 4, 98
EcoRII CCWGG 1 cut(s) 135
FaeI CATG 1 cut(s) 330
FaiI YATR 2 cut(s) 216, 328
FaqI GGGAC 1 cut(s) 130
FatI CATG 1 cut(s) 326
FauI CCCGC 1 cut(s) 39
Fnu4HI GCNGC 2 cut(s) 249, 355
FokI GGATG 3 cut(s) 128, 185, 344
Fsp4HI GCNGC 2 cut(s) 249, 355
FspBI CTAG 3 cut(s) 95, 120, 351
GlaI GCGC 1 cut(s) 320
GluI GCNGC 2 cut(s) 249, 355
GsaI CCCAGC 1 cut(s) 325
GsuI CTGGAG 1 cut(s) 158
HaeII RGCGCY 1 cut(s) 322
HhaI GCGC 1 cut(s) 321
Hin1II CATG 1 cut(s) 330
Hin6I GCGC 1 cut(s) 319
HinP1I GCGC 1 cut(s) 319
HindIII AAGCTT 1 cut(s) 311
HinfI GANTC 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 2 cut(s) 60, 244
Hpy188III TCNNGA 1 cut(s) 147
Hpy8I GTNNAC 1 cut(s) 31
Hpy99I CGWCG 2 cut(s) 64, 207
HpyAV CCTTC 1 cut(s) 21
HpyCH4III ACNGT 2 cut(s) 161, 197
HpyCH4IV ACGT 1 cut(s) 62
HpyCH4V TGCA 1 cut(s) 335
HpyF10VI GCNNNNNNNGC 5 cut(s) 272, 301, 310, 332, 363
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 1 cut(s) 62
Hsp92II CATG 1 cut(s) 330
HspAI GCGC 1 cut(s) 319
Kzo9I GATC 1 cut(s) 277
LmnI GCTCC 2 cut(s) 256, 263
LpnPI CCDG 7 cut(s) 19, 98, 122, 149, 149, 221, 307
LweI GCATC 2 cut(s) 106, 322
MaeI CTAG 3 cut(s) 95, 120, 351
MaeII ACGT 1 cut(s) 62
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MboII GAAGA 1 cut(s) 83
MhlI GDGCHC 1 cut(s) 68
MlyI GAGTC 1 cut(s) 149
MmeI TCCRAC 1 cut(s) 83
MnlI CCTC 5 cut(s) 17, 33, 200, 238, 280
MspR9I CCNGG 1 cut(s) 137
MvaI CCWGG 1 cut(s) 137
MwoI GCNNNNNNNGC 5 cut(s) 272, 301, 310, 332, 363
NdeII GATC 1 cut(s) 277
NlaIII CATG 1 cut(s) 330
NlaIV GGNNCC 1 cut(s) 291
PfoI TCCNGGA 1 cut(s) 135
PkrI GCNGC 2 cut(s) 250, 356
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
PshAI GACNNNNGTC 1 cut(s) 198
Psp6I CCWGG 1 cut(s) 135
PspFI CCCAGC 1 cut(s) 321
PspGI CCWGG 1 cut(s) 135
PspN4I GGNNCC 1 cut(s) 291
PspPI GGNCC 2 cut(s) 4, 98
SatI GCNGC 2 cut(s) 249, 355
Sau3AI GATC 1 cut(s) 277
Sau96I GGNCC 2 cut(s) 4, 98
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 1 cut(s) 137
SduI GDGCHC 1 cut(s) 68
SetI ASST 8 cut(s) 38, 44, 65, 100, 211, 240, 291, 315
SfaNI GCATC 2 cut(s) 106, 322
SinI GGWCC 2 cut(s) 4, 98
SsiI CCGC 7 cut(s) 46, 85, 248, 275, 293, 354, 357
SspMI CTAG 3 cut(s) 95, 120, 351
StyD4I CCNGG 1 cut(s) 135
TaaI ACNGT 2 cut(s) 161, 197
TaiI ACGT 1 cut(s) 65
TaqI TCGA 1 cut(s) 205
TauI GCSGC 2 cut(s) 251, 357
VpaK11BI GGWCC 2 cut(s) 4, 98
XspI CTAG 3 cut(s) 95, 120, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.