Rh2DG699100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000783
Physical Location & Seq
Reverse (-)
91427276 .. 91427914
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG699100.1

Sequence Viewer

Length: 639 bp
ATGGCTTTGTCTCGAGAGAGAGAGAAATATCGTCGTTTCCTCTCTTCGGCGAGCGACAGCGACAAACCTTCTCGCTTACTTCTCTATTATGGTGGCGGCGATAAATCTCTTTGTCTGCCCCTATCTTCAGTTAGGGGAGGATGTTCTGTTGATGTTGGTGGGATTGGGATTGGAATCATTATCGATCAGATCTGGTTTGGTGGTCCTGGTGATGATGGATCTTCTCTTGATCAATCGATTGATAGTGGTGGTAGCGACCGACGCGGCGGCCAGATTGCTTCTGTTGGAGGTGGTAGGGATTGGTGGCGGGGCTGTGTGCATCCGAATGAAGAATCTAGGCGAGCTTCTGGCTTCGTCTTATTCTCATTTTTTTTCGACGATGGTAGTGGTGCAGATTTCGGGGCAAGTGCAGTGGGCTGCCTTTGGTTCATGACTGCGGAGGATCTGATCTTCTATGGATGGGTTGGTACTTTGTCCGGAGGCGGCGAAGGCTTCTGGTTGAAATCTAACCCCCTTGAAAATAGGGTAGAAGGTGGAGGTGCAGCGATGCTACTAGCTGTACAGGGATGCCGGCGAAGGTTCTGGGGTGGAAGATCGGAGATCTATGGTGACGGAGGTCAACGGCGGCTTACGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

22.69

Weight (kDa)

5.5

Isoelectric Point (pI)

47.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 264
AccIII TCCGGA 1 cut(s) 476
AciI CCGC 7 cut(s) 96, 264, 267, 307, 437, 483, 625
AclWI GGATC 2 cut(s) 226, 450
AcoI YGGCCR 1 cut(s) 268
AcuI CTGAAG 1 cut(s) 111
AfaI GTAC 2 cut(s) 469, 561
AfiI CCNNNNNNNGG 1 cut(s) 46
AgsI TTSAA 2 cut(s) 502, 518
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 2 cut(s) 344, 557
AluI AGCT 2 cut(s) 344, 557
Alw26I GTCTC 1 cut(s) 15
AlwI GGATC 2 cut(s) 226, 450
Ama87I CYCGRG 1 cut(s) 12
Aor13HI TCCGGA 1 cut(s) 476
AoxI GGCC 1 cut(s) 268
ApeKI GCWGC 2 cut(s) 417, 542
AspS9I GGNCC 1 cut(s) 203
AsuHPI GGTGA 2 cut(s) 221, 620
AvaI CYCGRG 1 cut(s) 12
AvaII GGWCC 1 cut(s) 203
BbvI GCAGC 2 cut(s) 404, 554
BccI CCATC 3 cut(s) 209, 374, 453
BciT130I CCWGG 1 cut(s) 207
BclI TGATCA 1 cut(s) 229
BcoDI GTCTC 1 cut(s) 15
BfaI CTAG 2 cut(s) 336, 554
BglII AGATCT 2 cut(s) 189, 600
BisI GCNGC 7 cut(s) 97, 265, 268, 418, 484, 543, 626
BlsI GCNGC 7 cut(s) 98, 266, 269, 419, 485, 544, 627
Bme1390I CCNGG 1 cut(s) 207
Bme18I GGWCC 1 cut(s) 203
BmeT110I CYCGRG 1 cut(s) 12
BmgT120I GGNCC 1 cut(s) 203
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 3 cut(s) 328, 537, 557
BoxI GACNNNNGTC 1 cut(s) 615
Bsa29I ATCGAT 2 cut(s) 183, 236
BsaBI GATNNNNATC 1 cut(s) 173
BsaWI WCCGGW 1 cut(s) 476
Bsc4I CCNNNNNNNGG 1 cut(s) 46
Bse118I RCCGGY 1 cut(s) 570
Bse8I GATNNNNATC 1 cut(s) 173
BseAI TCCGGA 1 cut(s) 476
BseBI CCWGG 1 cut(s) 207
BseCI ATCGAT 2 cut(s) 183, 236
BseGI GGATG 4 cut(s) 146, 319, 464, 572
BseJI GATNNNNATC 1 cut(s) 173
BseLI CCNNNNNNNGG 1 cut(s) 46
BseXI GCAGC 2 cut(s) 404, 554
BsgI GTGCAG 3 cut(s) 411, 429, 561
Bsh1236I CGCG 1 cut(s) 264
Bsh1285I CGRYCG 1 cut(s) 259
BshFI GGCC 1 cut(s) 270
BshVI ATCGAT 2 cut(s) 183, 236
BsiEI CGRYCG 1 cut(s) 259
BsiHKCI CYCGRG 1 cut(s) 12
BsiSI CCGG 2 cut(s) 477, 571
BslI CCNNNNNNNGG 1 cut(s) 46
BsmAI GTCTC 1 cut(s) 15
BsnI GGCC 1 cut(s) 270
BsoBI CYCGRG 1 cut(s) 12
Bsp13I TCCGGA 1 cut(s) 476
Bsp1407I TGTACA 1 cut(s) 559
Bsp143I GATC 9 cut(s) 184, 189, 218, 229, 442, 447, 593, 600, 633
BspACI CCGC 7 cut(s) 96, 264, 267, 307, 437, 483, 625
BspANI GGCC 1 cut(s) 270
BspDI ATCGAT 2 cut(s) 183, 236
BspEI TCCGGA 1 cut(s) 476
BspFNI CGCG 1 cut(s) 264
BspHI TCATGA 1 cut(s) 429
BspPI GGATC 2 cut(s) 226, 450
BsrFI RCCGGY 1 cut(s) 570
BsrGI TGTACA 1 cut(s) 559
BssAI RCCGGY 1 cut(s) 570
BssMI GATC 9 cut(s) 184, 189, 218, 229, 442, 447, 593, 600, 633
Bst2UI CCWGG 1 cut(s) 207
Bst6I CTCTTC 1 cut(s) 49
BstAUI TGTACA 1 cut(s) 559
BstC8I GCNNGC 3 cut(s) 52, 342, 572
BstF5I GGATG 4 cut(s) 146, 319, 464, 572
BstFNI CGCG 1 cut(s) 264
BstKTI GATC 9 cut(s) 187, 192, 221, 232, 445, 450, 596, 603, 636
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 9 cut(s) 184, 189, 218, 229, 442, 447, 593, 600, 633
BstMCI CGRYCG 1 cut(s) 259
BstMWI GCNNNNNNNGC 2 cut(s) 261, 489
BstNI CCWGG 1 cut(s) 207
BstPAI GACNNNNGTC 1 cut(s) 615
BstSCI CCNGG 1 cut(s) 205
BstUI CGCG 1 cut(s) 264
BstV1I GCAGC 2 cut(s) 404, 554
BstX2I RGATCY 4 cut(s) 189, 218, 442, 600
BstYI RGATCY 4 cut(s) 189, 218, 442, 600
Bsu15I ATCGAT 2 cut(s) 183, 236
BsuRI GGCC 1 cut(s) 270
BsuTUI ATCGAT 2 cut(s) 183, 236
BtgZI GCGATG 1 cut(s) 560
BtsCI GGATG 4 cut(s) 146, 319, 464, 572
BtsI GCAGTG 1 cut(s) 417
BtsIMutI CAGTG 1 cut(s) 417
Cac8I GCNNGC 3 cut(s) 52, 342, 572
CciI TCATGA 1 cut(s) 429
Cfr10I RCCGGY 1 cut(s) 570
Cfr13I GGNCC 1 cut(s) 203
ClaI ATCGAT 2 cut(s) 183, 236
CseI GACGC 1 cut(s) 270
Csp6I GTAC 2 cut(s) 468, 560
CspCI CAANNNNNGTGG 2 cut(s) 393, 428
CviAII CATG 1 cut(s) 430
CviJI RGCY 9 cut(s) 5, 270, 312, 344, 351, 417, 492, 557, 628
CviKI_1 RGCY 9 cut(s) 5, 270, 312, 344, 351, 417, 492, 557, 628
CviQI GTAC 2 cut(s) 468, 560
DpnI GATC 9 cut(s) 186, 191, 220, 231, 444, 449, 595, 602, 635
DpnII GATC 9 cut(s) 184, 189, 218, 229, 442, 447, 593, 600, 633
EaeI YGGCCR 1 cut(s) 268
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
Eco47I GGWCC 1 cut(s) 203
Eco57I CTGAAG 1 cut(s) 111
Eco88I CYCGRG 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 205
FaeI CATG 1 cut(s) 433
FaiI YATR 4 cut(s) 90, 431, 456, 606
FatI CATG 1 cut(s) 429
FauI CCCGC 1 cut(s) 300
FbaI TGATCA 1 cut(s) 229
Fnu4HI GCNGC 7 cut(s) 97, 265, 268, 418, 484, 543, 626
FokI GGATG 4 cut(s) 153, 306, 471, 579
Fsp4HI GCNGC 7 cut(s) 97, 265, 268, 418, 484, 543, 626
FspBI CTAG 2 cut(s) 336, 554
GluI GCNGC 7 cut(s) 97, 265, 268, 418, 484, 543, 626
HaeIII GGCC 1 cut(s) 270
HapII CCGG 2 cut(s) 477, 571
HgaI GACGC 1 cut(s) 270
Hin1II CATG 1 cut(s) 433
HincII GTYRAC 1 cut(s) 620
HindII GTYRAC 1 cut(s) 620
HinfI GANTC 2 cut(s) 174, 332
HpaII CCGG 2 cut(s) 477, 571
HphI GGTGA 2 cut(s) 221, 620
Hpy166II GTNNAC 1 cut(s) 620
Hpy188I TCNGA 5 cut(s) 189, 324, 447, 598, 638
Hpy188III TCNNGA 5 cut(s) 12, 14, 227, 430, 477
Hpy8I GTNNAC 1 cut(s) 620
Hpy99I CGWCG 3 cut(s) 36, 264, 380
HpyAV CCTTC 4 cut(s) 78, 482, 524, 570
HpyCH4V TGCA 4 cut(s) 319, 392, 410, 542
HpyF10VI GCNNNNNNNGC 2 cut(s) 261, 489
Hsp92II CATG 1 cut(s) 433
Kpn2I TCCGGA 1 cut(s) 476
KroI GCCGGC 1 cut(s) 570
KroNI GCCGGC 1 cut(s) 572
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 9 cut(s) 184, 189, 218, 229, 442, 447, 593, 600, 633
Lsp1109I GCAGC 2 cut(s) 404, 554
LweI GCATC 3 cut(s) 328, 537, 557
MaeI CTAG 2 cut(s) 336, 554
MaeIII GTNAC 1 cut(s) 608
MalI GATC 9 cut(s) 186, 191, 220, 231, 444, 449, 595, 602, 635
MboI GATC 9 cut(s) 184, 189, 218, 229, 442, 447, 593, 600, 633
MboII GAAGA 6 cut(s) 36, 117, 213, 341, 442, 603
MflI RGATCY 4 cut(s) 189, 218, 442, 600
MmeI TCCRAC 1 cut(s) 265
MnlI CCTC 7 cut(s) 50, 131, 281, 433, 473, 530, 608
MroI TCCGGA 1 cut(s) 476
MroNI GCCGGC 1 cut(s) 570
MslI CAYNNNNRTG 1 cut(s) 324
MspI CCGG 2 cut(s) 477, 571
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
MvnI CGCG 1 cut(s) 264
MwoI GCNNNNNNNGC 2 cut(s) 261, 489
NaeI GCCGGC 1 cut(s) 572
NdeII GATC 9 cut(s) 184, 189, 218, 229, 442, 447, 593, 600, 633
NgoMIV GCCGGC 1 cut(s) 570
NlaIII CATG 1 cut(s) 433
NmuCI GTSAC 1 cut(s) 608
PaeR7I CTCGAG 1 cut(s) 12
PagI TCATGA 1 cut(s) 429
PdiI GCCGGC 1 cut(s) 572
PfeI GAWTC 2 cut(s) 174, 332
PkrI GCNGC 7 cut(s) 98, 266, 269, 419, 485, 544, 627
PshAI GACNNNNGTC 1 cut(s) 615
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PspPI GGNCC 1 cut(s) 203
PsuI RGATCY 4 cut(s) 189, 218, 442, 600
RsaI GTAC 2 cut(s) 469, 561
RsaNI GTAC 2 cut(s) 468, 560
RseI CAYNNNNRTG 1 cut(s) 324
SatI GCNGC 7 cut(s) 97, 265, 268, 418, 484, 543, 626
Sau3AI GATC 9 cut(s) 184, 189, 218, 229, 442, 447, 593, 600, 633
Sau96I GGNCC 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 207
SetI ASST 8 cut(s) 70, 292, 346, 535, 541, 559, 581, 619
SfaNI GCATC 3 cut(s) 328, 537, 557
Sfr274I CTCGAG 1 cut(s) 12
SinI GGWCC 1 cut(s) 203
SlaI CTCGAG 1 cut(s) 12
SmiMI CAYNNNNRTG 1 cut(s) 324
SmlI CTYRAG 1 cut(s) 12
SmoI CTYRAG 1 cut(s) 12
SsiI CCGC 7 cut(s) 96, 264, 267, 307, 437, 483, 625
SspMI CTAG 2 cut(s) 336, 554
StyD4I CCNGG 1 cut(s) 205
TaqI TCGA 4 cut(s) 13, 183, 236, 375
TaqII GACCGA 1 cut(s) 273
TatI WGTACW 1 cut(s) 559
TauI GCSGC 5 cut(s) 99, 267, 270, 486, 628
TfiI GAWTC 2 cut(s) 174, 332
TscAI CASTG 1 cut(s) 417
TseFI GTSAC 1 cut(s) 608
TseI GCWGC 2 cut(s) 417, 542
Tsp45I GTSAC 1 cut(s) 608
TspDTI ATGAA 2 cut(s) 342, 418
TspGWI ACGGA 1 cut(s) 627
TspRI CASTG 1 cut(s) 417
VpaK11BI GGWCC 1 cut(s) 203
XhoI CTCGAG 1 cut(s) 12
XspI CTAG 2 cut(s) 336, 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.