Rh1AG034200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000783
Physical Location & Seq
Forward (+)
6027734 .. 6028162
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG034200.1

Sequence Viewer

Length: 429 bp
ATGGCCGGCATATCCTCCCTTCTTATGTCCGGCTGGTTTGTGGGCGGCGGTGGTGGGGGTGCCCTCCGGTGTGCCCATCTGACTTTTCTTTGTGGTTTCCTTCGCAGTCTAAGGATCGTGATGGATGTTGGACATTGGCTACTTCCGACGTCATCTTGTTTGGGAGACAGTCTGGTGTCGGATGGATTTGATTGTGGAACCGGTGGAGGTCGGCGGGGTTGGTATGTCGGCAAAACCCGATTTCTGCTATTTGATGCCGCTTCTGAGCGAGGATCGGTGGCAGATCATGCTGAGCCTCCGTCTACTGTGATTCCAGGCTTTTGGCGCTGGGCATGGACTATACTTGAAAGCAATACCGGCGGAGGTTTTGGGTTGGATGACTGGAGATTTGCAGTGACGGAGGTCGACGGCGGCGTCAGACCAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.12

Weight (kDa)

5.53

Isoelectric Point (pI)

51.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 413
AatII GACGTC 1 cut(s) 152
AccB1I GGYRCC 1 cut(s) 59
AccI GTMKAC 2 cut(s) 302, 405
AciI CCGC 6 cut(s) 45, 48, 214, 258, 360, 411
AclWI GGATC 2 cut(s) 122, 280
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 2 cut(s) 149, 414
AgeI ACCGGT 1 cut(s) 200
AgsI TTSAA 1 cut(s) 347
AjnI CCWGG 1 cut(s) 313
Alw26I GTCTC 1 cut(s) 159
AlwI GGATC 2 cut(s) 122, 280
AoxI GGCC 1 cut(s) 3
ArsI GACNNNNNNTTYG 2 cut(s) 371, 403
AsiGI ACCGGT 1 cut(s) 200
AspLEI GCGC 1 cut(s) 327
BaeGI GKGCMC 2 cut(s) 64, 76
BanI GGYRCC 1 cut(s) 59
BccI CCATC 3 cut(s) 84, 115, 176
BceAI ACGGC 1 cut(s) 424
BciT130I CCWGG 1 cut(s) 315
BcoDI GTCTC 1 cut(s) 159
BfoI RGCGCY 1 cut(s) 328
BisI GCNGC 3 cut(s) 46, 258, 412
BlpI GCTNAGC 1 cut(s) 291
BlsI GCNGC 3 cut(s) 47, 259, 413
Bme1390I CCNGG 1 cut(s) 315
BmiI GGNNCC 2 cut(s) 61, 199
BmrFI CCNGG 1 cut(s) 315
BmsI GCATC 1 cut(s) 244
BoxI GACNNNNGTC 1 cut(s) 401
BpmI CTGGAG 1 cut(s) 403
Bpu1102I GCTNAGC 1 cut(s) 291
BsaHI GRCGYC 2 cut(s) 149, 414
BsaWI WCCGGW 2 cut(s) 66, 200
Bse118I RCCGGY 3 cut(s) 5, 200, 356
Bse1I ACTGG 1 cut(s) 386
BseBI CCWGG 1 cut(s) 315
BseGI GGATG 3 cut(s) 130, 187, 382
BseMII CTCAG 2 cut(s) 255, 282
BseNI ACTGG 1 cut(s) 386
BseSI GKGCMC 2 cut(s) 64, 76
BseYI CCCAGC 1 cut(s) 327
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 59
BshTI ACCGGT 1 cut(s) 200
BsiSI CCGG 5 cut(s) 6, 30, 67, 201, 357
BsmAI GTCTC 1 cut(s) 159
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 2 cut(s) 64, 76
Bsp143I GATC 3 cut(s) 114, 272, 283
Bsp1720I GCTNAGC 1 cut(s) 291
BspACI CCGC 6 cut(s) 45, 48, 214, 258, 360, 411
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 256, 283
BspLI GGNNCC 2 cut(s) 61, 199
BspPI GGATC 2 cut(s) 122, 280
BspT107I GGYRCC 1 cut(s) 59
BsrFI RCCGGY 3 cut(s) 5, 200, 356
BsrI ACTGG 1 cut(s) 386
BssAI RCCGGY 3 cut(s) 5, 200, 356
BssMI GATC 3 cut(s) 114, 272, 283
BssNI GRCGYC 2 cut(s) 149, 414
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 2 cut(s) 170, 307
BstACI GRCGYC 2 cut(s) 149, 414
BstAPI GCANNNNNTGC 1 cut(s) 287
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 3 cut(s) 110, 264, 291
BstF5I GGATG 3 cut(s) 130, 187, 382
BstH2I RGCGCY 1 cut(s) 328
BstHHI GCGC 1 cut(s) 327
BstKTI GATC 3 cut(s) 117, 275, 286
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 3 cut(s) 114, 272, 283
BstMWI GCNNNNNNNGC 3 cut(s) 287, 324, 357
BstNI CCWGG 1 cut(s) 315
BstPAI GACNNNNGTC 1 cut(s) 401
BstSCI CCNGG 1 cut(s) 313
BstSLI GKGCMC 2 cut(s) 64, 76
BstXI CCANNNNNNTGG 1 cut(s) 321
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 3 cut(s) 130, 187, 382
BtsI GCAGTG 1 cut(s) 399
BtsIMutI CAGTG 1 cut(s) 399
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 1 cut(s) 327
Cfr10I RCCGGY 3 cut(s) 5, 200, 356
CseI GACGC 1 cut(s) 403
CspAI ACCGGT 1 cut(s) 200
CviAII CATG 2 cut(s) 287, 333
CviJI RGCY 5 cut(s) 5, 33, 139, 295, 318
CviKI_1 RGCY 5 cut(s) 5, 33, 139, 295, 318
DdeI CTNAG 3 cut(s) 110, 264, 291
DpnI GATC 3 cut(s) 116, 274, 285
DpnII GATC 3 cut(s) 114, 272, 283
DrdI GACNNNNNNGTC 1 cut(s) 413
DseDI GACNNNNNNGTC 1 cut(s) 413
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 375
EcoRII CCWGG 1 cut(s) 313
FaeI CATG 2 cut(s) 290, 336
FaiI YATR 6 cut(s) 11, 26, 225, 288, 334, 341
FatI CATG 2 cut(s) 286, 332
FauI CCCGC 1 cut(s) 207
FblI GTMKAC 2 cut(s) 302, 405
Fnu4HI GCNGC 3 cut(s) 46, 258, 412
FokI GGATG 3 cut(s) 137, 194, 389
Fsp4HI GCNGC 3 cut(s) 46, 258, 412
GlaI GCGC 1 cut(s) 326
GluI GCNGC 3 cut(s) 46, 258, 412
GsaI CCCAGC 1 cut(s) 331
GsuI CTGGAG 1 cut(s) 403
HaeII RGCGCY 1 cut(s) 328
HaeIII GGCC 1 cut(s) 5
HapII CCGG 5 cut(s) 6, 30, 67, 201, 357
HgaI GACGC 1 cut(s) 403
HhaI GCGC 1 cut(s) 327
Hin1I GRCGYC 2 cut(s) 149, 414
Hin1II CATG 2 cut(s) 290, 336
Hin6I GCGC 1 cut(s) 325
HinP1I GCGC 1 cut(s) 325
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HinfI GANTC 1 cut(s) 310
HpaII CCGG 5 cut(s) 6, 30, 67, 201, 357
Hpy166II GTNNAC 2 cut(s) 303, 406
Hpy188I TCNGA 5 cut(s) 81, 147, 181, 265, 419
Hpy188III TCNNGA 1 cut(s) 118
Hpy8I GTNNAC 2 cut(s) 303, 406
Hpy99I CGWCG 2 cut(s) 151, 410
HpyAV CCTTC 2 cut(s) 29, 110
HpyCH4III ACNGT 2 cut(s) 170, 307
HpyCH4IV ACGT 1 cut(s) 149
HpyCH4V TGCA 1 cut(s) 392
HpyF10VI GCNNNNNNNGC 3 cut(s) 287, 324, 357
HpyF3I CTNAG 3 cut(s) 110, 264, 291
HpySE526I ACGT 1 cut(s) 149
Hsp92I GRCGYC 2 cut(s) 149, 414
Hsp92II CATG 2 cut(s) 290, 336
HspAI GCGC 1 cut(s) 325
KroI GCCGGC 1 cut(s) 5
KroNI GCCGGC 1 cut(s) 7
Kzo9I GATC 3 cut(s) 114, 272, 283
LweI GCATC 1 cut(s) 244
MaeII ACGT 1 cut(s) 149
MaeIII GTNAC 1 cut(s) 394
MalI GATC 3 cut(s) 116, 274, 285
MboI GATC 3 cut(s) 114, 272, 283
MhlI GDGCHC 2 cut(s) 64, 76
MmeI TCCRAC 4 cut(s) 109, 159, 170, 354
MnlI CCTC 7 cut(s) 25, 74, 200, 263, 306, 356, 394
MroNI GCCGGC 1 cut(s) 5
MspI CCGG 5 cut(s) 6, 30, 67, 201, 357
MspR9I CCNGG 1 cut(s) 315
MvaI CCWGG 1 cut(s) 315
MwoI GCNNNNNNNGC 3 cut(s) 287, 324, 357
NaeI GCCGGC 1 cut(s) 7
NdeII GATC 3 cut(s) 114, 272, 283
NgoMIV GCCGGC 1 cut(s) 5
NlaIII CATG 2 cut(s) 290, 336
NlaIV GGNNCC 2 cut(s) 61, 199
NmuCI GTSAC 1 cut(s) 394
PcsI WCGNNNNNNNCGW 1 cut(s) 411
PdiI GCCGGC 1 cut(s) 7
PfeI GAWTC 1 cut(s) 310
PinAI ACCGGT 1 cut(s) 200
PkrI GCNGC 3 cut(s) 47, 259, 413
PshAI GACNNNNGTC 1 cut(s) 401
Psp6I CCWGG 1 cut(s) 313
PspFI CCCAGC 1 cut(s) 327
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 2 cut(s) 61, 199
SalI GTCGAC 1 cut(s) 404
SatI GCNGC 3 cut(s) 46, 258, 412
Sau3AI GATC 3 cut(s) 114, 272, 283
ScrFI CCNGG 1 cut(s) 315
SduI GDGCHC 2 cut(s) 64, 76
SetI ASST 4 cut(s) 152, 211, 367, 405
SfaNI GCATC 1 cut(s) 244
SsiI CCGC 6 cut(s) 45, 48, 214, 258, 360, 411
StyD4I CCNGG 1 cut(s) 313
TaaI ACNGT 2 cut(s) 170, 307
TaiI ACGT 1 cut(s) 152
TaqI TCGA 1 cut(s) 405
TauI GCSGC 3 cut(s) 48, 260, 414
TfiI GAWTC 1 cut(s) 310
TscAI CASTG 1 cut(s) 399
TseFI GTSAC 1 cut(s) 394
Tsp45I GTSAC 1 cut(s) 394
TspGWI ACGGA 2 cut(s) 288, 413
TspRI CASTG 1 cut(s) 399
XmiI GTMKAC 2 cut(s) 302, 405
ZraI GACGTC 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.