RchiOBHm_Chr5g0029401

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000783
Physical Location & Seq
Reverse (-)
23038430 .. 23039278
849 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30879

Sequence Viewer

Length: 246 bp
ATGGTTGCTGATTTGGATTTTATATATGGAGAAACTTTTAGTTTTAGGGTGAAGAGAACGGGGAAAATGAAAGAGAGGCGGAACTGGAAAGGATGGAAAAAGAGAACAAATCGTAGTCCAAGGAACTTATTCCTTTGTAGAAATGGATGGTATGGGAAACACTGTAGCACGAGGGAGTGCGAGAAGAGTCAATCTTTTCTGGCTTCTTTTGCAACTTCCAACCTATCCGGTGATATCTTAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

9.54

Weight (kDa)

10.18

Isoelectric Point (pI)

49.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 79
Asp700I GAANNNNTTC 1 cut(s) 128
AsuHPI GGTGA 2 cut(s) 61, 242
BauI CACGAG 1 cut(s) 169
BccI CCATC 2 cut(s) 87, 141
BfmI CTRYAG 1 cut(s) 163
BsaJI CCNNGG 1 cut(s) 119
BsaWI WCCGGW 1 cut(s) 227
Bse1I ACTGG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 119
BseGI GGATG 2 cut(s) 98, 152
BseNI ACTGG 1 cut(s) 89
BsiSI CCGG 1 cut(s) 228
BspACI CCGC 1 cut(s) 79
BsrI ACTGG 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 119
BssSI CACGAG 1 cut(s) 169
BssT1I CCWWGG 1 cut(s) 119
Bst2BI CACGAG 1 cut(s) 169
Bst4CI ACNGT 1 cut(s) 164
Bst6I CTCTTC 2 cut(s) 47, 179
BstDEI CTNAG 1 cut(s) 238
BstF5I GGATG 2 cut(s) 98, 152
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstSFI CTRYAG 1 cut(s) 163
BtsCI GGATG 2 cut(s) 98, 152
BtsIMutI CAGTG 1 cut(s) 160
CviJI RGCY 1 cut(s) 203
CviKI_1 RGCY 1 cut(s) 203
DdeI CTNAG 1 cut(s) 238
Eam1104I CTCTTC 2 cut(s) 47, 179
EarI CTCTTC 2 cut(s) 47, 179
EciI GGCGGA 1 cut(s) 94
Eco130I CCWWGG 1 cut(s) 119
Eco32I GATATC 1 cut(s) 235
EcoRV GATATC 1 cut(s) 235
EcoT14I CCWWGG 1 cut(s) 119
ErhI CCWWGG 1 cut(s) 119
FaiI YATR 4 cut(s) 23, 25, 27, 153
FokI GGATG 2 cut(s) 105, 159
HapII CCGG 1 cut(s) 228
HinfI GANTC 1 cut(s) 187
HpaII CCGG 1 cut(s) 228
HphI GGTGA 2 cut(s) 61, 242
Hpy188I TCNGA 1 cut(s) 245
HpyCH4III ACNGT 1 cut(s) 164
HpyCH4V TGCA 1 cut(s) 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 1 cut(s) 238
LpnPI CCDG 3 cut(s) 70, 185, 241
MboII GAAGA 2 cut(s) 64, 196
MlyI GAGTC 1 cut(s) 196
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 2 cut(s) 69, 165
MroXI GAANNNNTTC 1 cut(s) 128
MspI CCGG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 209
PdmI GAANNNNTTC 1 cut(s) 128
PleI GAGTC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 195
SchI GAGTC 1 cut(s) 196
SetI ASST 1 cut(s) 225
SfcI CTRYAG 1 cut(s) 163
SgeI CNNG 8 cut(s) 72, 97, 132, 181, 183, 193, 212, 240
SsiI CCGC 1 cut(s) 79
StyI CCWWGG 1 cut(s) 119
TaaI ACNGT 1 cut(s) 164
TscAI CASTG 1 cut(s) 167
TspDTI ATGAA 1 cut(s) 83
TspRI CASTG 1 cut(s) 167
XmnI GAANNNNTTC 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.