RLG00000036121

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000783
Physical Location & Seq
Forward (+)
76016893 .. 76018899
2007 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036121

Sequence Viewer

Length: 381 bp
ATGGCAGCGAGTAGCGCGGTAGCCAAATTGATTCCATTGGAGATGGTGGTGCTTGGTGGCGGGGATGTGTGCGTTCGAATTGGTGGGCTGATGGTTTCGTTTTCTTCTCAAATTCCTTGTTTGTATTCCAATGGTGGTAATGGTGAAGATCTCGGGGTAGGTCCAACTGGCTGTCTTTGGCTCATGTTGGGGCAGTATCTAGTCTTCGATGGTGGAGGCGGTAGTTTGCCTCGAGCTGGTCTCTGTTTGACGTGGTCTTCAGTTCCAACAGTGGCTATGGCAATGGCCGATGTAGTGCCATCTCTGAGTGACTGTTGGATCTTGCCAAAGATGAAGGTGCTTGCTGCCATACTCGACCACGCCATCTTCATGCCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

12.96

Weight (kDa)

4.65

Isoelectric Point (pI)

44.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 17
AciI CCGC 3 cut(s) 17, 60, 219
AclWI GGATC 1 cut(s) 326
AcoI YGGCCR 1 cut(s) 285
AcsI RAATTY 1 cut(s) 111
AcuI CTGAAG 1 cut(s) 243
AfiI CCNNNNNNNGG 1 cut(s) 236
AjiI CACGTC 1 cut(s) 252
AluBI AGCT 1 cut(s) 236
AluI AGCT 1 cut(s) 236
Alw26I GTCTC 1 cut(s) 245
AlwI GGATC 1 cut(s) 326
Ama87I CYCGRG 2 cut(s) 152, 231
AoxI GGCC 1 cut(s) 285
ApeKI GCWGC 2 cut(s) 5, 344
ApoI RAATTY 1 cut(s) 111
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 161
AsuHPI GGTGA 1 cut(s) 155
AsuII TTCGAA 1 cut(s) 76
AvaI CYCGRG 2 cut(s) 152, 231
AvaII GGWCC 1 cut(s) 161
BarI GAAGNNNNNNTAC 2 cut(s) 188, 220
BbsI GAAGAC 2 cut(s) 196, 249
BbvI GCAGC 2 cut(s) 17, 331
BccI CCATC 5 cut(s) 37, 85, 203, 307, 371
BcoDI GTCTC 1 cut(s) 245
BfaI CTAG 1 cut(s) 200
BglII AGATCT 1 cut(s) 148
BisI GCNGC 2 cut(s) 6, 345
BlsI GCNGC 2 cut(s) 7, 346
Bme18I GGWCC 1 cut(s) 161
BmeT110I CYCGRG 2 cut(s) 152, 231
BmgBI CACGTC 1 cut(s) 252
BmgT120I GGNCC 1 cut(s) 161
BpiI GAAGAC 2 cut(s) 196, 249
BplI GAGNNNNNCTC 2 cut(s) 225, 257
Bpu14I TTCGAA 1 cut(s) 76
BsaI GGTCTC 1 cut(s) 245
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse1I ACTGG 1 cut(s) 172
Bse3DI GCAATG 1 cut(s) 288
BseGI GGATG 1 cut(s) 70
BseLI CCNNNNNNNGG 1 cut(s) 236
BseMI GCAATG 1 cut(s) 288
BseMII CTCAG 1 cut(s) 296
BseNI ACTGG 1 cut(s) 172
BseXI GCAGC 2 cut(s) 17, 331
Bsh1236I CGCG 1 cut(s) 17
BshFI GGCC 1 cut(s) 287
BsiHKCI CYCGRG 2 cut(s) 152, 231
BslI CCNNNNNNNGG 1 cut(s) 236
BsmAI GTCTC 1 cut(s) 245
BsnI GGCC 1 cut(s) 287
Bso31I GGTCTC 1 cut(s) 245
BsoBI CYCGRG 2 cut(s) 152, 231
Bsp119I TTCGAA 1 cut(s) 76
Bsp143I GATC 2 cut(s) 148, 318
BspACI CCGC 3 cut(s) 17, 60, 219
BspANI GGCC 1 cut(s) 287
BspCNI CTCAG 1 cut(s) 297
BspFNI CGCG 1 cut(s) 17
BspPI GGATC 1 cut(s) 326
BspT104I TTCGAA 1 cut(s) 76
BspTNI GGTCTC 1 cut(s) 245
BsrDI GCAATG 1 cut(s) 288
BsrI ACTGG 1 cut(s) 172
BssMI GATC 2 cut(s) 148, 318
Bst4CI ACNGT 2 cut(s) 271, 314
BstBI TTCGAA 1 cut(s) 76
BstC8I GCNNGC 1 cut(s) 342
BstDEI CTNAG 1 cut(s) 305
BstF5I GGATG 1 cut(s) 70
BstFNI CGCG 1 cut(s) 17
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 2 cut(s) 151, 321
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 2 cut(s) 148, 318
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 2 cut(s) 17, 331
BstV2I GAAGAC 2 cut(s) 196, 249
BstX2I RGATCY 2 cut(s) 148, 318
BstYI RGATCY 2 cut(s) 148, 318
BsuRI GGCC 1 cut(s) 287
BtrI CACGTC 1 cut(s) 252
BtsCI GGATG 1 cut(s) 70
BtsIMutI CAGTG 1 cut(s) 276
Cac8I GCNNGC 1 cut(s) 342
CfoI GCGC 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 161
CviAII CATG 2 cut(s) 184, 370
CviJI RGCY 7 cut(s) 23, 88, 171, 181, 236, 275, 287
CviKI_1 RGCY 7 cut(s) 23, 88, 171, 181, 236, 275, 287
DdeI CTNAG 1 cut(s) 305
DpnI GATC 2 cut(s) 150, 320
DpnII GATC 2 cut(s) 148, 318
EaeI YGGCCR 1 cut(s) 285
Eco31I GGTCTC 1 cut(s) 245
Eco47I GGWCC 1 cut(s) 161
Eco57I CTGAAG 1 cut(s) 243
Eco88I CYCGRG 2 cut(s) 152, 231
FaeI CATG 2 cut(s) 187, 373
FaiI YATR 4 cut(s) 185, 278, 350, 371
FatI CATG 2 cut(s) 183, 369
FauI CCCGC 1 cut(s) 53
Fnu4HI GCNGC 2 cut(s) 6, 345
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 2 cut(s) 6, 345
FspBI CTAG 1 cut(s) 200
GlaI GCGC 1 cut(s) 16
GluI GCNGC 2 cut(s) 6, 345
HaeIII GGCC 1 cut(s) 287
HhaI GCGC 1 cut(s) 17
Hin1II CATG 2 cut(s) 187, 373
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HinfI GANTC 1 cut(s) 31
HphI GGTGA 1 cut(s) 155
Hpy188I TCNGA 1 cut(s) 306
HpyAV CCTTC 1 cut(s) 328
HpyCH4III ACNGT 2 cut(s) 271, 314
HpyCH4IV ACGT 1 cut(s) 251
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 1 cut(s) 305
HpySE526I ACGT 1 cut(s) 251
Hsp92II CATG 2 cut(s) 187, 373
HspAI GCGC 1 cut(s) 15
Kzo9I GATC 2 cut(s) 148, 318
LpnPI CCDG 2 cut(s) 153, 222
Lsp1109I GCAGC 2 cut(s) 17, 331
MaeI CTAG 1 cut(s) 200
MaeII ACGT 1 cut(s) 251
MaeIII GTNAC 1 cut(s) 308
MalI GATC 2 cut(s) 150, 320
MboI GATC 2 cut(s) 148, 318
MboII GAAGA 5 cut(s) 96, 158, 196, 249, 358
MflI RGATCY 2 cut(s) 148, 318
MluCI AATT 3 cut(s) 26, 78, 111
MmeI TCCRAC 3 cut(s) 188, 290, 296
MnlI CCTC 2 cut(s) 209, 240
MslI CAYNNNNRTG 1 cut(s) 368
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 14
NdeII GATC 2 cut(s) 148, 318
NlaIII CATG 2 cut(s) 187, 373
NmuCI GTSAC 1 cut(s) 308
NspV TTCGAA 1 cut(s) 76
PaeR7I CTCGAG 1 cut(s) 231
PfeI GAWTC 1 cut(s) 31
PflFI GACNNNGTC 1 cut(s) 253
PkrI GCNGC 2 cut(s) 7, 346
PspPI GGNCC 1 cut(s) 161
PspXI VCTCGAGB 1 cut(s) 231
PsuI RGATCY 2 cut(s) 148, 318
PsyI GACNNNGTC 1 cut(s) 253
RseI CAYNNNNRTG 1 cut(s) 368
SatI GCNGC 2 cut(s) 6, 345
Sau3AI GATC 2 cut(s) 148, 318
Sau96I GGNCC 1 cut(s) 161
SetI ASST 5 cut(s) 163, 238, 254, 339, 379
Sfr274I CTCGAG 1 cut(s) 231
SfuI TTCGAA 1 cut(s) 76
SinI GGWCC 1 cut(s) 161
SlaI CTCGAG 1 cut(s) 231
SmiMI CAYNNNNRTG 1 cut(s) 368
SmlI CTYRAG 1 cut(s) 231
SmoI CTYRAG 1 cut(s) 231
Sse9I AATT 3 cut(s) 26, 78, 111
SsiI CCGC 3 cut(s) 17, 60, 219
SspMI CTAG 1 cut(s) 200
TaaI ACNGT 2 cut(s) 271, 314
TaiI ACGT 1 cut(s) 254
TaqI TCGA 4 cut(s) 76, 207, 232, 354
TasI AATT 3 cut(s) 26, 78, 111
TfiI GAWTC 1 cut(s) 31
TscAI CASTG 1 cut(s) 276
TseFI GTSAC 1 cut(s) 308
TseI GCWGC 2 cut(s) 5, 344
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 2 cut(s) 347, 358
TspRI CASTG 1 cut(s) 276
Tth111I GACNNNGTC 1 cut(s) 253
VpaK11BI GGWCC 1 cut(s) 161
XapI RAATTY 1 cut(s) 111
XhoI CTCGAG 1 cut(s) 231
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.