Rh3BG279900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000783
Physical Location & Seq
Reverse (-)
27637184 .. 27638725
1542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG279900.1

Sequence Viewer

Length: 249 bp
ATGCATAGGTGGACTTTGGACCAAGAAGCTCTAAAGTTATGGGGCGAGTGTATGCAATTAAATTTCCCGCTGAGCAACTACGTGAATGACGTACATGGAGGAGATGAAGTTGTTTACCAAGAAAGACTATATGCTCCATATCCGAAGAAACATGACAAGATTTGCCAAGACAATGTCCAAATATTGTGGAGTTTCAACGTAATCTCTCTCGGAAAGAATACACGCTTCACCAAGGGATTATCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

9.6

Weight (kDa)

6.81

Isoelectric Point (pI)

41.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 68
AcsI RAATTY 1 cut(s) 61
AfaI GTAC 1 cut(s) 93
AgsI TTSAA 1 cut(s) 196
AluBI AGCT 1 cut(s) 29
AluI AGCT 1 cut(s) 29
ApoI RAATTY 1 cut(s) 61
AspS9I GGNCC 1 cut(s) 19
AsuHPI GGTGA 1 cut(s) 220
AvaII GGWCC 1 cut(s) 19
BlpI GCTNAGC 1 cut(s) 71
Bme18I GGWCC 1 cut(s) 19
BmgT120I GGNCC 1 cut(s) 19
Bpu1102I GCTNAGC 1 cut(s) 71
BsaAI YACGTR 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 231
BsaXI ACNNNNNCTCC 2 cut(s) 93, 123
BseDI CCNNGG 1 cut(s) 231
BseMII CTCAG 1 cut(s) 62
BseRI GAGGAG 1 cut(s) 114
Bsp1720I GCTNAGC 1 cut(s) 71
BspACI CCGC 1 cut(s) 68
BspCNI CTCAG 1 cut(s) 63
BssECI CCNNGG 1 cut(s) 231
BssT1I CCWWGG 1 cut(s) 231
BstBAI YACGTR 1 cut(s) 82
BstDEI CTNAG 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 19
Csp6I GTAC 1 cut(s) 92
CspCI CAANNNNNGTGG 2 cut(s) 167, 202
CviAII CATG 2 cut(s) 95, 152
CviJI RGCY 1 cut(s) 29
CviKI_1 RGCY 1 cut(s) 29
CviQI GTAC 1 cut(s) 92
DdeI CTNAG 1 cut(s) 71
Eco130I CCWWGG 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 19
EcoT14I CCWWGG 1 cut(s) 231
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 231
FaeI CATG 2 cut(s) 98, 155
FaiI YATR 8 cut(s) 6, 40, 53, 96, 130, 132, 139, 153
FatI CATG 2 cut(s) 94, 151
FauI CCCGC 1 cut(s) 75
Hin1II CATG 2 cut(s) 98, 155
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 2 cut(s) 12, 115
Hpy188I TCNGA 2 cut(s) 144, 212
Hpy8I GTNNAC 2 cut(s) 12, 115
HpyCH4IV ACGT 3 cut(s) 81, 90, 198
HpyCH4V TGCA 2 cut(s) 4, 55
HpyF3I CTNAG 1 cut(s) 71
HpySE526I ACGT 3 cut(s) 81, 90, 198
Hsp92II CATG 2 cut(s) 98, 155
LmnI GCTCC 1 cut(s) 139
MaeII ACGT 3 cut(s) 81, 90, 198
MboII GAAGA 1 cut(s) 157
MluCI AATT 2 cut(s) 56, 61
MnlI CCTC 1 cut(s) 92
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 59
MspA1I CMGCKG 1 cut(s) 70
NlaIII CATG 2 cut(s) 98, 155
NsiI ATGCAT 1 cut(s) 6
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PflFI GACNNNGTC 1 cut(s) 173
Ppu21I YACGTR 1 cut(s) 82
PspPI GGNCC 1 cut(s) 19
PsyI GACNNNGTC 1 cut(s) 173
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
SaqAI TTAA 1 cut(s) 59
Sau96I GGNCC 1 cut(s) 19
SetI ASST 5 cut(s) 11, 31, 84, 93, 201
SinI GGWCC 1 cut(s) 19
Sse9I AATT 2 cut(s) 56, 61
SsiI CCGC 1 cut(s) 68
SspI AATATT 1 cut(s) 183
StyI CCWWGG 1 cut(s) 231
TaiI ACGT 3 cut(s) 84, 93, 201
TasI AATT 2 cut(s) 56, 61
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TspDTI ATGAA 1 cut(s) 120
Tth111I GACNNNGTC 1 cut(s) 173
VpaK11BI GGWCC 1 cut(s) 19
XapI RAATTY 1 cut(s) 61
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.