Rh4BG433700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000783
Physical Location & Seq
Reverse (-)
57542875 .. 57545108
2234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG433700.1

Sequence Viewer

Length: 252 bp
ATGTCTCGGGCTGATCTATACCCGAGATGGTCTTTTGGTTCGAAGGTGACTGTGGTGACTGCTAGTGGTTTTGAACGTAAGGCTGGAGGCGGCGGCGACGTCTGGGTGGGATCTATTCCCCTTGGAGAGGAGAGCAGCGTTCTGTTGATGATGATGAATGGTTCAAGGATATCTACGTTGGCTGTAAAAGCAGCTCTTAGACCCACTTATAAGCTACAAAATAATATAAGCAAGGAGCATTTAAATTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

8.98

Weight (kDa)

9.87

Isoelectric Point (pI)

42.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 210
AatII GACGTC 1 cut(s) 102
AciI CCGC 2 cut(s) 90, 93
AclWI GGATC 1 cut(s) 118
AcsI RAATTY 1 cut(s) 244
AcyI GRCGYC 1 cut(s) 99
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 2 cut(s) 74, 165
AluBI AGCT 2 cut(s) 194, 214
AluI AGCT 2 cut(s) 194, 214
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 118
Ama87I CYCGRG 2 cut(s) 6, 22
ApeKI GCWGC 2 cut(s) 135, 191
ApoI RAATTY 1 cut(s) 244
AsuHPI GGTGA 2 cut(s) 58, 67
AsuII TTCGAA 1 cut(s) 41
AvaI CYCGRG 2 cut(s) 6, 22
BbvI GCAGC 2 cut(s) 147, 203
BccI CCATC 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 63
BisI GCNGC 4 cut(s) 91, 94, 136, 192
BlsI GCNGC 4 cut(s) 92, 95, 137, 193
BmeT110I CYCGRG 2 cut(s) 6, 22
BpmI CTGGAG 1 cut(s) 105
Bpu14I TTCGAA 1 cut(s) 41
BsaHI GRCGYC 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 121
Bsc4I CCNNNNNNNGG 1 cut(s) 127
BseDI CCNNGG 1 cut(s) 121
BseLI CCNNNNNNNGG 1 cut(s) 127
BseRI GAGGAG 1 cut(s) 143
BseXI GCAGC 2 cut(s) 147, 203
BsiHKCI CYCGRG 2 cut(s) 6, 22
BslI CCNNNNNNNGG 1 cut(s) 127
BsmAI GTCTC 1 cut(s) 9
BsoBI CYCGRG 2 cut(s) 6, 22
Bsp119I TTCGAA 1 cut(s) 41
Bsp143I GATC 2 cut(s) 13, 110
BspACI CCGC 2 cut(s) 90, 93
BspPI GGATC 1 cut(s) 118
BspT104I TTCGAA 1 cut(s) 41
BssECI CCNNGG 1 cut(s) 121
BssMI GATC 2 cut(s) 13, 110
BssNI GRCGYC 1 cut(s) 99
BssT1I CCWWGG 1 cut(s) 121
Bst4CI ACNGT 1 cut(s) 52
BstACI GRCGYC 1 cut(s) 99
BstBI TTCGAA 1 cut(s) 41
BstDEI CTNAG 1 cut(s) 197
BstENI CCTNNNNNAGG 1 cut(s) 125
BstKTI GATC 2 cut(s) 16, 113
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 2 cut(s) 13, 110
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstV1I GCAGC 2 cut(s) 147, 203
BstX2I RGATCY 1 cut(s) 110
BstYI RGATCY 1 cut(s) 110
CviJI RGCY 5 cut(s) 11, 83, 182, 194, 214
CviKI_1 RGCY 5 cut(s) 11, 83, 182, 194, 214
DdeI CTNAG 1 cut(s) 197
DpnI GATC 2 cut(s) 15, 112
DpnII GATC 2 cut(s) 13, 110
DraI TTTAAA 1 cut(s) 243
Eco130I CCWWGG 1 cut(s) 121
Eco32I GATATC 1 cut(s) 171
Eco88I CYCGRG 2 cut(s) 6, 22
EcoNI CCTNNNNNAGG 1 cut(s) 125
EcoRV GATATC 1 cut(s) 171
EcoT14I CCWWGG 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 121
FaiI YATR 3 cut(s) 19, 210, 227
FalI AAGNNNNNCTT 2 cut(s) 180, 212
Fnu4HI GCNGC 4 cut(s) 91, 94, 136, 192
Fsp4HI GCNGC 4 cut(s) 91, 94, 136, 192
FspBI CTAG 1 cut(s) 63
GluI GCNGC 4 cut(s) 91, 94, 136, 192
GsuI CTGGAG 1 cut(s) 105
Hin1I GRCGYC 1 cut(s) 99
HphI GGTGA 2 cut(s) 58, 67
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 1 cut(s) 37
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4IV ACGT 3 cut(s) 76, 99, 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
HpyF3I CTNAG 1 cut(s) 197
HpySE526I ACGT 3 cut(s) 76, 99, 176
Hsp92I GRCGYC 1 cut(s) 99
Kzo9I GATC 2 cut(s) 13, 110
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 2 cut(s) 69, 88
Lsp1109I GCAGC 2 cut(s) 147, 203
MaeI CTAG 1 cut(s) 63
MaeII ACGT 3 cut(s) 76, 99, 176
MaeIII GTNAC 2 cut(s) 46, 55
MalI GATC 2 cut(s) 15, 112
MboI GATC 2 cut(s) 13, 110
MflI RGATCY 1 cut(s) 110
MluCI AATT 1 cut(s) 244
MnlI CCTC 2 cut(s) 80, 121
MseI TTAA 1 cut(s) 242
MwoI GCNNNNNNNGC 1 cut(s) 188
NdeII GATC 2 cut(s) 13, 110
NmuCI GTSAC 2 cut(s) 46, 55
NspV TTCGAA 1 cut(s) 41
PkrI GCNGC 4 cut(s) 92, 95, 137, 193
PsiI TTATAA 1 cut(s) 210
PsuI RGATCY 1 cut(s) 110
SaqAI TTAA 1 cut(s) 242
SatI GCNGC 4 cut(s) 91, 94, 136, 192
Sau3AI GATC 2 cut(s) 13, 110
SetI ASST 6 cut(s) 48, 79, 102, 179, 196, 216
SfuI TTCGAA 1 cut(s) 41
SmiI ATTTAAAT 1 cut(s) 243
Sse9I AATT 1 cut(s) 244
SsiI CCGC 2 cut(s) 90, 93
SspMI CTAG 1 cut(s) 63
StyI CCWWGG 1 cut(s) 121
SwaI ATTTAAAT 1 cut(s) 243
TaaI ACNGT 1 cut(s) 52
TaiI ACGT 3 cut(s) 79, 102, 179
TaqI TCGA 1 cut(s) 41
TasI AATT 1 cut(s) 244
TauI GCSGC 2 cut(s) 93, 96
Tru1I TTAA 1 cut(s) 242
Tru9I TTAA 1 cut(s) 242
TseFI GTSAC 2 cut(s) 46, 55
TseI GCWGC 2 cut(s) 135, 191
Tsp45I GTSAC 2 cut(s) 46, 55
TspDTI ATGAA 1 cut(s) 170
XagI CCTNNNNNAGG 1 cut(s) 125
XapI RAATTY 1 cut(s) 244
XspI CTAG 1 cut(s) 63
ZraI GACGTC 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.