Rh4CG438000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000783
Physical Location & Seq
Forward (+)
67602680 .. 67603012
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG438000.1

Sequence Viewer

Length: 333 bp
ATGTCTCAAGCTGACCTCTACCCTAGATGGTCTTTTGGTTCGAAGGTGATTGTGGCGACTGCCAGTGGTTTTGAACGTAATGCTAGCTTTCAGCCTTCATCTGCAGGCGGTGACTGCGTCTGGTTCGGATCTGTTCTCCTTAGAGATGAGGGCAGCGATCTGTTGATGGTGAAGGATGGTGATTTGGCTCGATCTGTTTTCATTGATGATGTTGGCGGTTGGGGTGGGAATCGGCTTGGTCGTGGTGGCCTAGCAGTGGCTCTGTGGCAGAGTTTTGCTGCGACAAGGCTAGTTAGGGGTAGTGGTGGGGCACCCTTCGCAATTGCCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.55

Weight (kDa)

6.11

Isoelectric Point (pI)

41.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 310
AciI CCGC 2 cut(s) 108, 216
AclWI GGATC 1 cut(s) 136
AfiI CCNNNNNNNGG 1 cut(s) 256
AgsI TTSAA 1 cut(s) 74
AluBI AGCT 2 cut(s) 11, 87
AluI AGCT 2 cut(s) 11, 87
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 136
AoxI GGCC 1 cut(s) 247
ApeKI GCWGC 2 cut(s) 153, 278
AsuHPI GGTGA 4 cut(s) 58, 122, 181, 191
AsuII TTCGAA 1 cut(s) 41
AsuNHI GCTAGC 1 cut(s) 83
BaeGI GKGCMC 1 cut(s) 313
BanI GGYRCC 1 cut(s) 310
BbvI GCAGC 2 cut(s) 165, 265
BccI CCATC 3 cut(s) 21, 160, 170
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 4 cut(s) 24, 84, 251, 290
BfmI CTRYAG 1 cut(s) 102
BisI GCNGC 2 cut(s) 154, 279
BlsI GCNGC 2 cut(s) 155, 280
BmiI GGNNCC 1 cut(s) 312
BmtI GCTAGC 1 cut(s) 87
Bpu14I TTCGAA 1 cut(s) 41
Bsc4I CCNNNNNNNGG 1 cut(s) 256
Bse1I ACTGG 1 cut(s) 63
BseGI GGATG 1 cut(s) 181
BseLI CCNNNNNNNGG 1 cut(s) 256
BseNI ACTGG 1 cut(s) 63
BseSI GKGCMC 1 cut(s) 313
BseXI GCAGC 2 cut(s) 165, 265
BshFI GGCC 1 cut(s) 249
BshNI GGYRCC 1 cut(s) 310
BslI CCNNNNNNNGG 1 cut(s) 256
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 1 cut(s) 249
Bsp119I TTCGAA 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 313
Bsp143I GATC 3 cut(s) 128, 157, 191
BspACI CCGC 2 cut(s) 108, 216
BspANI GGCC 1 cut(s) 249
BspLI GGNNCC 1 cut(s) 312
BspMAI CTGCAG 1 cut(s) 106
BspOI GCTAGC 1 cut(s) 87
BspPI GGATC 1 cut(s) 136
BspT104I TTCGAA 1 cut(s) 41
BspT107I GGYRCC 1 cut(s) 310
BsrI ACTGG 1 cut(s) 63
BssMI GATC 3 cut(s) 128, 157, 191
BstBI TTCGAA 1 cut(s) 41
BstC8I GCNNGC 2 cut(s) 85, 106
BstDEI CTNAG 1 cut(s) 140
BstF5I GGATG 1 cut(s) 181
BstKTI GATC 3 cut(s) 131, 160, 194
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 3 cut(s) 128, 157, 191
BstMWI GCNNNNNNNGC 2 cut(s) 114, 317
BstSFI CTRYAG 1 cut(s) 102
BstSLI GKGCMC 1 cut(s) 313
BstV1I GCAGC 2 cut(s) 165, 265
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
BsuRI GGCC 1 cut(s) 249
BtsCI GGATG 1 cut(s) 181
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 2 cut(s) 70, 261
Cac8I GCNNGC 2 cut(s) 85, 106
CseI GACGC 1 cut(s) 106
CviAII CATG 1 cut(s) 328
CviJI RGCY 8 cut(s) 11, 87, 94, 188, 235, 249, 260, 289
CviKI_1 RGCY 8 cut(s) 11, 87, 94, 188, 235, 249, 260, 289
DdeI CTNAG 1 cut(s) 140
DpnI GATC 3 cut(s) 130, 159, 193
DpnII GATC 3 cut(s) 128, 157, 191
FaeI CATG 1 cut(s) 331
FaiI YATR 1 cut(s) 329
FatI CATG 1 cut(s) 327
Fnu4HI GCNGC 2 cut(s) 154, 279
FokI GGATG 1 cut(s) 188
Fsp4HI GCNGC 2 cut(s) 154, 279
FspBI CTAG 4 cut(s) 24, 84, 251, 290
GluI GCNGC 2 cut(s) 154, 279
HaeIII GGCC 1 cut(s) 249
HgaI GACGC 1 cut(s) 106
Hin1II CATG 1 cut(s) 331
HinfI GANTC 1 cut(s) 229
HphI GGTGA 4 cut(s) 58, 122, 181, 191
Hpy188I TCNGA 1 cut(s) 128
HpyAV CCTTC 4 cut(s) 37, 105, 166, 325
HpyCH4IV ACGT 1 cut(s) 76
HpyCH4V TGCA 1 cut(s) 104
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 317
HpyF3I CTNAG 1 cut(s) 140
HpySE526I ACGT 1 cut(s) 76
Hsp92II CATG 1 cut(s) 331
Kzo9I GATC 3 cut(s) 128, 157, 191
LpnPI CCDG 3 cut(s) 76, 90, 106
Lsp1109I GCAGC 2 cut(s) 165, 265
MaeI CTAG 4 cut(s) 24, 84, 251, 290
MaeII ACGT 1 cut(s) 76
MaeIII GTNAC 1 cut(s) 110
MalI GATC 3 cut(s) 130, 159, 193
MboI GATC 3 cut(s) 128, 157, 191
MfeI CAATTG 1 cut(s) 321
MflI RGATCY 1 cut(s) 128
MhlI GDGCHC 1 cut(s) 313
MluCI AATT 1 cut(s) 321
MnlI CCTC 2 cut(s) 26, 142
MunI CAATTG 1 cut(s) 321
MwoI GCNNNNNNNGC 2 cut(s) 114, 317
NdeII GATC 3 cut(s) 128, 157, 191
NheI GCTAGC 1 cut(s) 83
NlaIII CATG 1 cut(s) 331
NlaIV GGNNCC 1 cut(s) 312
NmuCI GTSAC 1 cut(s) 110
NspV TTCGAA 1 cut(s) 41
PcsI WCGNNNNNNNCGW 1 cut(s) 238
PfeI GAWTC 1 cut(s) 229
PflFI GACNNNGTC 1 cut(s) 116
PkrI GCNGC 2 cut(s) 155, 280
PspN4I GGNNCC 1 cut(s) 312
PstI CTGCAG 1 cut(s) 106
PsuI RGATCY 1 cut(s) 128
PsyI GACNNNGTC 1 cut(s) 116
SatI GCNGC 2 cut(s) 154, 279
Sau3AI GATC 3 cut(s) 128, 157, 191
SduI GDGCHC 1 cut(s) 313
SetI ASST 5 cut(s) 13, 18, 48, 79, 89
SfcI CTRYAG 1 cut(s) 102
SfuI TTCGAA 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 6
SmoI CTYRAG 1 cut(s) 6
Sse9I AATT 1 cut(s) 321
SsiI CCGC 2 cut(s) 108, 216
SspMI CTAG 4 cut(s) 24, 84, 251, 290
TaiI ACGT 1 cut(s) 79
TaqI TCGA 2 cut(s) 41, 190
TasI AATT 1 cut(s) 321
TfiI GAWTC 1 cut(s) 229
TscAI CASTG 2 cut(s) 70, 261
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 2 cut(s) 153, 278
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 2 cut(s) 87, 190
TspRI CASTG 2 cut(s) 70, 261
Tth111I GACNNNGTC 1 cut(s) 116
XspI CTAG 4 cut(s) 24, 84, 251, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.