Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000783

Physical Location & Seq

Genomic Coordinates Reverse (-)

26110634 .. 26112640

Gene Structure 2007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G020040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGCAGGGATGTCCTCCCTTCATTTGTCTGGTTGGTTCGTGGGCAGTGGTGGCGGGGGTGTTCTCCGGCGTGCCCATCTGTTTTTTCCTTACAGTTTTATTCTCGGTCCAATGGTCGTGCTGGATGCTGGTCATTGGCTGCTTCCGATGTCGCCCAATGGGGGAGACAATCTGGTGGTGGATGATTTTGATTGTGGAGCTGATGGGGTCGTTGGGGCTGGTAAGACCCGATCTCGGGTGTCGAAGGCGACTCCGGAGCGAGGAGCGGTGGTGACGGATTGTGCTGAGACTCCATCATCAGTGCTTGCAGAGTTCCAGCGCTGGGCATGGGCTGCACTTGGTAGAGGCAACGGTGCCGGTGCTGGCTGGAACTCTGAGATGAGGGAGATCGGCAATGGCATCCGAGCTGATTGGGCTACCTTGTCCTCCTGCTGGGCTGACTGTTGTTGGGCTCCTTGCTTTGGGCTCCCCGAGGTTGGGCCTCATAAGGGTGGAGGTTCTCATCAAGCTCCTGCTCCTGCTCCATTGCTGAAGGAGAGCAAGGTCGTCGACCGATCAATAATGATGGAGAGTGCCAGAAAAGTGTTGCAGGCTAGAATTCAAAGCCAAGCCGGAAAGCCTTTTGACTCCAAACGCTTGAGTCCCAGCGGCCCTGATCCAAACCATCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0007154 GO:0007267 GO:0008150 GO:0009987 GO:0023052 GO:0030154 GO:0032502 GO:0033612 GO:0045165 GO:0045168 GO:0048046 GO:0048869

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

223

Amino Acids

23.52

Weight (kDa)

7.68

Isoelectric Point (pI)

47.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000783)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0474951 RchiOBHm_Chr4g0445321 RchiOBHm_Chr5g0016061 RchiOBHm_Chr5g0029401 RchiOBHm_Chr7g0233151
rosa_laevigata	RLG00000002375 RLG00000002823 RLG00000002896 RLG00000003592 RLG00000003843 RLG00000005840 RLG00000008293 RLG00000012102 RLG00000013197 RLG00000016959 RLG00000018233 RLG00000019847 RLG00000023131 RLG00000027840 RLG00000028025 RLG00000028621 RLG00000029122 RLG00000031472 RLG00000031740 RLG00000032291 RLG00000036121
rosa_multiflora	Rmu_sc0004277.1_g000092 Rmu_sc0007019.1_g000008 Rmu_sc0015060.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225560 Rroxscaffold_4G00282260
rosa_rugosa	Rorug03G0193700 Rorug03G0193800
rosa_samantha	Rh1AG034200 Rh1BG030300 Rh1CG033700 Rh2AG674000 Rh2BG312500 Rh2BG685200 Rh2CG648200 Rh2DG699100 Rh3BG279900 Rh4AG080800 Rh4BG423800 Rh4BG433700 Rh4CG088300 Rh4CG399600 Rh4CG438000 Rh4DG429600 Rh5AG205800 Rh5AG219700 Rh5BG204500 Rh5CG226300 Rh5CG242700 Rh5DG207900 Rh5DG208000 Rh6AG244300 Rh6AG386900 Rh6BG098000 Rh6CG263600 Rh6CG356900 Rh6DG255800 Rh6DG405600 Rh7AG318300 Rh7BG360200 Rh7CG189300 Rh7CG335100 Rh7DG370000
rosa_wichuraiana	Rw5G018750 Rw5G020040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	353
AccBSI	CCGCTC	1 cut(s)	266
AccI	GTMKAC	1 cut(s)	549
AccIII	TCCGGA	1 cut(s)	253
AciI	CCGC	3 cut(s)	54, 266, 648
AclWI	GGATC	1 cut(s)	650
AcsI	RAATTY	1 cut(s)	597
AcuI	CTGAAG	1 cut(s)	551
AfeI	AGCGCT	1 cut(s)	320
AgsI	TTSAA	1 cut(s)	602
AluBI	AGCT	3 cut(s)	200, 407, 509
AluI	AGCT	3 cut(s)	200, 407, 509
Alw26I	GTCTC	2 cut(s)	159, 281
AlwI	GGATC	1 cut(s)	650
Ama87I	CYCGRG	2 cut(s)	234, 470
Aor13HI	TCCGGA	1 cut(s)	253
Aor51HI	AGCGCT	1 cut(s)	320
AoxI	GGCC	2 cut(s)	479, 649
ApeKI	GCWGC	2 cut(s)	139, 332
ApoI	RAATTY	1 cut(s)	597
AspLEI	GCGC	1 cut(s)	321
AspS9I	GGNCC	3 cut(s)	107, 479, 650
AsuHPI	GGTGA	1 cut(s)	283
AvaI	CYCGRG	2 cut(s)	234, 470
AvaII	GGWCC	1 cut(s)	107
BaeGI	GKGCMC	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	353
BanII	GRGCYC	2 cut(s)	454, 468
BbvI	GCAGC	2 cut(s)	126, 319
BccI	CCATC	4 cut(s)	84, 197, 301, 559
BcgI	CGANNNNNNTGC	2 cut(s)	529, 563
BcoDI	GTCTC	2 cut(s)	159, 281
BfaI	CTAG	2 cut(s)	594, 670
BfoI	RGCGCY	1 cut(s)	322
BisI	GCNGC	3 cut(s)	140, 333, 649
BlsI	GCNGC	3 cut(s)	141, 334, 650
Bme18I	GGWCC	1 cut(s)	107
BmeT110I	CYCGRG	2 cut(s)	234, 470
BmgT120I	GGNCC	3 cut(s)	107, 479, 650
BmiI	GGNNCC	3 cut(s)	355, 453, 467
BmsI	GCATC	2 cut(s)	115, 408
BpuEI	CTTGAG	1 cut(s)	658
BsaJI	CCNNGG	1 cut(s)	471
BsaWI	WCCGGW	1 cut(s)	253
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bse118I	RCCGGY	1 cut(s)	356
Bse3DI	GCAATG	2 cut(s)	400, 524
BseAI	TCCGGA	1 cut(s)	253
BseDI	CCNNGG	1 cut(s)	471
BseGI	GGATG	4 cut(s)	15, 130, 187, 399
BseMI	GCAATG	2 cut(s)	400, 524
BseMII	CTCAG	2 cut(s)	276, 366
BseRI	GAGGAG	1 cut(s)	276
BseSI	GKGCMC	1 cut(s)	76
BseXI	GCAGC	2 cut(s)	126, 319
BseYI	CCCAGC	3 cut(s)	321, 432, 644
BsgI	GTGCAG	1 cut(s)	318
Bsh1285I	CGRYCG	1 cut(s)	553
BshFI	GGCC	2 cut(s)	481, 651
BshNI	GGYRCC	1 cut(s)	353
BsiEI	CGRYCG	1 cut(s)	553
BsiHKCI	CYCGRG	2 cut(s)	234, 470
BsiSI	CCGG	4 cut(s)	67, 254, 357, 612
BslFI	GGGAC	1 cut(s)	627
BsmAI	GTCTC	2 cut(s)	159, 281
BsmFI	GGGAC	1 cut(s)	627
BsnI	GGCC	2 cut(s)	481, 651
BsoBI	CYCGRG	2 cut(s)	234, 470
Bsp1286I	GDGCHC	3 cut(s)	76, 454, 468
Bsp13I	TCCGGA	1 cut(s)	253
Bsp143I	GATC	4 cut(s)	230, 387, 554, 655
BspACI	CCGC	3 cut(s)	54, 266, 648
BspANI	GGCC	2 cut(s)	481, 651
BspCNI	CTCAG	2 cut(s)	277, 367
BspEI	TCCGGA	1 cut(s)	253
BspLI	GGNNCC	3 cut(s)	355, 453, 467
BspPI	GGATC	1 cut(s)	650
BspT107I	GGYRCC	1 cut(s)	353
BsrBI	CCGCTC	1 cut(s)	266
BsrDI	GCAATG	2 cut(s)	400, 524
BsrFI	RCCGGY	1 cut(s)	356
BssAI	RCCGGY	1 cut(s)	356
BssECI	CCNNGG	1 cut(s)	471
BssMI	GATC	4 cut(s)	230, 387, 554, 655
Bst4CI	ACNGT	3 cut(s)	95, 353, 443
BstAPI	GCANNNNNTGC	1 cut(s)	332
BstC8I	GCNNGC	4 cut(s)	72, 306, 364, 591
BstDEI	CTNAG	2 cut(s)	285, 375
BstF5I	GGATG	4 cut(s)	15, 130, 187, 399
BstH2I	RGCGCY	1 cut(s)	322
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	4 cut(s)	233, 390, 557, 658
BstMAI	GTCTC	2 cut(s)	159, 281
BstMBI	GATC	4 cut(s)	230, 387, 554, 655
BstMCI	CGRYCG	1 cut(s)	553
BstMWI	GCNNNNNNNGC	3 cut(s)	51, 332, 413
BstSLI	GKGCMC	1 cut(s)	76
BstV1I	GCAGC	2 cut(s)	126, 319
BsuRI	GGCC	2 cut(s)	481, 651
BtsCI	GGATG	4 cut(s)	15, 130, 187, 399
BtsI	GCAGTG	1 cut(s)	52
BtsIMutI	CAGTG	2 cut(s)	52, 306
Cac8I	GCNNGC	4 cut(s)	72, 306, 364, 591
CfoI	GCGC	1 cut(s)	321
Cfr10I	RCCGGY	1 cut(s)	356
Cfr13I	GGNCC	3 cut(s)	107, 479, 650
CviAII	CATG	1 cut(s)	327
DdeI	CTNAG	2 cut(s)	285, 375
DpnI	GATC	4 cut(s)	232, 389, 556, 657
DpnII	GATC	4 cut(s)	230, 387, 554, 655
Eco24I	GRGCYC	2 cut(s)	454, 468
Eco47I	GGWCC	1 cut(s)	107
Eco47III	AGCGCT	1 cut(s)	320
Eco57I	CTGAAG	1 cut(s)	551
Eco88I	CYCGRG	2 cut(s)	234, 470
EcoRI	GAATTC	1 cut(s)	597
EcoT38I	GRGCYC	2 cut(s)	454, 468
FaeI	CATG	1 cut(s)	330
FaiI	YATR	2 cut(s)	328, 486
FaqI	GGGAC	1 cut(s)	627
FatI	CATG	1 cut(s)	326
FauI	CCCGC	1 cut(s)	47
FblI	GTMKAC	1 cut(s)	549
Fnu4HI	GCNGC	3 cut(s)	140, 333, 649
FokI	GGATG	4 cut(s)	22, 137, 194, 386
FriOI	GRGCYC	2 cut(s)	454, 468
Fsp4HI	GCNGC	3 cut(s)	140, 333, 649
FspBI	CTAG	2 cut(s)	594, 670
GlaI	GCGC	1 cut(s)	320
GluI	GCNGC	3 cut(s)	140, 333, 649
GsaI	CCCAGC	3 cut(s)	325, 436, 648
HaeII	RGCGCY	1 cut(s)	322
HaeIII	GGCC	2 cut(s)	481, 651
HapII	CCGG	4 cut(s)	67, 254, 357, 612
HhaI	GCGC	1 cut(s)	321
Hin1II	CATG	1 cut(s)	330
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HinfI	GANTC	4 cut(s)	250, 289, 626, 640
HpaII	CCGG	4 cut(s)	67, 254, 357, 612
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	1 cut(s)	550
Hpy188I	TCNGA	3 cut(s)	147, 376, 404
Hpy188III	TCNNGA	1 cut(s)	254
Hpy8I	GTNNAC	1 cut(s)	550
Hpy99I	CGWCG	1 cut(s)	551
HpyAV	CCTTC	3 cut(s)	29, 238, 526
HpyCH4III	ACNGT	3 cut(s)	95, 353, 443
HpyCH4V	TGCA	3 cut(s)	308, 335, 589
HpyF10VI	GCNNNNNNNGC	3 cut(s)	51, 332, 413
HpyF3I	CTNAG	2 cut(s)	285, 375
Hsp92II	CATG	1 cut(s)	330
HspAI	GCGC	1 cut(s)	319
Kpn2I	TCCGGA	1 cut(s)	253
Kzo9I	GATC	4 cut(s)	230, 387, 554, 655
LmnI	GCTCC	8 cut(s)	197, 256, 263, 457, 471, 514, 520, 526
Lsp1109I	GCAGC	2 cut(s)	126, 319
LweI	GCATC	2 cut(s)	115, 408
MaeI	CTAG	2 cut(s)	594, 670
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	4 cut(s)	232, 389, 556, 657
MbiI	CCGCTC	1 cut(s)	266
MboI	GATC	4 cut(s)	230, 387, 554, 655
MhlI	GDGCHC	3 cut(s)	76, 454, 468
MluCI	AATT	1 cut(s)	597
MlyI	GAGTC	4 cut(s)	244, 283, 620, 649
MnlI	CCTC	8 cut(s)	25, 254, 338, 375, 436, 466, 488, 492
MroI	TCCGGA	1 cut(s)	253
MslI	CAYNNNNRTG	1 cut(s)	489
MspA1I	CMGCKG	1 cut(s)	648
MspI	CCGG	4 cut(s)	67, 254, 357, 612
MwoI	GCNNNNNNNGC	3 cut(s)	51, 332, 413
NdeII	GATC	4 cut(s)	230, 387, 554, 655
NlaIII	CATG	1 cut(s)	330
NlaIV	GGNNCC	3 cut(s)	355, 453, 467
NmuCI	GTSAC	1 cut(s)	271
PkrI	GCNGC	3 cut(s)	141, 334, 650
PleI	GAGTC	4 cut(s)	244, 283, 620, 648
PpsI	GAGTC	4 cut(s)	244, 283, 620, 648
PspFI	CCCAGC	3 cut(s)	321, 432, 644
PspN4I	GGNNCC	3 cut(s)	355, 453, 467
PspPI	GGNCC	3 cut(s)	107, 479, 650
RseI	CAYNNNNRTG	1 cut(s)	489
SalI	GTCGAC	1 cut(s)	548
SatI	GCNGC	3 cut(s)	140, 333, 649
Sau3AI	GATC	4 cut(s)	230, 387, 554, 655
Sau96I	GGNCC	3 cut(s)	107, 479, 650
SchI	GAGTC	4 cut(s)	244, 283, 620, 649
SduI	GDGCHC	3 cut(s)	76, 454, 468
SetI	ASST	7 cut(s)	202, 409, 422, 477, 499, 511, 546
SfaNI	GCATC	2 cut(s)	115, 408
SinI	GGWCC	1 cut(s)	107
SmiMI	CAYNNNNRTG	1 cut(s)	489
SmlI	CTYRAG	1 cut(s)	637
SmoI	CTYRAG	1 cut(s)	637
Sse9I	AATT	1 cut(s)	597
SsiI	CCGC	3 cut(s)	54, 266, 648
SspMI	CTAG	2 cut(s)	594, 670
TaaI	ACNGT	3 cut(s)	95, 353, 443
TaqI	TCGA	2 cut(s)	242, 549
TaqII	GACCGA	2 cut(s)	95, 567
TasI	AATT	1 cut(s)	597
TauI	GCSGC	1 cut(s)	651
TscAI	CASTG	2 cut(s)	52, 306
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	2 cut(s)	139, 332
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	1 cut(s)	11
TspGWI	ACGGA	1 cut(s)	290
TspRI	CASTG	2 cut(s)	52, 306
VpaK11BI	GGWCC	1 cut(s)	107
XapI	RAATTY	1 cut(s)	597
XmiI	GTMKAC	1 cut(s)	549
XspI	CTAG	2 cut(s)	594, 670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.