Rh6CG263600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000783
Physical Location & Seq
Forward (+)
43671528 .. 43671713
186 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG263600.1

Sequence Viewer

Length: 186 bp
ATGGTGGCGGATCGTGCTGAGGTTCCCTTGACAGTGCTTGCAGAGTTTCGGCCCTTGGCATGGGTTGCACTTGATAGAGACACCCGCGGCAGTGTTGGCTTATGTGGCTGGAGATTGGCGGTGAAGGAGGTCAAAGATGGCGTGGAGATTGGCGGTGAAGGAGGTCAAAGATGGCGTCCGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

61

Amino Acids

6.7

Weight (kDa)

6.16

Isoelectric Point (pI)

25.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 87
AciI CCGC 5 cut(s) 8, 85, 87, 119, 153
AclWI GGATC 1 cut(s) 18
AcyI GRCGYC 1 cut(s) 175
AfiI CCNNNNNNNGG 1 cut(s) 60
Alw26I GTCTC 1 cut(s) 72
AlwI GGATC 1 cut(s) 18
AoxI GGCC 1 cut(s) 50
ArsI GACNNNNNNTTYG 1 cut(s) 160
AspS9I GGNCC 1 cut(s) 51
AsuHPI GGTGA 2 cut(s) 133, 167
BbvCI CCTCAGC 1 cut(s) 18
BccI CCATC 2 cut(s) 131, 165
BcoDI GTCTC 1 cut(s) 72
BisI GCNGC 1 cut(s) 88
BlsI GCNGC 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 51
BmiI GGNNCC 1 cut(s) 24
BpmI CTGGAG 1 cut(s) 130
Bpu10I CCTNAGC 1 cut(s) 18
BsaHI GRCGYC 1 cut(s) 175
BsaJI CCNNGG 2 cut(s) 54, 85
Bsc4I CCNNNNNNNGG 1 cut(s) 60
BseDI CCNNGG 2 cut(s) 54, 85
BseLI CCNNNNNNNGG 1 cut(s) 60
BseMII CTCAG 1 cut(s) 9
Bsh1236I CGCG 1 cut(s) 87
BshFI GGCC 1 cut(s) 52
BslI CCNNNNNNNGG 1 cut(s) 60
BsmAI GTCTC 1 cut(s) 72
BsnI GGCC 1 cut(s) 52
Bsp143I GATC 2 cut(s) 10, 180
BspACI CCGC 5 cut(s) 8, 85, 87, 119, 153
BspANI GGCC 1 cut(s) 52
BspCNI CTCAG 1 cut(s) 10
BspFNI CGCG 1 cut(s) 87
BspLI GGNNCC 1 cut(s) 24
BspPI GGATC 1 cut(s) 18
BssECI CCNNGG 2 cut(s) 54, 85
BssMI GATC 2 cut(s) 10, 180
BssNI GRCGYC 1 cut(s) 175
BssT1I CCWWGG 1 cut(s) 54
Bst4CI ACNGT 1 cut(s) 34
BstACI GRCGYC 1 cut(s) 175
BstAPI GCANNNNNTGC 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 1 cut(s) 18
BstDSI CCRYGG 1 cut(s) 85
BstFNI CGCG 1 cut(s) 87
BstKTI GATC 2 cut(s) 13, 183
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 2 cut(s) 10, 180
BstMWI GCNNNNNNNGC 4 cut(s) 14, 65, 96, 105
BstUI CGCG 1 cut(s) 87
BsuRI GGCC 1 cut(s) 52
BtgI CCRYGG 1 cut(s) 85
BtsI GCAGTG 1 cut(s) 97
BtsIMutI CAGTG 2 cut(s) 39, 97
Cac8I GCNNGC 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 51
Cfr42I CCGCGG 1 cut(s) 88
CseI GACGC 1 cut(s) 164
CviAII CATG 1 cut(s) 60
CviJI RGCY 3 cut(s) 52, 99, 108
CviKI_1 RGCY 3 cut(s) 52, 99, 108
DdeI CTNAG 1 cut(s) 18
DpnI GATC 2 cut(s) 12, 182
DpnII GATC 2 cut(s) 10, 180
EciI GGCGGA 1 cut(s) 23
Eco130I CCWWGG 1 cut(s) 54
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 1 cut(s) 63
FaiI YATR 2 cut(s) 61, 103
FatI CATG 1 cut(s) 59
FauI CCCGC 1 cut(s) 92
Fnu4HI GCNGC 1 cut(s) 88
Fsp4HI GCNGC 1 cut(s) 88
GluI GCNGC 1 cut(s) 88
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 1 cut(s) 52
HgaI GACGC 1 cut(s) 164
Hin1I GRCGYC 1 cut(s) 175
Hin1II CATG 1 cut(s) 63
HphI GGTGA 2 cut(s) 133, 167
Hpy188I TCNGA 1 cut(s) 180
HpyAV CCTTC 2 cut(s) 118, 152
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4V TGCA 2 cut(s) 41, 68
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 65, 96, 105
HpyF3I CTNAG 1 cut(s) 18
Hsp92I GRCGYC 1 cut(s) 175
Hsp92II CATG 1 cut(s) 63
KspI CCGCGG 1 cut(s) 88
Kzo9I GATC 2 cut(s) 10, 180
LpnPI CCDG 1 cut(s) 94
MalI GATC 2 cut(s) 12, 182
MboI GATC 2 cut(s) 10, 180
MnlI CCTC 3 cut(s) 13, 121, 155
MspA1I CMGCKG 1 cut(s) 87
MvnI CGCG 1 cut(s) 87
MwoI GCNNNNNNNGC 4 cut(s) 14, 65, 96, 105
NdeII GATC 2 cut(s) 10, 180
NlaIII CATG 1 cut(s) 63
NlaIV GGNNCC 1 cut(s) 24
PkrI GCNGC 1 cut(s) 89
PspN4I GGNNCC 1 cut(s) 24
PspPI GGNCC 1 cut(s) 51
SacII CCGCGG 1 cut(s) 88
SatI GCNGC 1 cut(s) 88
Sau3AI GATC 2 cut(s) 10, 180
Sau96I GGNCC 1 cut(s) 51
SetI ASST 3 cut(s) 24, 132, 166
Sfr303I CCGCGG 1 cut(s) 88
SgrBI CCGCGG 1 cut(s) 88
SsiI CCGC 5 cut(s) 8, 85, 87, 119, 153
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 1 cut(s) 34
TauI GCSGC 1 cut(s) 90
TscAI CASTG 2 cut(s) 39, 97
TspRI CASTG 2 cut(s) 39, 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.