Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000783

Physical Location & Seq

Genomic Coordinates Reverse (-)

2280480 .. 2281619

Gene Structure 1140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005840

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGTCCTATTGATAGTGATGATGGATTTGCTCTTGATCCGTCGAGCAATGGTGGTGATAGCTAAAGGCAATCCTAGCTCCGCCATTGGTGATAGCGATTGGCACGGTGGCCAGATTGTTGCTATTGGAGGTGGTGATGCCTGGAGGAGTTCCAACGATGGTAGTGTGGTCTTCAATGGTGGAGGCGGTATGTCTCGAGTTGACCTCTACCCTAGACGGTCTTTTGGTTCGATGGTGACTGCCGGTGGTTTTGAACGTAGTGCTGGCTTTCAGCCTTCGTCTGGAGGCGGTGACTGCATCTGGTTGGGATCTGTTCTCCTTGGAGAGGAAGGCAGCGATCTGTTGATGGTGAAGGATGGTGATTTGGCTCGATTTGTTTTCATTGACGATGTCGGCGGCTGGGGTGGGAATCGACTTGGTCGTGGTGGCCTAGCAGTGGCTCTGTGGCTGATTTTTATGGCGGCAAGGCTAGTTGGAGGTGGTGGTGAGGCGTCCTTAGCACTTCTCGGGGTGCCCTTCGCAATTGCCATGTGGACTAGGGATTTATGGGATGATGCTTACTGGTGGGTCTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

192

Amino Acids

20.1

Weight (kDa)

4.73

Isoelectric Point (pI)

43.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000783)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0474951 RchiOBHm_Chr4g0445321 RchiOBHm_Chr5g0016061 RchiOBHm_Chr5g0029401 RchiOBHm_Chr7g0233151
rosa_laevigata	RLG00000002375 RLG00000002823 RLG00000002896 RLG00000003592 RLG00000003843 RLG00000005840 RLG00000008293 RLG00000012102 RLG00000013197 RLG00000016959 RLG00000018233 RLG00000019847 RLG00000023131 RLG00000027840 RLG00000028025 RLG00000028621 RLG00000029122 RLG00000031472 RLG00000031740 RLG00000032291 RLG00000036121
rosa_multiflora	Rmu_sc0004277.1_g000092 Rmu_sc0007019.1_g000008 Rmu_sc0015060.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225560 Rroxscaffold_4G00282260
rosa_rugosa	Rorug03G0193700 Rorug03G0193800
rosa_samantha	Rh1AG034200 Rh1BG030300 Rh1CG033700 Rh2AG674000 Rh2BG312500 Rh2BG685200 Rh2CG648200 Rh2DG699100 Rh3BG279900 Rh4AG080800 Rh4BG423800 Rh4BG433700 Rh4CG088300 Rh4CG399600 Rh4CG438000 Rh4DG429600 Rh5AG205800 Rh5AG219700 Rh5BG204500 Rh5CG226300 Rh5CG242700 Rh5DG207900 Rh5DG208000 Rh6AG244300 Rh6AG386900 Rh6BG098000 Rh6CG263600 Rh6CG356900 Rh6DG255800 Rh6DG405600 Rh7AG318300 Rh7BG360200 Rh7CG189300 Rh7CG335100 Rh7DG370000
rosa_wichuraiana	Rw5G018750 Rw5G020040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	511
AciI	CCGC	5 cut(s)	81, 186, 288, 396, 461
AclWI	GGATC	2 cut(s)	31, 316
AcoI	YGGCCR	1 cut(s)	109
AcyI	GRCGYC	1 cut(s)	491
AfiI	CCNNNNNNNGG	3 cut(s)	281, 325, 436
AgsI	TTSAA	2 cut(s)	175, 254
AjnI	CCWGG	1 cut(s)	140
AluBI	AGCT	2 cut(s)	62, 78
AluI	AGCT	2 cut(s)	62, 78
Alw26I	GTCTC	1 cut(s)	198
AlwI	GGATC	2 cut(s)	31, 316
Ama87I	CYCGRG	2 cut(s)	195, 506
AoxI	GGCC	2 cut(s)	109, 427
ApeKI	GCWGC	1 cut(s)	333
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	8 cut(s)	67, 101, 146, 247, 302, 361, 371, 497
AvaI	CYCGRG	2 cut(s)	195, 506
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	516
BalI	TGGCCA	1 cut(s)	111
BanI	GGYRCC	1 cut(s)	511
BbsI	GAAGAC	1 cut(s)	163
BbvI	GCAGC	1 cut(s)	345
BccI	CCATC	5 cut(s)	16, 152, 226, 340, 350
BciT130I	CCWGG	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	198
BfaI	CTAG	6 cut(s)	75, 213, 431, 470, 537, 574
BisI	GCNGC	3 cut(s)	334, 397, 462
BlsI	GCNGC	3 cut(s)	335, 398, 463
Bme1390I	CCNGG	1 cut(s)	142
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	2 cut(s)	195, 506
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	513
BmrFI	CCNGG	1 cut(s)	142
BmsI	GCATC	3 cut(s)	127, 306, 544
BpiI	GAAGAC	1 cut(s)	163
BplI	GAGNNNNNCTC	2 cut(s)	189, 221
BpmI	CTGGAG	2 cut(s)	163, 303
Bpu10I	CCTNAGC	1 cut(s)	496
BsaHI	GRCGYC	1 cut(s)	491
BsaJI	CCNNGG	1 cut(s)	319
Bsc4I	CCNNNNNNNGG	3 cut(s)	281, 325, 436
Bse118I	RCCGGY	1 cut(s)	242
Bse1I	ACTGG	1 cut(s)	566
Bse3DI	GCAATG	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	142
BseDI	CCNNGG	1 cut(s)	319
BseGI	GGATG	2 cut(s)	361, 556
BseLI	CCNNNNNNNGG	3 cut(s)	281, 325, 436
BseMI	GCAATG	1 cut(s)	54
BseNI	ACTGG	1 cut(s)	566
BseRI	GAGGAG	1 cut(s)	160
BseSI	GKGCMC	1 cut(s)	516
BseXI	GCAGC	1 cut(s)	345
BseYI	CCCAGC	1 cut(s)	399
BshFI	GGCC	2 cut(s)	111, 429
BshNI	GGYRCC	1 cut(s)	511
BsiHKCI	CYCGRG	2 cut(s)	195, 506
BsiSI	CCGG	1 cut(s)	243
BslI	CCNNNNNNNGG	3 cut(s)	281, 325, 436
BsmAI	GTCTC	1 cut(s)	198
BsnI	GGCC	2 cut(s)	111, 429
BsoBI	CYCGRG	2 cut(s)	195, 506
Bsp1286I	GDGCHC	1 cut(s)	516
Bsp143I	GATC	3 cut(s)	36, 308, 337
BspACI	CCGC	5 cut(s)	81, 186, 288, 396, 461
BspANI	GGCC	2 cut(s)	111, 429
BspLI	GGNNCC	1 cut(s)	513
BspPI	GGATC	2 cut(s)	31, 316
BspT107I	GGYRCC	1 cut(s)	511
BsrDI	GCAATG	1 cut(s)	54
BsrFI	RCCGGY	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	566
BssAI	RCCGGY	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	3 cut(s)	36, 308, 337
BssNI	GRCGYC	1 cut(s)	491
BssT1I	CCWWGG	1 cut(s)	319
Bst2UI	CCWGG	1 cut(s)	142
Bst4CI	ACNGT	2 cut(s)	107, 219
BstACI	GRCGYC	1 cut(s)	491
BstC8I	GCNNGC	1 cut(s)	265
BstDEI	CTNAG	1 cut(s)	496
BstENI	CCTNNNNNAGG	1 cut(s)	323
BstF5I	GGATG	2 cut(s)	361, 556
BstKTI	GATC	3 cut(s)	39, 311, 340
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	3 cut(s)	36, 308, 337
BstMWI	GCNNNNNNNGC	3 cut(s)	75, 294, 497
BstNI	CCWGG	1 cut(s)	142
BstSCI	CCNGG	1 cut(s)	140
BstSLI	GKGCMC	1 cut(s)	516
BstV1I	GCAGC	1 cut(s)	345
BstV2I	GAAGAC	1 cut(s)	163
BstX2I	RGATCY	1 cut(s)	308
BstYI	RGATCY	1 cut(s)	308
BsuRI	GGCC	2 cut(s)	111, 429
BtsCI	GGATG	2 cut(s)	361, 556
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	1 cut(s)	441
Cac8I	GCNNGC	1 cut(s)	265
Cfr10I	RCCGGY	1 cut(s)	242
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	480
CviAII	CATG	1 cut(s)	529
DdeI	CTNAG	1 cut(s)	496
DpnI	GATC	3 cut(s)	38, 310, 339
DpnII	GATC	3 cut(s)	36, 308, 337
EaeI	YGGCCR	1 cut(s)	109
EciI	GGCGGA	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	319
Eco47I	GGWCC	1 cut(s)	4
Eco88I	CYCGRG	2 cut(s)	195, 506
EcoNI	CCTNNNNNAGG	1 cut(s)	323
EcoRII	CCWGG	1 cut(s)	140
EcoT14I	CCWWGG	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	319
FaeI	CATG	1 cut(s)	532
FaiI	YATR	4 cut(s)	191, 458, 530, 547
FatI	CATG	1 cut(s)	528
Fnu4HI	GCNGC	3 cut(s)	334, 397, 462
FokI	GGATG	2 cut(s)	368, 563
Fsp4HI	GCNGC	3 cut(s)	334, 397, 462
FspBI	CTAG	6 cut(s)	75, 213, 431, 470, 537, 574
GluI	GCNGC	3 cut(s)	334, 397, 462
GsaI	CCCAGC	1 cut(s)	403
GsuI	CTGGAG	2 cut(s)	163, 303
HaeIII	GGCC	2 cut(s)	111, 429
HapII	CCGG	1 cut(s)	243
HgaI	GACGC	1 cut(s)	480
Hin1I	GRCGYC	1 cut(s)	491
Hin1II	CATG	1 cut(s)	532
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	1 cut(s)	409
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	8 cut(s)	67, 101, 146, 247, 302, 361, 371, 497
Hpy166II	GTNNAC	2 cut(s)	202, 534
Hpy188III	TCNNGA	3 cut(s)	34, 195, 282
Hpy8I	GTNNAC	2 cut(s)	202, 534
Hpy99I	CGWCG	1 cut(s)	45
HpyAV	CCTTC	4 cut(s)	285, 323, 346, 526
HpyCH4III	ACNGT	2 cut(s)	107, 219
HpyCH4IV	ACGT	1 cut(s)	256
HpyCH4V	TGCA	1 cut(s)	297
HpyF10VI	GCNNNNNNNGC	3 cut(s)	75, 294, 497
HpyF3I	CTNAG	1 cut(s)	496
HpySE526I	ACGT	1 cut(s)	256
Hsp92I	GRCGYC	1 cut(s)	491
Hsp92II	CATG	1 cut(s)	532
Kzo9I	GATC	3 cut(s)	36, 308, 337
LmnI	GCTCC	1 cut(s)	83
LpnPI	CCDG	9 cut(s)	125, 127, 154, 249, 256, 267, 286, 385, 547
Lsp1109I	GCAGC	1 cut(s)	345
LweI	GCATC	3 cut(s)	127, 306, 544
MaeI	CTAG	6 cut(s)	75, 213, 431, 470, 537, 574
MaeII	ACGT	1 cut(s)	256
MaeIII	GTNAC	2 cut(s)	235, 290
MalI	GATC	3 cut(s)	38, 310, 339
MboI	GATC	3 cut(s)	36, 308, 337
MboII	GAAGA	1 cut(s)	163
MfeI	CAATTG	1 cut(s)	522
MflI	RGATCY	1 cut(s)	308
MhlI	GDGCHC	1 cut(s)	516
MlsI	TGGCCA	1 cut(s)	111
MluCI	AATT	1 cut(s)	522
MluNI	TGGCCA	1 cut(s)	111
MmeI	TCCRAC	2 cut(s)	177, 454
MnlI	CCTC	8 cut(s)	122, 138, 176, 215, 278, 319, 470, 481
Mox20I	TGGCCA	1 cut(s)	111
MscI	TGGCCA	1 cut(s)	111
Msp20I	TGGCCA	1 cut(s)	111
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	1 cut(s)	142
MunI	CAATTG	1 cut(s)	522
MvaI	CCWGG	1 cut(s)	142
MwoI	GCNNNNNNNGC	3 cut(s)	75, 294, 497
NdeII	GATC	3 cut(s)	36, 308, 337
NlaIII	CATG	1 cut(s)	532
NlaIV	GGNNCC	1 cut(s)	513
NmuCI	GTSAC	2 cut(s)	235, 290
PaeR7I	CTCGAG	1 cut(s)	195
PcsI	WCGNNNNNNNCGW	1 cut(s)	418
PfeI	GAWTC	1 cut(s)	409
PflFI	GACNNNGTC	2 cut(s)	389, 417
PkrI	GCNGC	3 cut(s)	335, 398, 463
Psp6I	CCWGG	1 cut(s)	140
PspFI	CCCAGC	1 cut(s)	399
PspGI	CCWGG	1 cut(s)	140
PspN4I	GGNNCC	1 cut(s)	513
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	308
PsyI	GACNNNGTC	2 cut(s)	389, 417
SatI	GCNGC	3 cut(s)	334, 397, 462
Sau3AI	GATC	3 cut(s)	36, 308, 337
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	142
SduI	GDGCHC	1 cut(s)	516
SetI	ASST	6 cut(s)	64, 80, 133, 207, 259, 481
SfaNI	GCATC	3 cut(s)	127, 306, 544
Sfr274I	CTCGAG	1 cut(s)	195
SinI	GGWCC	1 cut(s)	4
SlaI	CTCGAG	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	195
SmoI	CTYRAG	1 cut(s)	195
Sse9I	AATT	1 cut(s)	522
SsiI	CCGC	5 cut(s)	81, 186, 288, 396, 461
SspMI	CTAG	6 cut(s)	75, 213, 431, 470, 537, 574
StyD4I	CCNGG	1 cut(s)	140
StyI	CCWWGG	1 cut(s)	319
TaaI	ACNGT	2 cut(s)	107, 219
TaiI	ACGT	1 cut(s)	259
TaqI	TCGA	5 cut(s)	43, 196, 230, 370, 412
TasI	AATT	1 cut(s)	522
TauI	GCSGC	2 cut(s)	399, 464
TfiI	GAWTC	1 cut(s)	409
TscAI	CASTG	1 cut(s)	441
TseFI	GTSAC	2 cut(s)	235, 290
TseI	GCWGC	1 cut(s)	333
Tsp45I	GTSAC	2 cut(s)	235, 290
TspDTI	ATGAA	1 cut(s)	370
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	1 cut(s)	441
Tth111I	GACNNNGTC	2 cut(s)	389, 417
VpaK11BI	GGWCC	1 cut(s)	4
XagI	CCTNNNNNAGG	1 cut(s)	323
XhoI	CTCGAG	1 cut(s)	195
XspI	CTAG	6 cut(s)	75, 213, 431, 470, 537, 574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.