Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000783

Physical Location & Seq

Genomic Coordinates Reverse (-)

23184699 .. 23197338

Gene Structure 12640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG204500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGTGGATTTTAGACAAGAAGCTCTGAAGTTATGGGGCGATCGAGTCTACGGAATTAAATTTCCATTGAGCAACTACGTAAATGACATGGAGGAGCTGACGTTGTTTACCAAGAAAGACTACCTGCTCCATATCCGAAGAAACATGACAAGCTTTGCCAGGGCAATGTCCCAATATAGTGGAGTTTCAAGGGGTCTTCGGGGCTGGAATGTTGGTAAGACCCGATCTCGAGTGTCGGAGGTGGCTCCGGAGCTAGGAACGGTGGTAACGGATTGTGCTGAGCCTCTGTCGTTGGTGCTTGTAGAGTTCAGGCGTTGGGCATGGGCTTCACTTGATAGAGGCACCGGTGCCGGTGCTGACTTTGGTGGCTGGAGATCTGAGATGAGGGAGATCAGCGATGGTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010074 GO:0010468 GO:0010492 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0019827 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042127 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0048507 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0098727 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

135

Amino Acids

15.34

Weight (kDa)

8.85

Isoelectric Point (pI)

43.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000783)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0474951 RchiOBHm_Chr4g0445321 RchiOBHm_Chr5g0016061 RchiOBHm_Chr5g0029401 RchiOBHm_Chr7g0233151
rosa_laevigata	RLG00000002375 RLG00000002823 RLG00000002896 RLG00000003592 RLG00000003843 RLG00000005840 RLG00000008293 RLG00000012102 RLG00000013197 RLG00000016959 RLG00000018233 RLG00000019847 RLG00000023131 RLG00000027840 RLG00000028025 RLG00000028621 RLG00000029122 RLG00000031472 RLG00000031740 RLG00000032291 RLG00000036121
rosa_multiflora	Rmu_sc0004277.1_g000092 Rmu_sc0007019.1_g000008 Rmu_sc0015060.1_g000001
rosa_roxburghii	Rroxscaffold_3G00225560 Rroxscaffold_4G00282260
rosa_rugosa	Rorug03G0193700 Rorug03G0193800
rosa_samantha	Rh1AG034200 Rh1BG030300 Rh1CG033700 Rh2AG674000 Rh2BG312500 Rh2BG685200 Rh2CG648200 Rh2DG699100 Rh3BG279900 Rh4AG080800 Rh4BG423800 Rh4BG433700 Rh4CG088300 Rh4CG399600 Rh4CG438000 Rh4DG429600 Rh5AG205800 Rh5AG219700 Rh5BG204500 Rh5CG226300 Rh5CG242700 Rh5DG207900 Rh5DG208000 Rh6AG244300 Rh6AG386900 Rh6BG098000 Rh6CG263600 Rh6CG356900 Rh6DG255800 Rh6DG405600 Rh7AG318300 Rh7BG360200 Rh7CG189300 Rh7CG335100 Rh7DG370000
rosa_wichuraiana	Rw5G018750 Rw5G020040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	132
AccB1I	GGYRCC	2 cut(s)	341, 347
AccI	GTMKAC	1 cut(s)	48
AccIII	TCCGGA	1 cut(s)	247
AcsI	RAATTY	1 cut(s)	59
AcuI	CTGAAG	1 cut(s)	47
AfiI	CCNNNNNNNGG	1 cut(s)	254
AgeI	ACCGGT	1 cut(s)	344
AgsI	TTSAA	1 cut(s)	189
AjnI	CCWGG	1 cut(s)	158
AluBI	AGCT	4 cut(s)	23, 97, 153, 253
AluI	AGCT	4 cut(s)	23, 97, 153, 253
Ama87I	CYCGRG	1 cut(s)	228
Aor13HI	TCCGGA	1 cut(s)	247
ApoI	RAATTY	1 cut(s)	59
AsiGI	ACCGGT	1 cut(s)	344
AvaI	CYCGRG	1 cut(s)	228
BanI	GGYRCC	2 cut(s)	341, 347
BbsI	GAAGAC	1 cut(s)	188
BccI	CCATC	1 cut(s)	392
BciT130I	CCWGG	1 cut(s)	160
BfaI	CTAG	1 cut(s)	254
BfuAI	ACCTGC	1 cut(s)	132
BglII	AGATCT	1 cut(s)	374
BlpI	GCTNAGC	1 cut(s)	279
Bme1390I	CCNGG	1 cut(s)	160
BmeT110I	CYCGRG	1 cut(s)	228
BmiI	GGNNCC	3 cut(s)	246, 343, 349
BmrFI	CCNGG	1 cut(s)	160
BpiI	GAAGAC	1 cut(s)	188
BpmI	CTGGAG	1 cut(s)	391
Bpu1102I	GCTNAGC	1 cut(s)	279
BsaAI	YACGTR	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	159
BsaWI	WCCGGW	2 cut(s)	247, 344
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
Bse118I	RCCGGY	2 cut(s)	344, 350
Bse3DI	GCAATG	1 cut(s)	171
BseAI	TCCGGA	1 cut(s)	247
BseBI	CCWGG	1 cut(s)	160
BseDI	CCNNGG	1 cut(s)	159
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMI	GCAATG	1 cut(s)	171
BseMII	CTCAG	2 cut(s)	270, 369
BseRI	GAGGAG	1 cut(s)	107
Bsh1285I	CGRYCG	1 cut(s)	43
BshNI	GGYRCC	2 cut(s)	341, 347
BshTI	ACCGGT	1 cut(s)	344
BsiEI	CGRYCG	1 cut(s)	43
BsiHKCI	CYCGRG	1 cut(s)	228
BsiSI	CCGG	3 cut(s)	248, 345, 351
BslFI	GGGAC	1 cut(s)	154
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	154
BsoBI	CYCGRG	1 cut(s)	228
Bsp13I	TCCGGA	1 cut(s)	247
Bsp143I	GATC	4 cut(s)	40, 224, 374, 390
Bsp1720I	GCTNAGC	1 cut(s)	279
BspCNI	CTCAG	2 cut(s)	271, 370
BspEI	TCCGGA	1 cut(s)	247
BspLI	GGNNCC	3 cut(s)	246, 343, 349
BspMI	ACCTGC	1 cut(s)	132
BspT107I	GGYRCC	2 cut(s)	341, 347
BsrDI	GCAATG	1 cut(s)	171
BsrFI	RCCGGY	2 cut(s)	344, 350
BssAI	RCCGGY	2 cut(s)	344, 350
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	4 cut(s)	40, 224, 374, 390
Bst2UI	CCWGG	1 cut(s)	160
Bst4CI	ACNGT	1 cut(s)	262
BstBAI	YACGTR	1 cut(s)	79
BstDEI	CTNAG	2 cut(s)	279, 378
BstKTI	GATC	4 cut(s)	43, 227, 377, 393
BstMBI	GATC	4 cut(s)	40, 224, 374, 390
BstMCI	CGRYCG	1 cut(s)	43
BstNI	CCWGG	1 cut(s)	160
BstSCI	CCNGG	1 cut(s)	158
BstSNI	TACGTA	1 cut(s)	79
BstV2I	GAAGAC	1 cut(s)	188
BstX2I	RGATCY	1 cut(s)	374
BstXI	CCANNNNNNTGG	1 cut(s)	179
BstYI	RGATCY	1 cut(s)	374
BveI	ACCTGC	1 cut(s)	132
Cfr10I	RCCGGY	2 cut(s)	344, 350
CspAI	ACCGGT	1 cut(s)	344
CviAII	CATG	3 cut(s)	88, 145, 321
CviJI	RGCY	9 cut(s)	23, 97, 153, 204, 245, 253, 283, 326, 369
CviKI_1	RGCY	9 cut(s)	23, 97, 153, 204, 245, 253, 283, 326, 369
DdeI	CTNAG	2 cut(s)	279, 378
DpnI	GATC	4 cut(s)	42, 226, 376, 392
DpnII	GATC	4 cut(s)	40, 224, 374, 390
Eco105I	TACGTA	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	228
EcoRII	CCWGG	1 cut(s)	158
FaeI	CATG	3 cut(s)	91, 148, 324
FaiI	YATR	6 cut(s)	34, 89, 132, 146, 177, 322
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	3 cut(s)	87, 144, 320
FblI	GTMKAC	1 cut(s)	48
FspBI	CTAG	1 cut(s)	254
GsuI	CTGGAG	1 cut(s)	391
HapII	CCGG	3 cut(s)	248, 345, 351
Hin1II	CATG	3 cut(s)	91, 148, 324
HindIII	AAGCTT	1 cut(s)	151
HinfI	GANTC	1 cut(s)	45
HpaII	CCGG	3 cut(s)	248, 345, 351
Hpy166II	GTNNAC	2 cut(s)	49, 108
Hpy188I	TCNGA	5 cut(s)	27, 137, 238, 379, 407
Hpy188III	TCNNGA	2 cut(s)	228, 248
Hpy8I	GTNNAC	2 cut(s)	49, 108
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4IV	ACGT	2 cut(s)	78, 101
HpyF3I	CTNAG	2 cut(s)	279, 378
HpySE526I	ACGT	2 cut(s)	78, 101
Hsp92II	CATG	3 cut(s)	91, 148, 324
Kpn2I	TCCGGA	1 cut(s)	247
Kzo9I	GATC	4 cut(s)	40, 224, 374, 390
LmnI	GCTCC	4 cut(s)	94, 132, 250, 250
LpnPI	CCDG	9 cut(s)	137, 145, 172, 190, 261, 295, 355, 358, 364
MaeI	CTAG	1 cut(s)	254
MaeII	ACGT	2 cut(s)	78, 101
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	4 cut(s)	42, 226, 376, 392
MboI	GATC	4 cut(s)	40, 224, 374, 390
MboII	GAAGA	2 cut(s)	150, 188
MflI	RGATCY	1 cut(s)	374
MluCI	AATT	2 cut(s)	54, 59
MlyI	GAGTC	1 cut(s)	54
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	5 cut(s)	85, 232, 294, 332, 378
MroI	TCCGGA	1 cut(s)	247
MseI	TTAA	1 cut(s)	57
MspI	CCGG	3 cut(s)	248, 345, 351
MspR9I	CCNGG	1 cut(s)	160
MvaI	CCWGG	1 cut(s)	160
NdeII	GATC	4 cut(s)	40, 224, 374, 390
NlaIII	CATG	3 cut(s)	91, 148, 324
NlaIV	GGNNCC	3 cut(s)	246, 343, 349
PaeR7I	CTCGAG	1 cut(s)	228
PinAI	ACCGGT	1 cut(s)	344
Ple19I	CGATCG	1 cut(s)	43
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
Ppu21I	YACGTR	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	158
PspGI	CCWGG	1 cut(s)	158
PspN4I	GGNNCC	3 cut(s)	246, 343, 349
PsuI	RGATCY	1 cut(s)	374
PvuI	CGATCG	1 cut(s)	43
SaqAI	TTAA	1 cut(s)	57
Sau3AI	GATC	4 cut(s)	40, 224, 374, 390
SchI	GAGTC	1 cut(s)	54
ScrFI	CCNGG	1 cut(s)	160
SetI	ASST	8 cut(s)	25, 81, 99, 104, 126, 155, 243, 255
Sfr274I	CTCGAG	1 cut(s)	228
SgrAI	CRCCGGYG	1 cut(s)	344
SlaI	CTCGAG	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	228
SmoI	CTYRAG	1 cut(s)	228
SnaBI	TACGTA	1 cut(s)	79
Sse9I	AATT	2 cut(s)	54, 59
SspMI	CTAG	1 cut(s)	254
StyD4I	CCNGG	1 cut(s)	158
TaaI	ACNGT	1 cut(s)	262
TaiI	ACGT	2 cut(s)	81, 104
TaqI	TCGA	2 cut(s)	43, 229
TasI	AATT	2 cut(s)	54, 59
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TspGWI	ACGGA	2 cut(s)	66, 284
XapI	RAATTY	1 cut(s)	59
XhoI	CTCGAG	1 cut(s)	228
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.