Rh6CG356900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000783
Physical Location & Seq
Reverse (-)
54514343 .. 54515465
1123 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG356900.1

Sequence Viewer

Length: 246 bp
ATGGCTGAGAACCTCAGGCAGGCGGATCTGGAGCGAGGAGTGGTGGTGACGACTTGTGCTGAGCCTTCGTCGTTGGTGCTTACAGAGTTCCGGCGCTTGGCATGGGCTGCACTTGGTAGAGGCATCGGCGCCGGTGCTGGCGTTGGTGGTTGGAACTCTGAGATGAAGGAGATCGGCGATAACGTCCAAGCTGATTGGGCTGCACTTGGTAGAGGCACCGGCACCTACTGGGTTGACTGTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

8.59

Weight (kDa)

4.69

Isoelectric Point (pI)

20.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 128, 215, 221
AciI CCGC 1 cut(s) 23
AclWI GGATC 1 cut(s) 33
AcyI GRCGYC 1 cut(s) 129
AfiI CCNNNNNNNGG 2 cut(s) 19, 97
AluBI AGCT 1 cut(s) 191
AluI AGCT 1 cut(s) 191
AlwI GGATC 1 cut(s) 33
ApeKI GCWGC 2 cut(s) 107, 200
AspLEI GCGC 2 cut(s) 96, 131
AsuHPI GGTGA 1 cut(s) 58
AxyI CCTNAGG 1 cut(s) 14
BanI GGYRCC 3 cut(s) 128, 215, 221
BbvI GCAGC 2 cut(s) 94, 187
BfoI RGCGCY 2 cut(s) 97, 132
BisI GCNGC 2 cut(s) 108, 201
BlpI GCTNAGC 1 cut(s) 60
BlsI GCNGC 2 cut(s) 109, 202
BmiI GGNNCC 3 cut(s) 130, 217, 223
BmrI ACTGGG 1 cut(s) 238
BmsI GCATC 1 cut(s) 132
BmuI ACTGGG 1 cut(s) 238
BpmI CTGGAG 1 cut(s) 50
Bpu1102I GCTNAGC 1 cut(s) 60
BsaHI GRCGYC 1 cut(s) 129
BsaXI ACNNNNNCTCC 2 cut(s) 30, 60
Bsc4I CCNNNNNNNGG 2 cut(s) 19, 97
Bse118I RCCGGY 2 cut(s) 131, 218
Bse1I ACTGG 1 cut(s) 233
Bse21I CCTNAGG 1 cut(s) 14
BseLI CCNNNNNNNGG 2 cut(s) 19, 97
BseMII CTCAG 3 cut(s) 28, 51, 150
BseNI ACTGG 1 cut(s) 233
BseRI GAGGAG 1 cut(s) 51
BseXI GCAGC 2 cut(s) 94, 187
BsgI GTGCAG 2 cut(s) 93, 186
BshNI GGYRCC 3 cut(s) 128, 215, 221
BsiSI CCGG 3 cut(s) 91, 132, 219
BslI CCNNNNNNNGG 2 cut(s) 19, 97
Bsp143I GATC 2 cut(s) 25, 171
Bsp1720I GCTNAGC 1 cut(s) 60
BspACI CCGC 1 cut(s) 23
BspCNI CTCAG 3 cut(s) 27, 52, 151
BspLI GGNNCC 3 cut(s) 130, 217, 223
BspPI GGATC 1 cut(s) 33
BspT107I GGYRCC 3 cut(s) 128, 215, 221
BsrFI RCCGGY 2 cut(s) 131, 218
BsrI ACTGG 1 cut(s) 233
BssAI RCCGGY 2 cut(s) 131, 218
BssMI GATC 2 cut(s) 25, 171
BssNI GRCGYC 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 239
BstACI GRCGYC 1 cut(s) 129
BstAPI GCANNNNNTGC 1 cut(s) 107
BstC8I GCNNGC 2 cut(s) 21, 139
BstDEI CTNAG 4 cut(s) 6, 14, 60, 159
BstENI CCTNNNNNAGG 1 cut(s) 17
BstH2I RGCGCY 2 cut(s) 97, 132
BstHHI GCGC 2 cut(s) 96, 131
BstKTI GATC 2 cut(s) 28, 174
BstMBI GATC 2 cut(s) 25, 171
BstMWI GCNNNNNNNGC 2 cut(s) 107, 197
BstV1I GCAGC 2 cut(s) 94, 187
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
Bsu36I CCTNAGG 1 cut(s) 14
Cac8I GCNNGC 2 cut(s) 21, 139
CfoI GCGC 2 cut(s) 96, 131
Cfr10I RCCGGY 2 cut(s) 131, 218
CviAII CATG 1 cut(s) 102
CviJI RGCY 5 cut(s) 5, 64, 107, 191, 200
CviKI_1 RGCY 5 cut(s) 5, 64, 107, 191, 200
DdeI CTNAG 4 cut(s) 6, 14, 60, 159
DinI GGCGCC 1 cut(s) 130
DpnI GATC 2 cut(s) 27, 173
DpnII GATC 2 cut(s) 25, 171
EciI GGCGGA 1 cut(s) 38
Eco81I CCTNAGG 1 cut(s) 14
EcoNI CCTNNNNNAGG 1 cut(s) 17
EgeI GGCGCC 1 cut(s) 130
EheI GGCGCC 1 cut(s) 130
FaeI CATG 1 cut(s) 105
FaiI YATR 1 cut(s) 103
FatI CATG 1 cut(s) 101
Fnu4HI GCNGC 2 cut(s) 108, 201
Fsp4HI GCNGC 2 cut(s) 108, 201
GlaI GCGC 2 cut(s) 95, 130
GluI GCNGC 2 cut(s) 108, 201
GsuI CTGGAG 1 cut(s) 50
HaeII RGCGCY 2 cut(s) 97, 132
HapII CCGG 3 cut(s) 91, 132, 219
HhaI GCGC 2 cut(s) 96, 131
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 1 cut(s) 105
Hin6I GCGC 2 cut(s) 94, 129
HinP1I GCGC 2 cut(s) 94, 129
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HpaII CCGG 3 cut(s) 91, 132, 219
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 1 cut(s) 160
Hpy188III TCNNGA 1 cut(s) 29
Hpy8I GTNNAC 1 cut(s) 235
Hpy99I CGWCG 1 cut(s) 73
HpyAV CCTTC 2 cut(s) 75, 160
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 2 cut(s) 110, 203
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 197
HpyF3I CTNAG 4 cut(s) 6, 14, 60, 159
HpySE526I ACGT 1 cut(s) 183
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 1 cut(s) 105
HspAI GCGC 2 cut(s) 94, 129
KasI GGCGCC 1 cut(s) 128
Kzo9I GATC 2 cut(s) 25, 171
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 7 cut(s) 5, 14, 104, 123, 145, 214, 232
Lsp1109I GCAGC 2 cut(s) 94, 187
LweI GCATC 1 cut(s) 132
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 1 cut(s) 46
MalI GATC 2 cut(s) 27, 173
MboI GATC 2 cut(s) 25, 171
MflI RGATCY 1 cut(s) 25
Mly113I GGCGCC 1 cut(s) 129
MmeI TCCRAC 1 cut(s) 131
MnlI CCTC 4 cut(s) 23, 29, 113, 206
MspI CCGG 3 cut(s) 91, 132, 219
MwoI GCNNNNNNNGC 2 cut(s) 107, 197
NarI GGCGCC 1 cut(s) 129
NdeII GATC 2 cut(s) 25, 171
NlaIII CATG 1 cut(s) 105
NlaIV GGNNCC 3 cut(s) 130, 217, 223
NmuCI GTSAC 1 cut(s) 46
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PkrI GCNGC 2 cut(s) 109, 202
PluTI GGCGCC 1 cut(s) 132
PspN4I GGNNCC 3 cut(s) 130, 217, 223
PsuI RGATCY 1 cut(s) 25
SatI GCNGC 2 cut(s) 108, 201
Sau3AI GATC 2 cut(s) 25, 171
SetI ASST 4 cut(s) 15, 186, 193, 227
SfaNI GCATC 1 cut(s) 132
SfoI GGCGCC 1 cut(s) 130
SgrAI CRCCGGYG 1 cut(s) 131
SsiI CCGC 1 cut(s) 23
SspDI GGCGCC 1 cut(s) 128
TaaI ACNGT 1 cut(s) 239
TaiI ACGT 1 cut(s) 186
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 2 cut(s) 107, 200
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 1 cut(s) 179
XagI CCTNNNNNAGG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.