Rh7CG189300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000783
Physical Location & Seq
Forward (+)
16709911 .. 16710769
859 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG189300.1

Sequence Viewer

Length: 360 bp
ATGCAGAGTTTCAAGCCAAAGCTGAGTTCTTCTGGAGCTGGGAGAGAGGCAGGGGCAATCGTCGAGAACGACGACGACGATGCCGCTGACATCGAAGTCGACGATGGCGACAAAACTTATCGCTTGCTTCTCTATTCTTATGGCGGTGGCGACAAATCTCTTCGTCCACCTCTATCTTTGGTTAGAGGAGGAGATGTTGCTGATGTTGGTGGGATTGGGATTAGAACACTGATTGTTCAAATCTGGTTTGGTGGACCTCTTGATAGTGAGGAAGGATCTACTCTTGATCCGTCGATCGATGGTGATGGTAGCGAGTGGCGCGGTGGCCAGATTGCTTCTATTGGAGGTGGTGGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

12.21

Weight (kDa)

4.14

Isoelectric Point (pI)

26.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 95
AccI GTMKAC 1 cut(s) 99
AccII CGCG 1 cut(s) 321
AciI CCGC 3 cut(s) 84, 144, 321
AclWI GGATC 2 cut(s) 281, 283
AcoI YGGCCR 1 cut(s) 325
AgsI TTSAA 2 cut(s) 13, 239
AjuI GAANNNNNNNTTGG 2 cut(s) 10, 42
AluBI AGCT 2 cut(s) 22, 38
AluI AGCT 2 cut(s) 22, 38
AlwI GGATC 2 cut(s) 281, 283
AoxI GGCC 1 cut(s) 325
AspLEI GCGC 1 cut(s) 321
AspS9I GGNCC 1 cut(s) 254
AsuHPI GGTGA 1 cut(s) 314
AvaII GGWCC 1 cut(s) 254
BalI TGGCCA 1 cut(s) 327
BccI CCATC 3 cut(s) 98, 293, 299
BcgI CGANNNNNNTGC 2 cut(s) 62, 96
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
Bme18I GGWCC 1 cut(s) 254
BmgT120I GGNCC 1 cut(s) 254
BmsI GCATC 1 cut(s) 70
BpmI CTGGAG 1 cut(s) 54
Bsa29I ATCGAT 1 cut(s) 297
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
BseCI ATCGAT 1 cut(s) 297
BseMII CTCAG 1 cut(s) 14
BseRI GAGGAG 2 cut(s) 201, 204
BseYI CCCAGC 1 cut(s) 38
Bsh1236I CGCG 1 cut(s) 321
Bsh1285I CGRYCG 1 cut(s) 297
BshFI GGCC 1 cut(s) 327
BshVI ATCGAT 1 cut(s) 297
BsiEI CGRYCG 1 cut(s) 297
BsnI GGCC 1 cut(s) 327
Bsp143I GATC 3 cut(s) 275, 286, 294
BspACI CCGC 3 cut(s) 84, 144, 321
BspANI GGCC 1 cut(s) 327
BspCNI CTCAG 1 cut(s) 15
BspDI ATCGAT 1 cut(s) 297
BspFNI CGCG 1 cut(s) 321
BspPI GGATC 2 cut(s) 281, 283
BssMI GATC 3 cut(s) 275, 286, 294
Bst6I CTCTTC 1 cut(s) 165
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 23
BstFNI CGCG 1 cut(s) 321
BstHHI GCGC 1 cut(s) 321
BstKTI GATC 3 cut(s) 278, 289, 297
BstMBI GATC 3 cut(s) 275, 286, 294
BstMCI CGRYCG 1 cut(s) 297
BstMWI GCNNNNNNNGC 1 cut(s) 318
BstUI CGCG 1 cut(s) 321
BstX2I RGATCY 1 cut(s) 275
BstYI RGATCY 1 cut(s) 275
Bsu15I ATCGAT 1 cut(s) 297
BsuRI GGCC 1 cut(s) 327
BsuTUI ATCGAT 1 cut(s) 297
BtsIMutI CAGTG 1 cut(s) 227
Cac8I GCNNGC 1 cut(s) 125
CfoI GCGC 1 cut(s) 321
Cfr13I GGNCC 1 cut(s) 254
ClaI ATCGAT 1 cut(s) 297
CviJI RGCY 4 cut(s) 16, 22, 38, 327
CviKI_1 RGCY 4 cut(s) 16, 22, 38, 327
DdeI CTNAG 1 cut(s) 23
DpnI GATC 3 cut(s) 277, 288, 296
DpnII GATC 3 cut(s) 275, 286, 294
DrdI GACNNNNNNGTC 1 cut(s) 95
DseDI GACNNNNNNGTC 1 cut(s) 95
EaeI YGGCCR 1 cut(s) 325
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
Eco47I GGWCC 1 cut(s) 254
FaiI YATR 1 cut(s) 141
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 1 cut(s) 84
Fsp4HI GCNGC 1 cut(s) 84
GlaI GCGC 1 cut(s) 320
GluI GCNGC 1 cut(s) 84
GsaI CCCAGC 1 cut(s) 42
GsuI CTGGAG 1 cut(s) 54
HaeIII GGCC 1 cut(s) 327
HhaI GCGC 1 cut(s) 321
Hin6I GCGC 1 cut(s) 319
HinP1I GCGC 1 cut(s) 319
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HphI GGTGA 1 cut(s) 314
Hpy166II GTNNAC 3 cut(s) 100, 167, 254
Hpy188III TCNNGA 4 cut(s) 33, 64, 260, 284
Hpy8I GTNNAC 3 cut(s) 100, 167, 254
Hpy99I CGWCG 6 cut(s) 65, 74, 77, 80, 104, 295
HpyAV CCTTC 1 cut(s) 266
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 318
HpyF3I CTNAG 1 cut(s) 23
HspAI GCGC 1 cut(s) 319
Kzo9I GATC 3 cut(s) 275, 286, 294
LmnI GCTCC 1 cut(s) 35
LpnPI CCDG 5 cut(s) 18, 24, 36, 229, 341
LweI GCATC 1 cut(s) 70
MalI GATC 3 cut(s) 277, 288, 296
MboI GATC 3 cut(s) 275, 286, 294
MboII GAAGA 2 cut(s) 21, 152
MflI RGATCY 1 cut(s) 275
MlsI TGGCCA 1 cut(s) 327
MluNI TGGCCA 1 cut(s) 327
MnlI CCTC 7 cut(s) 40, 179, 180, 182, 262, 267, 338
Mox20I TGGCCA 1 cut(s) 327
MscI TGGCCA 1 cut(s) 327
Msp20I TGGCCA 1 cut(s) 327
MspA1I CMGCKG 1 cut(s) 86
MvnI CGCG 1 cut(s) 321
MwoI GCNNNNNNNGC 1 cut(s) 318
NdeII GATC 3 cut(s) 275, 286, 294
PcsI WCGNNNNNNNCGW 5 cut(s) 66, 69, 75, 99, 105
PkrI GCNGC 1 cut(s) 85
Ple19I CGATCG 1 cut(s) 297
PspFI CCCAGC 1 cut(s) 38
PspPI GGNCC 1 cut(s) 254
PsuI RGATCY 1 cut(s) 275
PvuI CGATCG 1 cut(s) 297
SalI GTCGAC 1 cut(s) 98
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 3 cut(s) 275, 286, 294
Sau96I GGNCC 1 cut(s) 254
SetI ASST 5 cut(s) 24, 40, 172, 259, 349
SfaNI GCATC 1 cut(s) 70
SinI GGWCC 1 cut(s) 254
SsiI CCGC 3 cut(s) 84, 144, 321
TaqI TCGA 5 cut(s) 63, 93, 99, 293, 297
TauI GCSGC 1 cut(s) 86
TscAI CASTG 1 cut(s) 234
TspGWI ACGGA 1 cut(s) 279
TspRI CASTG 1 cut(s) 234
VpaK11BI GGWCC 1 cut(s) 254
XmiI GTMKAC 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.